Wall clock time and date at job start Tue Mar 31 2020 18:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47070 * 2 1 4 4 C 1.46504 * 120.00059 * 269.99589 * 3 2 1 5 5 C 1.52996 * 109.47265 * 270.00391 * 4 3 2 6 6 N 1.46500 * 109.47110 * 179.97438 * 5 4 3 7 7 C 1.36941 * 120.00011 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99939 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99782 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00070 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99650 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47371 * 90.00230 * 11 9 7 13 13 H 1.48497 * 109.47176 * 209.99981 * 11 9 7 14 14 H 1.48504 * 109.47389 * 329.99994 * 11 9 7 15 15 C 1.34778 * 120.00215 * 89.99778 * 3 2 1 16 16 O 1.21279 * 119.99686 * 179.97438 * 15 3 2 17 17 C 1.50692 * 119.99862 * 0.02562 * 15 3 2 18 18 H 1.09004 * 112.90785 * 311.24673 * 17 15 3 19 19 C 1.53784 * 113.61665 * 82.50065 * 17 15 3 20 20 C 1.53778 * 87.08081 * 139.98095 * 19 17 15 21 21 C 1.53778 * 87.08449 * 334.56700 * 20 19 17 22 22 H 1.08998 * 113.61879 * 270.88747 * 21 20 19 23 23 C 1.50698 * 113.69240 * 139.98944 * 21 20 19 24 24 C 1.38243 * 119.97456 * 322.19279 * 23 21 20 25 25 C 1.38207 * 120.02359 * 179.76207 * 24 23 21 26 26 C 1.38460 * 119.97377 * 0.51581 * 25 24 23 27 27 F 1.35092 * 120.02589 * 179.76754 * 26 25 24 28 28 C 1.38461 * 119.94709 * 359.73936 * 26 25 24 29 29 C 1.38199 * 119.97756 * 0.02562 * 28 26 25 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46938 * 300.00223 * 1 2 3 32 32 H 1.08996 * 109.46824 * 60.00198 * 1 2 3 33 33 H 1.09004 * 109.47032 * 239.99362 * 2 1 3 34 34 H 1.08996 * 109.46824 * 119.99802 * 2 1 3 35 35 H 1.09006 * 109.46948 * 30.00091 * 4 3 2 36 36 H 1.08998 * 109.47126 * 149.99842 * 4 3 2 37 37 H 1.08997 * 109.47134 * 299.99815 * 5 4 3 38 38 H 1.09004 * 109.47458 * 60.00111 * 5 4 3 39 39 H 0.96998 * 120.00115 * 0.02562 * 6 5 4 40 40 H 0.97002 * 119.99371 * 179.97438 * 10 9 7 41 41 H 1.08993 * 113.61313 * 254.52692 * 19 17 15 42 42 H 1.09000 * 113.61578 * 25.43424 * 19 17 15 43 43 H 1.08999 * 113.61526 * 220.02035 * 20 19 17 44 44 H 1.08999 * 113.69218 * 89.12660 * 20 19 17 45 45 H 1.07994 * 119.98652 * 0.02562 * 24 23 21 46 46 H 1.07995 * 120.01282 * 180.25470 * 25 24 23 47 47 H 1.08002 * 120.00917 * 179.97438 * 28 26 25 48 48 H 1.07997 * 119.98751 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7104 6 7 3.9516 2.5214 -2.9794 7 6 5.1840 2.4492 -3.5722 8 1 5.9758 1.8831 -3.1043 9 6 5.4153 3.1035 -4.7743 10 7 4.4504 3.7938 -5.3442 11 14 7.0962 3.0044 -5.5832 12 1 7.1373 1.8350 -6.4976 13 1 7.3472 4.2467 -6.3569 14 1 8.1403 2.8525 -4.5382 15 6 2.2430 2.0166 1.1672 16 8 2.6477 3.1599 1.1671 17 6 1.9923 1.3060 2.4722 18 1 1.0190 0.8168 2.5088 19 6 3.1541 0.4002 2.9136 20 6 2.8969 0.9006 4.3447 21 6 2.2964 2.1662 3.7103 22 1 3.0287 2.9523 3.5266 23 6 1.0622 2.6690 4.4138 24 6 0.1416 1.7707 4.9205 25 6 -0.9881 2.2307 5.5702 26 6 -1.2031 3.5919 5.7041 27 9 -2.3095 4.0427 6.3348 28 6 -0.2831 4.4907 5.1915 29 6 0.8484 4.0284 4.5465 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5140 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0285 36 1 2.0956 3.1410 -1.1385 37 1 4.3884 2.2154 -0.9508 38 1 3.8746 0.7621 -1.8408 39 1 3.2405 3.0301 -3.3994 40 1 4.6123 4.2513 -6.1841 41 1 2.9539 -0.6628 2.7802 42 1 4.1211 0.7035 2.5122 43 1 3.8084 1.0873 4.9125 44 1 2.1712 0.3013 4.8945 45 1 0.3076 0.7091 4.8123 46 1 -1.7051 1.5287 5.9696 47 1 -0.4500 5.5527 5.2951 48 1 1.5663 4.7293 4.1470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268470243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:24 Heat of formation + Delta-G solvation = -27.255015 kcal Electronic energy + Delta-G solvation = -28562.812073 eV Core-core repulsion = 24532.975174 eV Total energy + Delta-G solvation = -4029.836900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.13656 -40.99641 -39.28183 -37.54417 -36.07793 -34.55705 -31.79522 -31.44416 -31.04971 -30.28535 -28.31334 -26.32467 -25.62422 -23.69549 -23.51989 -23.26089 -22.03485 -21.54989 -19.86816 -18.85753 -18.05770 -17.41961 -17.10949 -16.51580 -16.28161 -15.88305 -15.82403 -15.22624 -14.85041 -14.51398 -14.32679 -13.96507 -13.82319 -13.66972 -13.55743 -13.40161 -13.31601 -13.14764 -12.97768 -12.89972 -12.61401 -12.28274 -11.94617 -11.92313 -11.54218 -11.28746 -11.24454 -11.16954 -10.96426 -10.87263 -10.83469 -10.64917 -10.56045 -10.10064 -9.75745 -9.51011 -9.38907 -8.85850 -8.76782 -8.48839 -6.91597 -5.74768 -3.03866 0.83640 0.95120 2.73304 3.07105 3.27199 3.44942 3.49977 3.52166 3.98703 4.22526 4.26013 4.37025 4.47716 4.57085 4.60429 4.62403 4.70090 4.81943 4.92147 4.97296 5.08795 5.10313 5.24534 5.32370 5.41404 5.52195 5.53577 5.62323 5.62790 5.65638 5.66418 5.68291 5.75081 5.76518 5.84123 5.85134 5.95668 6.04978 6.07494 6.11386 6.17627 6.36276 6.60059 6.61445 6.76894 6.94174 7.56366 7.71394 8.34169 8.44009 9.54630 10.11261 10.46211 11.48214 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.002296 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.544054 B =12194.427438 C =12434.643519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.605 5.605 4 C 0.107 3.893 5 C 0.145 3.855 6 N -0.731 5.731 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.521 3.479 16 O -0.532 6.532 17 C -0.126 4.126 18 H 0.112 0.888 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.052 4.052 22 H 0.115 0.885 23 C -0.076 4.076 24 C -0.090 4.090 25 C -0.154 4.154 26 C 0.090 3.910 27 F -0.143 7.143 28 C -0.152 4.152 29 C -0.078 4.078 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.022 0.978 38 H 0.017 0.983 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.135 0.865 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.826 -9.206 24.322 28.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.338 5.338 4 C -0.015 4.015 5 C 0.016 3.984 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.308 3.692 16 O -0.408 6.408 17 C -0.147 4.147 18 H 0.130 0.870 19 C -0.162 4.162 20 C -0.170 4.170 21 C -0.071 4.071 22 H 0.133 0.867 23 C -0.077 4.077 24 C -0.108 4.108 25 C -0.172 4.172 26 C 0.071 3.929 27 F -0.122 7.122 28 C -0.170 4.170 29 C -0.096 4.096 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.152 0.848 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.478 -8.606 24.299 28.218 hybrid contribution 0.297 0.200 -0.699 0.785 sum -11.180 -8.407 23.600 27.435 Atomic orbital electron populations 1.22230 0.96061 1.02122 1.02611 1.21593 0.94211 0.82777 1.03490 1.47927 1.65484 1.14178 1.06229 1.21685 0.98044 0.98369 0.83414 1.20890 0.92794 0.95402 0.89321 1.42219 1.12881 1.60806 1.21617 1.19201 0.89290 1.26029 1.02316 0.91231 1.24752 0.97858 1.00359 0.98084 1.69663 1.31607 1.37391 1.19567 0.86163 0.83667 0.76969 0.79240 1.21715 1.21719 1.20760 1.20383 0.77309 0.86537 0.84963 1.90712 1.45159 1.17802 1.87122 1.22938 1.01237 0.98424 0.92136 0.86969 1.22846 0.98082 0.99129 0.96136 1.23017 1.01469 0.96182 0.96327 1.21499 0.95043 0.97334 0.93175 0.86718 1.19814 0.96279 0.93277 0.98293 1.20872 0.92923 1.00016 0.97002 1.21098 0.99702 0.93738 1.02701 1.17745 0.84805 0.92807 0.97579 1.91490 1.50841 1.89876 1.79969 1.21189 0.94914 1.00094 1.00845 1.21056 0.96568 0.95481 0.96474 0.91542 0.92668 0.91989 0.89853 0.90415 0.90664 0.89843 0.96035 0.96539 0.78288 0.93492 0.90314 0.89131 0.90476 0.89498 0.84980 0.84868 0.84755 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.17 37.16 0.38 -1.07 16 2 C 0.10 1.01 5.82 -4.04 -0.02 0.99 16 3 N -0.61 -8.36 2.47 -173.69 -0.43 -8.79 16 4 C 0.11 1.86 5.52 -4.04 -0.02 1.84 16 5 C 0.14 3.07 6.58 -4.04 -0.03 3.04 16 6 N -0.73 -19.24 5.60 -59.91 -0.34 -19.57 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 11 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.52 7.48 7.20 -10.99 -0.08 7.40 16 16 O -0.53 -9.93 15.48 5.56 0.09 -9.85 16 17 C -0.13 -1.22 2.25 -90.96 -0.20 -1.43 16 18 H 0.11 0.90 6.46 -51.93 -0.34 0.56 16 19 C -0.12 -0.98 6.92 -25.92 -0.18 -1.16 16 20 C -0.13 -0.91 7.46 -25.92 -0.19 -1.11 16 21 C -0.05 -0.49 3.30 -90.96 -0.30 -0.79 16 22 H 0.11 1.31 7.38 -51.93 -0.38 0.92 16 23 C -0.08 -0.71 5.29 -104.62 -0.55 -1.26 16 24 C -0.09 -0.70 8.59 -39.59 -0.34 -1.04 16 25 C -0.15 -1.27 10.03 -39.51 -0.40 -1.67 16 26 C 0.09 0.88 7.30 -39.42 -0.29 0.59 16 27 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 28 C -0.15 -1.45 10.03 -39.51 -0.40 -1.84 16 29 C -0.08 -0.77 9.71 -39.59 -0.38 -1.15 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.46 7.24 -51.93 -0.38 0.08 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.08 0.60 5.79 -51.93 -0.30 0.30 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.08 1.63 7.42 -51.93 -0.39 1.24 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.08 0.47 7.68 -51.93 -0.40 0.07 16 42 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.46 6.33 -51.93 -0.33 0.13 16 45 H 0.13 0.72 6.68 -52.49 -0.35 0.37 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.14 1.30 8.05 -52.49 -0.42 0.87 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -34.26 394.31 -9.61 -43.87 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.36 Total: 6.32 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -3.26 Total: -6.19 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.04 Total: -56.42 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.26 -9.61 -43.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268470243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.614 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds