Wall clock time and date at job start Tue Mar 31 2020 19:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46746 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47082 * 300.00115 * 3 2 1 6 6 H 1.48494 * 109.47053 * 60.00548 * 3 2 1 7 7 C 1.38813 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00057 * 188.65667 * 7 2 1 9 9 N 1.36940 * 119.99715 * 8.64994 * 7 2 1 10 10 C 1.46493 * 120.00116 * 21.48423 * 9 7 2 11 11 C 1.52999 * 109.47217 * 264.23225 * 10 9 7 12 12 C 1.53004 * 117.49781 * 243.62432 * 11 10 9 13 13 C 1.53004 * 60.00044 * 252.50782 * 12 11 10 14 14 C 1.46504 * 119.99557 * 201.48551 * 9 7 2 15 15 C 1.53041 * 109.46269 * 60.00284 * 14 9 7 16 16 C 1.53190 * 109.31175 * 178.61386 * 15 14 9 17 17 N 1.46920 * 108.77986 * 54.63289 * 16 15 14 18 18 C 1.34772 * 120.63325 * 126.36467 * 17 16 15 19 19 O 1.21612 * 119.99643 * 4.26819 * 18 17 16 20 20 C 1.47100 * 120.00344 * 184.53656 * 18 17 16 21 21 C 1.32089 * 118.87350 * 77.88003 * 20 18 17 22 22 C 1.50269 * 122.57584 * 180.34827 * 21 20 18 23 23 O 1.42895 * 110.09432 * 344.35859 * 22 21 20 24 24 C 1.43272 * 113.10228 * 50.52970 * 23 22 21 25 25 C 1.50417 * 118.88131 * 257.61242 * 20 18 17 26 26 C 1.46927 * 118.73748 * 306.64372 * 17 16 15 27 27 C 1.52764 * 109.00719 * 53.30653 * 26 17 16 28 28 H 0.97001 * 120.00208 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47423 * 24.23426 * 10 9 7 30 30 H 1.09004 * 109.47196 * 144.23359 * 10 9 7 31 31 H 1.09001 * 115.55143 * 29.33283 * 11 10 9 32 32 H 1.08995 * 117.50050 * 359.97438 * 12 11 10 33 33 H 1.08999 * 117.49907 * 145.02687 * 12 11 10 34 34 H 1.08992 * 117.50450 * 252.51043 * 13 12 11 35 35 H 1.09006 * 117.49635 * 107.48371 * 13 12 11 36 36 H 1.09003 * 109.44587 * 179.97438 * 14 9 7 37 37 H 1.09005 * 109.49885 * 58.65812 * 15 14 9 38 38 H 1.08994 * 109.52017 * 298.58148 * 15 14 9 39 39 H 1.09003 * 109.58650 * 294.84111 * 16 15 14 40 40 H 1.09001 * 109.58601 * 174.42115 * 16 15 14 41 41 H 1.07994 * 118.71329 * 0.33041 * 21 20 18 42 42 H 1.09003 * 109.36479 * 104.54808 * 22 21 20 43 43 H 1.09000 * 109.37130 * 224.29438 * 22 21 20 44 44 H 1.08998 * 109.64210 * 50.84912 * 24 23 22 45 45 H 1.08997 * 109.64164 * 171.26939 * 24 23 22 46 46 H 1.08996 * 109.45671 * 283.39784 * 25 20 18 47 47 H 1.09008 * 109.45057 * 43.33575 * 25 20 18 48 48 H 1.08994 * 109.58637 * 173.14203 * 26 17 16 49 49 H 1.09001 * 109.58961 * 293.56908 * 26 17 16 50 50 H 1.08999 * 109.56216 * 185.55233 * 27 26 17 51 51 H 1.09005 * 109.35810 * 65.50130 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0810 -1.2075 0.1402 9 7 1.3372 -2.3812 -0.1794 10 6 0.0212 -2.3831 -0.8230 11 6 -1.0706 -2.3644 0.2487 12 6 -2.0029 -3.5750 0.3286 13 6 -2.5214 -2.2453 -0.2227 14 6 1.9333 -3.6408 0.2728 15 6 2.1741 -3.5778 1.7829 16 6 2.7652 -4.9089 2.2576 17 7 3.9682 -5.2011 1.4665 18 6 5.1416 -5.4670 2.0737 19 8 5.1952 -5.5432 3.2863 20 6 6.3587 -5.6593 1.2702 21 6 6.9759 -4.5977 0.7835 22 6 8.2198 -4.6981 -0.0536 23 8 8.7959 -5.9992 0.0771 24 6 7.8517 -7.0559 -0.1338 25 6 6.8613 -7.0575 1.0360 26 6 3.8691 -5.1919 0.0006 27 6 3.2644 -3.8630 -0.4489 28 1 -0.4850 0.8400 0.0004 29 1 -0.0753 -1.5006 -1.4554 30 1 -0.0838 -3.2804 -1.4329 31 1 -0.8033 -1.8721 1.1838 32 1 -1.8387 -4.3845 -0.3826 33 1 -2.3490 -3.8794 1.3163 34 1 -3.2084 -1.6749 0.4023 35 1 -2.6979 -2.1801 -1.2964 36 1 1.2560 -4.4645 0.0471 37 1 1.2290 -3.3961 2.2947 38 1 2.8704 -2.7698 2.0072 39 1 2.0334 -5.7044 2.1173 40 1 3.0304 -4.8354 3.3123 41 1 6.5706 -3.6194 0.9951 42 1 7.9678 -4.5177 -1.0986 43 1 8.9404 -3.9508 0.2786 44 1 7.3183 -6.8892 -1.0697 45 1 8.3743 -8.0115 -0.1752 46 1 7.3580 -7.4202 1.9359 47 1 6.0213 -7.7100 0.7972 48 1 4.8625 -5.3051 -0.4335 49 1 3.2292 -6.0110 -0.3277 50 1 3.0954 -3.8845 -1.5255 51 1 3.9508 -3.0524 -0.2040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269621462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:20 Heat of formation + Delta-G solvation = -9.008276 kcal Electronic energy + Delta-G solvation = -30446.738174 eV Core-core repulsion = 26541.152817 eV Total energy + Delta-G solvation = -3905.585357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.47401 -39.04675 -37.66687 -36.40628 -34.56229 -33.99410 -32.04106 -31.38117 -30.71815 -29.80439 -26.61359 -26.05007 -24.67495 -24.10305 -22.84844 -22.28020 -21.47727 -20.69238 -19.52667 -19.21129 -18.17105 -17.47999 -16.66269 -16.31771 -16.23597 -15.35551 -15.31054 -14.92259 -14.85648 -14.41338 -13.93979 -13.80315 -13.68155 -13.58273 -13.39919 -13.07593 -12.97437 -12.86752 -12.71636 -12.22104 -11.93187 -11.72704 -11.61040 -11.19674 -11.14599 -10.92617 -10.85857 -10.80164 -10.68515 -10.64010 -10.32110 -10.25510 -10.00431 -9.94498 -9.69864 -9.51902 -9.23235 -9.13865 -8.76833 -8.46629 -8.34475 -6.78023 -5.73577 -3.21439 1.58338 2.65345 3.14109 3.34324 3.42451 3.43485 3.60850 4.38000 4.44179 4.52174 4.67905 4.92659 4.94279 4.99772 5.08850 5.15584 5.16044 5.23321 5.33384 5.37856 5.41442 5.45978 5.53267 5.64904 5.68217 5.76971 5.81054 5.93364 6.00550 6.00756 6.08854 6.10840 6.21885 6.33123 6.34900 6.38422 6.44877 6.58235 6.58501 6.69943 6.73115 6.81826 6.91713 7.00261 7.05578 7.31326 7.51722 7.56618 7.76073 7.81804 8.22184 8.39031 9.22870 9.83827 10.31490 11.28210 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.003492 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.849764 B = 8016.626794 C = 9157.711835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.208 3.792 11 C -0.074 4.074 12 C -0.228 4.228 13 C -0.183 4.183 14 C 0.181 3.819 15 C -0.136 4.136 16 C 0.111 3.889 17 N -0.597 5.597 18 C 0.553 3.447 19 O -0.544 6.544 20 C -0.139 4.139 21 C -0.155 4.155 22 C 0.091 3.909 23 O -0.378 6.378 24 C 0.060 3.940 25 C -0.107 4.107 26 C 0.109 3.891 27 C -0.142 4.142 28 H 0.251 0.749 29 H 0.086 0.914 30 H 0.004 0.996 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.058 0.942 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.768 -12.798 -3.132 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.083 3.917 11 C -0.094 4.094 12 C -0.265 4.265 13 C -0.221 4.221 14 C 0.073 3.927 15 C -0.176 4.176 16 C -0.011 4.011 17 N -0.329 5.329 18 C 0.340 3.660 19 O -0.423 6.423 20 C -0.142 4.142 21 C -0.174 4.174 22 C 0.015 3.985 23 O -0.297 6.297 24 C -0.016 4.016 25 C -0.145 4.145 26 C -0.014 4.014 27 C -0.182 4.182 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.022 0.978 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.143 0.857 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.077 0.923 45 H 0.119 0.881 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.858 -12.696 -2.472 15.677 hybrid contribution -0.230 1.224 0.127 1.252 sum 8.627 -11.472 -2.345 14.544 Atomic orbital electron populations 1.70119 1.04537 1.24647 1.55019 1.24950 0.95504 0.97791 1.01335 0.86269 0.79058 0.84510 0.77159 1.20669 1.21815 1.21910 1.19122 0.90866 0.83658 1.43913 0.91453 1.44095 1.17886 1.01604 1.67308 1.20279 0.82273 0.97517 0.91651 1.23002 0.89691 0.93922 1.02795 1.23126 1.10297 0.92403 1.00696 1.22580 1.00723 0.99308 0.99469 1.20202 0.92030 0.89512 0.90951 1.22361 1.01158 0.95091 0.98973 1.21769 0.85170 0.97964 0.96237 1.48175 1.09117 1.68085 1.07540 1.18534 0.83378 0.76473 0.87579 1.90789 1.85695 1.51783 1.13991 1.20795 0.96542 0.96586 1.00262 1.23404 0.97621 0.98869 0.97539 1.21507 0.93224 0.85585 0.98225 1.88126 1.34970 1.14269 1.92327 1.22694 0.91091 0.91504 0.96340 1.20981 0.99727 0.93070 1.00700 1.21750 1.01459 0.99236 0.78974 1.22325 0.99857 0.95289 1.00761 0.93872 0.89591 0.97803 0.87456 0.90699 0.91004 0.90801 0.90564 0.92927 0.90965 0.91390 0.91906 0.89768 0.85707 0.90932 0.87378 0.92333 0.88143 0.89184 0.89751 0.90506 0.91677 0.91131 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.49 8.54 55.49 0.47 -23.01 16 2 C 0.00 0.05 5.15 -17.43 -0.09 -0.04 16 3 Si 0.90 20.85 29.56 -169.99 -5.03 15.82 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.04 8.47 -15.06 -0.13 -6.16 16 8 H 0.07 1.67 6.80 -52.49 -0.36 1.31 16 9 N -0.59 -12.94 2.47 -165.62 -0.41 -13.35 16 10 C 0.21 4.57 5.08 -4.05 -0.02 4.55 16 11 C -0.07 -1.56 4.35 -90.62 -0.39 -1.95 16 12 C -0.23 -4.10 10.18 -26.73 -0.27 -4.37 16 13 C -0.18 -3.49 10.25 -26.73 -0.27 -3.77 16 14 C 0.18 3.27 2.59 -67.89 -0.18 3.09 16 15 C -0.14 -2.42 5.31 -26.61 -0.14 -2.56 16 16 C 0.11 1.71 6.42 -3.71 -0.02 1.69 16 17 N -0.60 -8.72 2.98 -174.43 -0.52 -9.23 16 18 C 0.55 8.62 6.94 -12.67 -0.09 8.54 16 19 O -0.54 -10.50 16.53 5.27 0.09 -10.42 16 20 C -0.14 -1.73 3.93 -103.09 -0.40 -2.14 16 21 C -0.16 -1.78 8.95 -36.44 -0.33 -2.11 16 22 C 0.09 0.85 7.04 35.80 0.25 1.10 16 23 O -0.38 -4.01 10.83 -35.23 -0.38 -4.39 16 24 C 0.06 0.50 6.89 37.30 0.26 0.76 16 25 C -0.11 -1.06 6.09 -27.88 -0.17 -1.23 16 26 C 0.11 1.37 6.28 -3.93 -0.02 1.35 16 27 C -0.14 -2.21 5.29 -26.83 -0.14 -2.35 16 28 H 0.25 6.56 8.31 -40.82 -0.34 6.23 16 29 H 0.09 2.15 6.32 -51.93 -0.33 1.82 16 30 H 0.00 0.08 7.78 -51.93 -0.40 -0.32 16 31 H 0.11 2.66 7.45 -51.93 -0.39 2.27 16 32 H 0.07 1.26 8.03 -51.93 -0.42 0.85 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.37 7.71 -51.93 -0.40 0.97 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.39 7.03 -51.93 -0.36 1.03 16 41 H 0.13 1.53 7.99 -52.49 -0.42 1.11 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 48 H 0.08 0.85 5.84 -51.93 -0.30 0.54 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.07 1.18 7.04 -51.93 -0.37 0.81 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -28.65 395.41 -10.76 -39.42 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.78 Total: 4.80 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.17 Total: -5.60 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.45 Total: -45.60 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.29 Total: -14.80 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.65 -10.76 -39.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269621462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.407 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds