Wall clock time and date at job start Tue Mar 31 2020 18:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47445 * 2 1 4 4 C 1.46499 * 120.00339 * 89.99398 * 3 2 1 5 5 C 1.53001 * 109.47319 * 270.00427 * 4 3 2 6 6 N 1.46497 * 109.46972 * 180.02562 * 5 4 3 7 7 C 1.36942 * 119.99916 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99813 * 359.97438 * 7 6 5 9 9 C 1.38803 * 120.00029 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00218 * 0.27375 * 9 7 6 11 11 Si 1.86808 * 120.00068 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46829 * 60.00108 * 11 9 7 13 13 H 1.48501 * 109.47117 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47219 * 300.00045 * 11 9 7 15 15 C 1.34782 * 119.99785 * 269.99959 * 3 2 1 16 16 O 1.21276 * 119.99868 * 179.97438 * 15 3 2 17 17 C 1.50702 * 119.99885 * 359.97438 * 15 3 2 18 18 H 1.09003 * 112.84841 * 9.08504 * 17 15 3 19 19 C 1.53777 * 113.61377 * 237.77586 * 17 15 3 20 20 C 1.53776 * 87.08251 * 270.88308 * 19 17 15 21 21 C 1.53783 * 113.61027 * 140.27725 * 17 15 3 22 22 H 1.08999 * 113.60757 * 203.66072 * 21 17 15 23 23 C 1.50692 * 113.61569 * 334.48484 * 21 17 15 24 24 C 1.38246 * 119.97564 * 277.34908 * 23 21 17 25 25 C 1.38198 * 120.02468 * 179.72743 * 24 23 21 26 26 C 1.38452 * 119.97759 * 0.52862 * 25 24 23 27 27 F 1.35096 * 120.03149 * 179.72476 * 26 25 24 28 28 C 1.38462 * 119.94762 * 359.75206 * 26 25 24 29 29 C 1.38205 * 119.97270 * 359.97438 * 28 26 25 30 30 H 1.09003 * 109.47542 * 300.00740 * 1 2 3 31 31 H 1.09003 * 109.46691 * 60.00078 * 1 2 3 32 32 H 1.08996 * 109.47606 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47159 * 239.99186 * 2 1 3 34 34 H 1.09003 * 109.46691 * 119.99921 * 2 1 3 35 35 H 1.09003 * 109.46930 * 150.00178 * 4 3 2 36 36 H 1.09001 * 109.46890 * 30.00123 * 4 3 2 37 37 H 1.08996 * 109.46937 * 59.99914 * 5 4 3 38 38 H 1.09001 * 109.46892 * 299.99695 * 5 4 3 39 39 H 0.96998 * 120.00279 * 359.97438 * 6 5 4 40 40 H 0.96998 * 120.00295 * 359.72000 * 10 9 7 41 41 H 1.08999 * 113.61510 * 25.43407 * 19 17 15 42 42 H 1.09002 * 113.61302 * 156.33531 * 19 17 15 43 43 H 1.08997 * 113.62043 * 220.01508 * 20 19 17 44 44 H 1.09008 * 113.68963 * 89.12737 * 20 19 17 45 45 H 1.08007 * 119.98565 * 359.97438 * 24 23 21 46 46 H 1.08000 * 120.01036 * 180.30051 * 25 24 23 47 47 H 1.07998 * 120.01469 * 180.02562 * 28 26 25 48 48 H 1.07998 * 119.98418 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 1.2687 5 6 0.9875 2.7931 1.7103 6 7 1.2319 3.4843 2.9786 7 6 0.2277 4.2021 3.5718 8 1 -0.7441 4.2590 3.1043 9 6 0.4591 4.8566 4.7738 10 7 1.6451 4.7917 5.3408 11 14 -0.9105 5.8363 5.5825 12 1 -2.0545 4.9369 5.8782 13 1 -0.4115 6.4337 6.8472 14 1 -1.3543 6.9167 4.6655 15 6 2.2431 2.0164 -1.1673 16 8 2.6469 3.1600 -1.1673 17 6 1.9924 1.3058 -2.4723 18 1 1.4863 0.3491 -2.3429 19 6 3.2306 1.2318 -3.3812 20 6 2.7829 2.5807 -3.9685 21 6 1.3535 2.2002 -3.5479 22 1 0.8076 1.6442 -4.3101 23 6 0.5617 3.3513 -2.9834 24 6 -0.7420 3.1548 -2.5674 25 6 -1.4673 4.2084 -2.0444 26 6 -0.8915 5.4638 -1.9471 27 9 -1.6014 6.4959 -1.4411 28 6 0.4123 5.6609 -2.3695 29 6 1.1376 4.6043 -2.8870 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0645 2.7985 1.1383 36 1 2.5505 1.3452 2.0284 37 1 0.1856 2.0665 1.8406 38 1 0.6995 3.5198 0.9506 39 1 2.1046 3.4329 3.3987 40 1 2.3563 4.2832 4.9208 41 1 4.1744 1.2836 -2.8384 42 1 3.1978 0.4112 -4.0979 43 1 2.9160 2.6528 -5.0479 44 1 3.1799 3.4442 -3.4346 45 1 -1.1925 2.1764 -2.6476 46 1 -2.4841 4.0535 -1.7150 47 1 0.8626 6.6395 -2.2937 48 1 2.1547 4.7577 -3.2160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268470245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:32 Heat of formation + Delta-G solvation = -34.738716 kcal Electronic energy + Delta-G solvation = -30283.107863 eV Core-core repulsion = 26252.946446 eV Total energy + Delta-G solvation = -4030.161417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.96030 -42.10423 -39.96118 -38.46314 -37.28700 -36.58010 -33.63866 -32.14453 -31.78344 -31.52675 -29.62774 -27.37105 -26.27167 -25.47346 -24.41030 -23.99350 -23.35510 -22.69944 -21.42302 -19.65274 -19.17919 -18.78774 -18.38471 -17.30670 -17.24948 -17.03538 -16.67047 -16.39128 -16.04165 -15.87491 -15.67151 -15.54102 -15.16933 -14.95813 -14.69720 -14.52601 -14.35609 -14.24515 -14.13624 -13.73022 -13.29193 -13.05471 -12.95489 -12.79752 -12.76581 -12.70779 -12.56097 -12.43162 -12.21474 -11.96187 -11.92046 -11.80619 -11.41532 -11.36792 -11.13775 -10.99548 -10.51146 -10.04156 -9.72492 -9.43032 -9.21769 -8.48700 -5.43045 0.14885 0.30580 1.51758 1.62502 1.63262 1.79396 1.96383 2.59166 2.65366 3.29862 3.31599 3.44078 3.53281 3.69807 3.76460 3.81496 3.89927 3.91875 3.99416 4.08401 4.10787 4.11756 4.30672 4.35874 4.38725 4.44583 4.46067 4.53842 4.72249 4.78178 4.85606 4.88457 4.94057 4.95420 4.98705 5.04242 5.05722 5.09766 5.15509 5.20233 5.30491 5.41850 5.45483 5.46649 5.57218 5.66691 5.94987 6.41257 6.49173 6.99666 7.27624 7.88927 7.99624 9.03082 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.004375 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.783756 B = 6397.956211 C = 7961.209694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.125 3.875 5 C 0.163 3.837 6 N -0.754 5.754 7 C -0.337 4.337 8 H 0.057 0.943 9 C -0.098 4.098 10 N -0.969 5.969 11 Si 1.126 2.874 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.520 3.480 16 O -0.566 6.566 17 C -0.130 4.130 18 H 0.131 0.869 19 C -0.107 4.107 20 C -0.144 4.144 21 C -0.044 4.044 22 H 0.148 0.852 23 C -0.085 4.085 24 C -0.086 4.086 25 C -0.166 4.166 26 C 0.062 3.938 27 F -0.158 7.158 28 C -0.175 4.175 29 C -0.061 4.061 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.027 0.973 38 H -0.011 1.011 39 H 0.362 0.638 40 H 0.244 0.756 41 H 0.058 0.942 42 H 0.130 0.870 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.161 0.839 46 H 0.142 0.858 47 H 0.127 0.873 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 -15.331 -24.696 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.000 4.000 5 C 0.035 3.965 6 N -0.399 5.399 7 C -0.469 4.469 8 H 0.075 0.925 9 C -0.289 4.289 10 N -0.616 5.616 11 Si 0.950 3.050 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.310 3.690 16 O -0.444 6.444 17 C -0.151 4.151 18 H 0.148 0.852 19 C -0.144 4.144 20 C -0.181 4.181 21 C -0.062 4.062 22 H 0.166 0.834 23 C -0.086 4.086 24 C -0.104 4.104 25 C -0.185 4.185 26 C 0.043 3.957 27 F -0.137 7.137 28 C -0.194 4.194 29 C -0.079 4.079 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.045 0.955 38 H 0.007 0.993 39 H 0.194 0.806 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.148 0.852 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.179 0.821 46 H 0.159 0.841 47 H 0.145 0.855 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.260 -13.766 -23.496 27.261 hybrid contribution 0.527 0.165 -0.276 0.617 sum -0.734 -13.601 -23.772 27.398 Atomic orbital electron populations 1.22311 0.95661 1.03479 1.01721 1.21953 0.94810 0.80357 1.05220 1.48015 1.65900 1.15353 1.04607 1.21248 0.96215 0.96516 0.85976 1.20877 0.96565 0.93118 0.85923 1.42416 1.12187 1.61367 1.23930 1.20272 0.93246 1.27406 1.05945 0.92505 1.27247 1.03676 1.01897 0.96088 1.70988 1.03080 1.45424 1.42137 0.82676 0.71965 0.75113 0.75278 1.19719 1.21044 1.21148 1.20839 0.76282 0.86079 0.85818 1.90692 1.46686 1.19405 1.87651 1.22655 1.01604 1.00638 0.90229 0.85163 1.22769 0.95046 0.99018 0.97589 1.23135 0.94661 0.98245 1.02034 1.21588 0.94947 0.92999 0.96640 0.83448 1.19995 0.94180 0.95068 0.99322 1.21136 0.93560 0.99004 0.96702 1.21322 1.02246 0.91529 1.03385 1.18138 0.91504 0.85456 1.00592 1.91437 1.78538 1.58284 1.85477 1.21306 0.93282 1.01744 1.03055 1.21068 0.99133 0.91755 0.95953 0.94946 0.92038 0.88719 0.86506 0.89586 0.92605 0.89307 0.95496 0.99323 0.80596 0.94552 0.92333 0.85233 0.88916 0.91109 0.82124 0.84057 0.85480 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.14 71.98 0.73 -2.20 16 2 C 0.10 1.62 5.78 86.38 0.50 2.12 16 3 N -0.61 -16.02 2.47 -821.81 -2.03 -18.06 16 4 C 0.12 4.45 5.56 86.38 0.48 4.93 16 5 C 0.16 7.39 6.58 86.38 0.57 7.96 16 6 N -0.75 -41.85 5.60 -343.46 -1.92 -43.77 16 7 C -0.34 -20.67 9.99 84.03 0.84 -19.83 16 8 H 0.06 3.48 7.83 -2.91 -0.02 3.45 16 9 C -0.10 -6.00 5.50 84.86 0.47 -5.53 16 10 N -0.97 -63.19 13.70 21.65 0.30 -62.89 16 11 Si 1.13 55.00 29.92 68.60 2.05 57.05 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 15 C 0.52 13.93 6.23 87.66 0.55 14.48 16 16 O -0.57 -20.40 12.38 -3.02 -0.04 -20.44 16 17 C -0.13 -1.99 3.66 -11.01 -0.04 -2.03 16 18 H 0.13 1.14 5.72 -2.39 -0.01 1.12 16 19 C -0.11 -1.26 7.66 31.12 0.24 -1.02 16 20 C -0.14 -2.17 6.67 31.12 0.21 -1.96 16 21 C -0.04 -0.64 3.94 -11.01 -0.04 -0.68 16 22 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 23 C -0.09 -1.97 4.04 -19.86 -0.08 -2.05 16 24 C -0.09 -1.97 9.73 22.26 0.22 -1.76 16 25 C -0.17 -4.76 10.03 22.31 0.22 -4.54 16 26 C 0.06 2.13 7.30 22.37 0.16 2.29 16 27 F -0.16 -5.94 17.27 44.97 0.78 -5.17 16 28 C -0.18 -5.73 10.03 22.32 0.22 -5.51 16 29 C -0.06 -1.74 7.33 22.26 0.16 -1.58 16 30 H 0.03 0.79 6.26 -2.39 -0.01 0.77 16 31 H 0.06 0.98 8.01 -2.39 -0.02 0.96 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 1.07 6.13 -2.39 -0.01 1.05 16 34 H 0.09 1.34 7.89 -2.39 -0.02 1.32 16 35 H 0.06 2.28 7.42 -2.39 -0.02 2.26 16 36 H 0.09 2.86 7.89 -2.39 -0.02 2.84 16 37 H 0.03 1.20 6.26 -2.39 -0.01 1.18 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.36 20.38 6.50 -92.71 -0.60 19.78 16 40 H 0.24 15.86 6.77 -92.71 -0.63 15.23 16 41 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 42 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.57 4.89 -2.38 -0.01 1.56 16 45 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 47 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 48 H 0.14 3.67 5.76 -2.91 -0.02 3.66 16 Total: -1.00 -83.46 383.16 5.05 -78.41 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.52 Total: 31.78 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 5.40 Total: -16.91 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -3.66 Total: -124.72 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.04 Total: -20.44 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.78 Total: -5.17 kcal Atomic # 14 Polarization: 55.00 SS G_CDS: 2.05 Total: 57.05 kcal Total: -83.46 5.05 -78.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268470245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.667 kcal (2) G-P(sol) polarization free energy of solvation -83.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds