Wall clock time and date at job start Tue Mar 31 2020 18:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 120.00100 * 2 1 4 4 H 1.07993 * 120.00087 * 198.30261 * 3 2 1 5 5 C 1.38814 * 119.99727 * 18.30322 * 3 2 1 6 6 N 1.31616 * 120.00404 * 14.30245 * 5 3 2 7 7 Si 1.86801 * 120.00086 * 194.30349 * 5 3 2 8 8 H 1.48503 * 109.47051 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47184 * 119.99395 * 7 5 3 10 10 H 1.48499 * 109.47439 * 240.00240 * 7 5 3 11 11 C 1.46492 * 120.00246 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47552 * 270.00209 * 11 2 1 13 13 N 1.46499 * 109.47568 * 179.97438 * 12 11 2 14 14 C 1.46492 * 120.00347 * 270.00033 * 13 12 11 15 15 C 1.34786 * 119.99435 * 90.00119 * 13 12 11 16 16 O 1.21273 * 120.00223 * 353.99274 * 15 13 12 17 17 C 1.50701 * 119.99510 * 173.99598 * 15 13 12 18 18 C 1.52998 * 115.54955 * 75.58371 * 17 15 13 19 19 C 1.50692 * 109.47092 * 39.84382 * 18 17 15 20 20 C 1.38248 * 119.97504 * 82.88054 * 19 18 17 21 21 C 1.38200 * 120.02681 * 180.02562 * 20 19 18 22 22 C 1.38462 * 119.97434 * 0.23432 * 21 20 19 23 23 F 1.35099 * 120.02924 * 179.72273 * 22 21 20 24 24 C 1.38463 * 119.94767 * 359.49530 * 22 21 20 25 25 C 1.38208 * 119.97058 * 0.52113 * 24 22 21 26 26 C 1.53002 * 117.51372 * 221.28509 * 17 15 13 27 27 C 1.53000 * 60.00076 * 107.48135 * 26 17 15 28 28 H 1.08997 * 109.47155 * 275.09108 * 1 2 3 29 29 H 1.09001 * 109.46487 * 35.09100 * 1 2 3 30 30 H 1.08995 * 109.46755 * 155.09103 * 1 2 3 31 31 H 0.97001 * 120.00584 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47548 * 150.00263 * 11 2 1 33 33 H 1.09005 * 109.47240 * 30.00255 * 11 2 1 34 34 H 1.09004 * 109.46994 * 59.99738 * 12 11 2 35 35 H 1.09005 * 109.46885 * 300.00263 * 12 11 2 36 36 H 1.08992 * 109.47458 * 264.82326 * 14 13 12 37 37 H 1.09000 * 109.47037 * 24.82645 * 14 13 12 38 38 H 1.09000 * 109.47088 * 144.82085 * 14 13 12 39 39 H 1.08996 * 109.47159 * 279.83977 * 18 17 15 40 40 H 1.09008 * 109.46582 * 159.84337 * 18 17 15 41 41 H 1.07996 * 119.98968 * 0.02562 * 20 19 18 42 42 H 1.07997 * 120.01515 * 179.97438 * 21 20 19 43 43 H 1.07994 * 120.01346 * 180.25826 * 24 22 21 44 44 H 1.07995 * 119.98091 * 179.75169 * 25 24 22 45 45 H 1.08998 * 117.49464 * 214.97373 * 26 17 15 46 46 H 1.09000 * 117.49803 * 359.97438 * 26 17 15 47 47 H 1.09000 * 117.49668 * 252.50897 * 27 26 17 48 48 H 1.08997 * 117.52145 * 107.47833 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1887 1.2096 -0.2937 5 6 1.5083 2.3577 0.3775 6 7 0.3485 2.3028 0.9973 7 14 2.2912 4.0125 0.0060 8 1 3.5843 3.8025 -0.6935 9 1 1.3834 4.8062 -0.8608 10 1 2.5283 4.7444 1.2762 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7098 1.4432 13 7 3.1846 -2.9788 1.4438 14 6 2.4517 -4.2472 1.4445 15 6 4.5324 -2.9791 1.4437 16 8 5.1391 -1.9349 1.3332 17 6 5.2855 -4.2773 1.5808 18 6 5.3174 -5.1570 0.3294 19 6 5.4982 -4.2898 -0.8897 20 6 6.7636 -3.8741 -1.2601 21 6 6.9306 -3.0784 -2.3776 22 6 5.8295 -2.6935 -3.1236 23 9 5.9909 -1.9111 -4.2130 24 6 4.5632 -3.1151 -2.7549 25 6 4.3986 -3.9106 -1.6367 26 6 6.5220 -4.2854 2.4819 27 6 5.2383 -4.9814 2.9384 28 1 -0.3633 0.0912 1.0236 29 1 -0.3632 0.8409 -0.5908 30 1 -0.3633 -0.9320 -0.4328 31 1 -0.0999 3.1216 1.2608 32 1 3.1500 -1.1385 -0.5133 33 1 1.6085 -2.0286 -0.5130 34 1 1.5001 -1.8399 1.9571 35 1 3.0416 -0.9498 1.9568 36 1 2.3503 -4.6077 2.4681 37 1 1.4623 -4.0954 1.0130 38 1 2.9972 -4.9823 0.8528 39 1 4.3801 -5.7073 0.2482 40 1 6.1468 -5.8607 0.4011 41 1 7.6220 -4.1712 -0.6759 42 1 7.9191 -2.7534 -2.6665 43 1 3.7040 -2.8191 -3.3384 44 1 3.4106 -4.2362 -1.3467 45 1 7.3583 -4.9174 2.1831 46 1 6.7913 -3.3515 2.9753 47 1 4.6628 -4.5055 3.7324 48 1 5.2295 -6.0713 2.9400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268253157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:18 Heat of formation + Delta-G solvation = -16.478294 kcal Electronic energy + Delta-G solvation = -30132.347483 eV Core-core repulsion = 26102.977897 eV Total energy + Delta-G solvation = -4029.369586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.92314 -41.51947 -39.80801 -38.15460 -37.41662 -36.33097 -33.45995 -33.02164 -32.06702 -30.36753 -27.99856 -27.85843 -27.52163 -25.81418 -24.04956 -23.48287 -23.25078 -22.51901 -21.99257 -19.55947 -18.84006 -18.66698 -17.74040 -17.42088 -17.24910 -16.86289 -16.64287 -16.43817 -16.22033 -15.76525 -15.41930 -15.15643 -15.02146 -14.89303 -14.58156 -14.39731 -14.23592 -13.98046 -13.87777 -13.60186 -13.41647 -13.13440 -12.94615 -12.89974 -12.82979 -12.70423 -12.61407 -12.42839 -12.33856 -12.07897 -12.04532 -11.91221 -11.63074 -11.45860 -10.88804 -10.71254 -10.57709 -10.02815 -9.68421 -9.48993 -8.81862 -7.89457 -5.32288 0.16162 0.31324 1.38228 1.39547 1.50800 1.73433 2.06599 2.47187 2.58643 2.81332 3.24189 3.32732 3.52365 3.70454 3.76622 3.78896 3.89728 3.96705 4.00573 4.12460 4.29127 4.32769 4.36377 4.42152 4.46927 4.59624 4.71621 4.79422 4.81522 4.81622 4.87873 4.90719 4.99595 5.01634 5.02823 5.07744 5.16821 5.18763 5.22224 5.28974 5.30076 5.34062 5.54451 5.56832 5.67017 5.71927 5.96940 6.27084 6.58226 7.11328 7.34807 7.83254 8.21510 9.14033 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.004361 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.827965 B = 6419.344567 C = 7827.292407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.617 5.617 3 C -0.258 4.258 4 H 0.051 0.949 5 C -0.047 4.047 6 N -0.933 5.933 7 Si 0.960 3.040 8 H -0.279 1.279 9 H -0.282 1.282 10 H -0.288 1.288 11 C 0.157 3.843 12 C 0.114 3.886 13 N -0.605 5.605 14 C 0.067 3.933 15 C 0.540 3.460 16 O -0.589 6.589 17 C -0.158 4.158 18 C -0.029 4.029 19 C -0.097 4.097 20 C -0.081 4.081 21 C -0.163 4.163 22 C 0.064 3.936 23 F -0.157 7.157 24 C -0.165 4.165 25 C -0.086 4.086 26 C -0.154 4.154 27 C -0.132 4.132 28 H 0.007 0.993 29 H 0.019 0.981 30 H 0.036 0.964 31 H 0.250 0.750 32 H 0.019 0.981 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.156 0.844 42 H 0.144 0.856 43 H 0.131 0.869 44 H 0.145 0.855 45 H 0.134 0.866 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.247 -25.646 0.226 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.340 5.340 3 C -0.388 4.388 4 H 0.069 0.931 5 C -0.242 4.242 6 N -0.581 5.581 7 Si 0.788 3.212 8 H -0.204 1.204 9 H -0.208 1.208 10 H -0.215 1.215 11 C 0.029 3.971 12 C -0.012 4.012 13 N -0.338 5.338 14 C -0.074 4.074 15 C 0.329 3.671 16 O -0.469 6.469 17 C -0.161 4.161 18 C -0.066 4.066 19 C -0.097 4.097 20 C -0.098 4.098 21 C -0.181 4.181 22 C 0.045 3.955 23 F -0.135 7.135 24 C -0.184 4.184 25 C -0.104 4.104 26 C -0.191 4.191 27 C -0.169 4.169 28 H 0.025 0.975 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.174 0.826 42 H 0.162 0.838 43 H 0.149 0.851 44 H 0.163 0.837 45 H 0.152 0.848 46 H 0.087 0.913 47 H 0.105 0.895 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.423 -24.947 0.158 26.668 hybrid contribution 0.144 2.349 -0.432 2.393 sum 9.567 -22.598 -0.274 24.541 Atomic orbital electron populations 1.20599 0.81709 0.96340 0.97903 1.44186 1.02577 1.01315 1.85954 1.19375 0.95336 0.86351 1.37754 0.93072 1.25552 0.98331 1.01001 0.99354 1.70221 1.17940 1.26782 1.43107 0.85317 0.77839 0.80639 0.77389 1.20434 1.20785 1.21504 1.21045 0.94656 0.86953 0.94401 1.21935 0.95106 0.84594 0.99541 1.47954 1.05568 1.07651 1.72606 1.22232 0.97658 0.83931 1.03575 1.20307 0.82005 0.90098 0.74723 1.90717 1.69021 1.36080 1.51056 1.21332 1.04140 0.95167 0.95451 1.20293 1.06234 0.94388 0.85679 1.20160 0.92857 0.99474 0.97234 1.21178 0.98358 0.95634 0.94670 1.21362 0.98362 1.01191 0.97217 1.18109 0.95787 0.95133 0.86482 1.91443 1.96552 1.72877 1.52672 1.21308 0.95811 1.01010 1.00239 1.21129 0.99849 0.96257 0.93153 1.23155 0.92530 1.02456 1.00960 1.23227 0.99152 1.01750 0.92786 0.97506 0.96220 0.94541 0.94084 0.96215 0.91667 0.90732 0.95161 0.90880 0.90212 0.88498 0.87239 0.86207 0.82648 0.83777 0.85066 0.83701 0.84839 0.91262 0.89545 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 9.01 127.77 1.15 10.10 16 2 N -0.62 -32.70 2.93 -726.95 -2.13 -34.84 16 3 C -0.26 -15.50 9.70 84.03 0.82 -14.69 16 4 H 0.05 3.21 7.85 -2.91 -0.02 3.19 16 5 C -0.05 -2.82 5.09 84.86 0.43 -2.39 16 6 N -0.93 -56.83 10.51 21.65 0.23 -56.60 16 7 Si 0.96 48.64 29.58 68.60 2.03 50.67 16 8 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 9 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 10 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 11 C 0.16 6.79 6.03 86.38 0.52 7.31 16 12 C 0.11 4.50 5.66 86.38 0.49 4.99 16 13 N -0.61 -17.38 2.87 -846.77 -2.43 -19.81 16 14 C 0.07 1.11 9.80 127.77 1.25 2.36 16 15 C 0.54 16.71 5.48 87.66 0.48 17.19 16 16 O -0.59 -25.91 16.59 -3.01 -0.05 -25.96 16 17 C -0.16 -2.89 1.20 -52.93 -0.06 -2.95 16 18 C -0.03 -0.36 5.03 29.84 0.15 -0.21 16 19 C -0.10 -1.98 4.25 -19.86 -0.08 -2.06 16 20 C -0.08 -1.73 9.73 22.26 0.22 -1.52 16 21 C -0.16 -4.18 10.03 22.31 0.22 -3.95 16 22 C 0.06 1.94 7.30 22.38 0.16 2.10 16 23 F -0.16 -5.18 17.27 44.97 0.78 -4.40 16 24 C -0.16 -4.69 10.03 22.32 0.22 -4.47 16 25 C -0.09 -2.02 9.31 22.26 0.21 -1.81 16 26 C -0.15 -2.52 9.76 30.59 0.30 -2.22 16 27 C -0.13 -1.60 9.60 30.60 0.29 -1.31 16 28 H 0.01 0.36 7.46 -2.39 -0.02 0.34 16 29 H 0.02 1.06 7.05 -2.39 -0.02 1.04 16 30 H 0.04 1.49 7.83 -2.39 -0.02 1.47 16 31 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.02 0.95 8.03 -2.39 -0.02 0.94 16 33 H 0.07 2.38 7.86 -2.38 -0.02 2.36 16 34 H 0.07 2.79 8.07 -2.38 -0.02 2.77 16 35 H 0.03 1.49 7.51 -2.38 -0.02 1.47 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.24 8.03 -2.39 -0.02 1.22 16 38 H 0.10 1.04 4.63 -2.39 -0.01 1.03 16 39 H 0.11 0.81 5.91 -2.39 -0.01 0.80 16 40 H 0.12 0.75 7.93 -2.38 -0.02 0.73 16 41 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 43 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 44 H 0.15 2.76 7.90 -2.91 -0.02 2.74 16 45 H 0.13 1.31 8.08 -2.39 -0.02 1.29 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -82.04 397.27 6.14 -75.90 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.95 Total: 8.58 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 6.77 Total: 6.46 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -4.34 Total: -111.25 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.78 Total: -4.40 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -82.04 6.14 -75.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268253157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.427 kcal (2) G-P(sol) polarization free energy of solvation -82.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds