Wall clock time and date at job start Tue Mar 31 2020 18:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47070 * 2 1 4 4 C 1.46504 * 120.00059 * 269.99589 * 3 2 1 5 5 C 1.52996 * 109.47265 * 270.00391 * 4 3 2 6 6 N 1.46500 * 109.47110 * 179.97438 * 5 4 3 7 7 C 1.36941 * 120.00011 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99939 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99782 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00070 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99650 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47371 * 90.00230 * 11 9 7 13 13 H 1.48497 * 109.47176 * 209.99981 * 11 9 7 14 14 H 1.48504 * 109.47389 * 329.99994 * 11 9 7 15 15 C 1.34778 * 120.00215 * 89.99778 * 3 2 1 16 16 O 1.21279 * 119.99686 * 179.97438 * 15 3 2 17 17 C 1.50692 * 119.99862 * 0.02562 * 15 3 2 18 18 H 1.09004 * 112.90785 * 311.24673 * 17 15 3 19 19 C 1.53784 * 113.61665 * 82.50065 * 17 15 3 20 20 C 1.53778 * 87.08081 * 139.98095 * 19 17 15 21 21 C 1.53778 * 87.08449 * 334.56700 * 20 19 17 22 22 H 1.08998 * 113.61879 * 270.88747 * 21 20 19 23 23 C 1.50698 * 113.69240 * 139.98944 * 21 20 19 24 24 C 1.38243 * 119.97456 * 322.19279 * 23 21 20 25 25 C 1.38207 * 120.02359 * 179.76207 * 24 23 21 26 26 C 1.38460 * 119.97377 * 0.51581 * 25 24 23 27 27 F 1.35092 * 120.02589 * 179.76754 * 26 25 24 28 28 C 1.38461 * 119.94709 * 359.73936 * 26 25 24 29 29 C 1.38199 * 119.97756 * 0.02562 * 28 26 25 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46938 * 300.00223 * 1 2 3 32 32 H 1.08996 * 109.46824 * 60.00198 * 1 2 3 33 33 H 1.09004 * 109.47032 * 239.99362 * 2 1 3 34 34 H 1.08996 * 109.46824 * 119.99802 * 2 1 3 35 35 H 1.09006 * 109.46948 * 30.00091 * 4 3 2 36 36 H 1.08998 * 109.47126 * 149.99842 * 4 3 2 37 37 H 1.08997 * 109.47134 * 299.99815 * 5 4 3 38 38 H 1.09004 * 109.47458 * 60.00111 * 5 4 3 39 39 H 0.96998 * 120.00115 * 0.02562 * 6 5 4 40 40 H 0.97002 * 119.99371 * 179.97438 * 10 9 7 41 41 H 1.08993 * 113.61313 * 254.52692 * 19 17 15 42 42 H 1.09000 * 113.61578 * 25.43424 * 19 17 15 43 43 H 1.08999 * 113.61526 * 220.02035 * 20 19 17 44 44 H 1.08999 * 113.69218 * 89.12660 * 20 19 17 45 45 H 1.07994 * 119.98652 * 0.02562 * 24 23 21 46 46 H 1.07995 * 120.01282 * 180.25470 * 25 24 23 47 47 H 1.08002 * 120.00917 * 179.97438 * 28 26 25 48 48 H 1.07997 * 119.98751 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7104 6 7 3.9516 2.5214 -2.9794 7 6 5.1840 2.4492 -3.5722 8 1 5.9758 1.8831 -3.1043 9 6 5.4153 3.1035 -4.7743 10 7 4.4504 3.7938 -5.3442 11 14 7.0962 3.0044 -5.5832 12 1 7.1373 1.8350 -6.4976 13 1 7.3472 4.2467 -6.3569 14 1 8.1403 2.8525 -4.5382 15 6 2.2430 2.0166 1.1672 16 8 2.6477 3.1599 1.1671 17 6 1.9923 1.3060 2.4722 18 1 1.0190 0.8168 2.5088 19 6 3.1541 0.4002 2.9136 20 6 2.8969 0.9006 4.3447 21 6 2.2964 2.1662 3.7103 22 1 3.0287 2.9523 3.5266 23 6 1.0622 2.6690 4.4138 24 6 0.1416 1.7707 4.9205 25 6 -0.9881 2.2307 5.5702 26 6 -1.2031 3.5919 5.7041 27 9 -2.3095 4.0427 6.3348 28 6 -0.2831 4.4907 5.1915 29 6 0.8484 4.0284 4.5465 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5140 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0285 36 1 2.0956 3.1410 -1.1385 37 1 4.3884 2.2154 -0.9508 38 1 3.8746 0.7621 -1.8408 39 1 3.2405 3.0301 -3.3994 40 1 4.6123 4.2513 -6.1841 41 1 2.9539 -0.6628 2.7802 42 1 4.1211 0.7035 2.5122 43 1 3.8084 1.0873 4.9125 44 1 2.1712 0.3013 4.8945 45 1 0.3076 0.7091 4.8123 46 1 -1.7051 1.5287 5.9696 47 1 -0.4500 5.5527 5.2951 48 1 1.5663 4.7293 4.1470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268470243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:23 Heat of formation + Delta-G solvation = -46.791507 kcal Electronic energy + Delta-G solvation = -28563.659239 eV Core-core repulsion = 24532.975174 eV Total energy + Delta-G solvation = -4030.684066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.89404 -41.86795 -40.17926 -38.37014 -37.37398 -36.35590 -33.62756 -32.10346 -31.76231 -31.55081 -29.68895 -27.50822 -26.32906 -25.45485 -24.30496 -24.05896 -23.26939 -22.69124 -20.76456 -19.83461 -19.20593 -18.75552 -18.29065 -17.49702 -17.08473 -16.88473 -16.72383 -16.58622 -16.10119 -15.58896 -15.48669 -15.24383 -15.12004 -14.86953 -14.62221 -14.47250 -14.28351 -14.03272 -13.95150 -13.83324 -13.56080 -13.09648 -12.97280 -12.93101 -12.80462 -12.67328 -12.59911 -12.32507 -12.25554 -12.14975 -11.94492 -11.89058 -11.85935 -11.50847 -11.19847 -10.99971 -10.65097 -10.05427 -9.70100 -9.48048 -9.09066 -7.99778 -5.30858 0.13428 0.28508 1.44642 1.47705 1.56147 1.63698 1.98167 2.54130 2.57798 3.29684 3.33374 3.46077 3.52580 3.70090 3.80760 3.83539 3.95951 3.98026 4.02858 4.11610 4.18001 4.20850 4.26266 4.34618 4.41505 4.45941 4.53909 4.59998 4.69546 4.80883 4.89400 4.90739 4.97210 4.99602 5.05928 5.08147 5.08877 5.10586 5.13545 5.18515 5.28578 5.39997 5.41601 5.47153 5.59749 5.68399 5.94167 6.21601 6.47964 7.22541 7.27520 7.99244 8.24483 9.23725 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.002296 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.544054 B =12194.427438 C =12434.643519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 N -0.604 5.604 4 C 0.122 3.878 5 C 0.152 3.848 6 N -0.744 5.744 7 C -0.250 4.250 8 H 0.074 0.926 9 C -0.075 4.075 10 N -0.969 5.969 11 Si 0.979 3.021 12 H -0.280 1.280 13 H -0.293 1.293 14 H -0.271 1.271 15 C 0.511 3.489 16 O -0.588 6.588 17 C -0.119 4.119 18 H 0.142 0.858 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.060 4.060 22 H 0.082 0.918 23 C -0.082 4.082 24 C -0.081 4.081 25 C -0.148 4.148 26 C 0.071 3.929 27 F -0.151 7.151 28 C -0.161 4.161 29 C -0.099 4.099 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.053 0.947 37 H -0.002 1.002 38 H 0.031 0.969 39 H 0.374 0.626 40 H 0.253 0.747 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.118 0.882 45 H 0.168 0.832 46 H 0.159 0.841 47 H 0.138 0.862 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 -12.859 25.812 31.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.026 4.026 3 N -0.336 5.336 4 C -0.002 4.002 5 C 0.025 3.975 6 N -0.387 5.387 7 C -0.382 4.382 8 H 0.092 0.908 9 C -0.267 4.267 10 N -0.619 5.619 11 Si 0.807 3.193 12 H -0.207 1.207 13 H -0.220 1.220 14 H -0.196 1.196 15 C 0.301 3.699 16 O -0.468 6.468 17 C -0.140 4.140 18 H 0.160 0.840 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.079 4.079 22 H 0.100 0.900 23 C -0.082 4.082 24 C -0.099 4.099 25 C -0.167 4.167 26 C 0.051 3.949 27 F -0.130 7.130 28 C -0.180 4.180 29 C -0.117 4.117 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.016 0.984 38 H 0.049 0.951 39 H 0.206 0.794 40 H 0.062 0.938 41 H 0.130 0.870 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.136 0.864 45 H 0.186 0.814 46 H 0.176 0.824 47 H 0.156 0.844 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.967 -12.319 25.827 31.016 hybrid contribution 0.437 1.355 -1.128 1.817 sum -11.529 -10.963 24.698 29.379 Atomic orbital electron populations 1.22194 0.94597 1.03737 1.01956 1.21942 0.95377 0.80256 1.05011 1.48062 1.65130 1.15713 1.04675 1.21263 0.95789 0.97373 0.85753 1.20922 0.94794 0.95149 0.86667 1.42420 1.12070 1.61181 1.23041 1.19590 0.90281 1.25728 1.02593 0.90836 1.25655 1.01845 1.00343 0.98865 1.69825 1.33733 1.38447 1.19903 0.85064 0.79131 0.76858 0.78223 1.20677 1.21975 1.19627 1.21376 0.75934 0.86100 0.86496 1.90691 1.47622 1.20505 1.87980 1.23091 1.03413 0.98625 0.88857 0.84026 1.22854 0.96003 1.00486 0.96367 1.23025 1.02080 0.94295 0.95888 1.21466 0.94759 0.97759 0.93890 0.89996 1.19917 0.96675 0.93157 0.98435 1.21180 0.91768 1.01344 0.95601 1.21420 1.00169 0.93234 1.01837 1.17997 0.84756 0.93807 0.98290 1.91467 1.51198 1.90111 1.80213 1.21272 0.95014 1.00636 1.01068 1.21102 0.96833 0.96268 0.97523 0.88702 0.92227 0.93815 0.89951 0.87299 0.89269 0.92803 0.98357 0.95126 0.79370 0.93776 0.86955 0.91497 0.90231 0.86412 0.81416 0.82378 0.84409 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.17 71.98 0.73 -1.54 16 2 C 0.10 1.61 5.82 86.38 0.50 2.11 16 3 N -0.60 -16.36 2.47 -821.81 -2.03 -18.39 16 4 C 0.12 4.36 5.52 86.38 0.48 4.84 16 5 C 0.15 6.63 6.58 86.38 0.57 7.20 16 6 N -0.74 -40.27 5.60 -343.45 -1.92 -42.20 16 7 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 9 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 10 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 11 Si 0.98 47.16 29.55 68.60 2.03 49.18 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 15 C 0.51 14.74 7.20 87.65 0.63 15.37 16 16 O -0.59 -23.42 15.48 -3.03 -0.05 -23.46 16 17 C -0.12 -2.04 2.25 -11.01 -0.02 -2.07 16 18 H 0.14 1.61 6.46 -2.39 -0.02 1.60 16 19 C -0.12 -1.51 6.92 31.12 0.22 -1.29 16 20 C -0.12 -1.20 7.46 31.12 0.23 -0.97 16 21 C -0.06 -1.07 3.30 -11.01 -0.04 -1.11 16 22 H 0.08 2.02 7.38 -2.39 -0.02 2.00 16 23 C -0.08 -1.41 5.29 -19.86 -0.11 -1.52 16 24 C -0.08 -0.97 8.59 22.26 0.19 -0.78 16 25 C -0.15 -2.02 10.03 22.32 0.22 -1.80 16 26 C 0.07 1.32 7.30 22.38 0.16 1.48 16 27 F -0.15 -3.11 17.27 44.97 0.78 -2.33 16 28 C -0.16 -3.17 10.03 22.31 0.22 -2.94 16 29 C -0.10 -2.05 9.71 22.26 0.22 -1.83 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.77 7.24 -2.39 -0.02 0.75 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.44 8.07 -2.38 -0.02 1.42 16 34 H 0.11 1.17 5.79 -2.39 -0.01 1.16 16 35 H 0.09 2.91 8.07 -2.38 -0.02 2.89 16 36 H 0.05 2.24 7.42 -2.39 -0.02 2.22 16 37 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 38 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.37 21.32 7.67 -92.71 -0.71 20.60 16 40 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.11 0.71 7.68 -2.39 -0.02 0.69 16 42 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.12 0.55 6.33 -2.39 -0.02 0.53 16 45 H 0.17 0.78 6.68 -2.91 -0.02 0.76 16 46 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 47 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 48 H 0.12 2.71 8.05 -2.91 -0.02 2.69 16 Total: -1.00 -78.38 394.31 4.86 -73.52 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.26 Total: 26.88 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 5.52 Total: -2.62 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -3.67 Total: -121.17 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -78.38 4.86 -73.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268470243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.730 kcal (2) G-P(sol) polarization free energy of solvation -78.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds