Wall clock time and date at job start Tue Mar 31 2020 19:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46746 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47082 * 300.00115 * 3 2 1 6 6 H 1.48494 * 109.47053 * 60.00548 * 3 2 1 7 7 C 1.38813 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00057 * 188.65667 * 7 2 1 9 9 N 1.36940 * 119.99715 * 8.64994 * 7 2 1 10 10 C 1.46493 * 120.00116 * 21.48423 * 9 7 2 11 11 C 1.52999 * 109.47217 * 264.23225 * 10 9 7 12 12 C 1.53004 * 117.49781 * 243.62432 * 11 10 9 13 13 C 1.53004 * 60.00044 * 252.50782 * 12 11 10 14 14 C 1.46504 * 119.99557 * 201.48551 * 9 7 2 15 15 C 1.53041 * 109.46269 * 60.00284 * 14 9 7 16 16 C 1.53190 * 109.31175 * 178.61386 * 15 14 9 17 17 N 1.46920 * 108.77986 * 54.63289 * 16 15 14 18 18 C 1.34772 * 120.63325 * 126.36467 * 17 16 15 19 19 O 1.21612 * 119.99643 * 4.26819 * 18 17 16 20 20 C 1.47100 * 120.00344 * 184.53656 * 18 17 16 21 21 C 1.32089 * 118.87350 * 77.88003 * 20 18 17 22 22 C 1.50269 * 122.57584 * 180.34827 * 21 20 18 23 23 O 1.42895 * 110.09432 * 344.35859 * 22 21 20 24 24 C 1.43272 * 113.10228 * 50.52970 * 23 22 21 25 25 C 1.50417 * 118.88131 * 257.61242 * 20 18 17 26 26 C 1.46927 * 118.73748 * 306.64372 * 17 16 15 27 27 C 1.52764 * 109.00719 * 53.30653 * 26 17 16 28 28 H 0.97001 * 120.00208 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47423 * 24.23426 * 10 9 7 30 30 H 1.09004 * 109.47196 * 144.23359 * 10 9 7 31 31 H 1.09001 * 115.55143 * 29.33283 * 11 10 9 32 32 H 1.08995 * 117.50050 * 359.97438 * 12 11 10 33 33 H 1.08999 * 117.49907 * 145.02687 * 12 11 10 34 34 H 1.08992 * 117.50450 * 252.51043 * 13 12 11 35 35 H 1.09006 * 117.49635 * 107.48371 * 13 12 11 36 36 H 1.09003 * 109.44587 * 179.97438 * 14 9 7 37 37 H 1.09005 * 109.49885 * 58.65812 * 15 14 9 38 38 H 1.08994 * 109.52017 * 298.58148 * 15 14 9 39 39 H 1.09003 * 109.58650 * 294.84111 * 16 15 14 40 40 H 1.09001 * 109.58601 * 174.42115 * 16 15 14 41 41 H 1.07994 * 118.71329 * 0.33041 * 21 20 18 42 42 H 1.09003 * 109.36479 * 104.54808 * 22 21 20 43 43 H 1.09000 * 109.37130 * 224.29438 * 22 21 20 44 44 H 1.08998 * 109.64210 * 50.84912 * 24 23 22 45 45 H 1.08997 * 109.64164 * 171.26939 * 24 23 22 46 46 H 1.08996 * 109.45671 * 283.39784 * 25 20 18 47 47 H 1.09008 * 109.45057 * 43.33575 * 25 20 18 48 48 H 1.08994 * 109.58637 * 173.14203 * 26 17 16 49 49 H 1.09001 * 109.58961 * 293.56908 * 26 17 16 50 50 H 1.08999 * 109.56216 * 185.55233 * 27 26 17 51 51 H 1.09005 * 109.35810 * 65.50130 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0810 -1.2075 0.1402 9 7 1.3372 -2.3812 -0.1794 10 6 0.0212 -2.3831 -0.8230 11 6 -1.0706 -2.3644 0.2487 12 6 -2.0029 -3.5750 0.3286 13 6 -2.5214 -2.2453 -0.2227 14 6 1.9333 -3.6408 0.2728 15 6 2.1741 -3.5778 1.7829 16 6 2.7652 -4.9089 2.2576 17 7 3.9682 -5.2011 1.4665 18 6 5.1416 -5.4670 2.0737 19 8 5.1952 -5.5432 3.2863 20 6 6.3587 -5.6593 1.2702 21 6 6.9759 -4.5977 0.7835 22 6 8.2198 -4.6981 -0.0536 23 8 8.7959 -5.9992 0.0771 24 6 7.8517 -7.0559 -0.1338 25 6 6.8613 -7.0575 1.0360 26 6 3.8691 -5.1919 0.0006 27 6 3.2644 -3.8630 -0.4489 28 1 -0.4850 0.8400 0.0004 29 1 -0.0753 -1.5006 -1.4554 30 1 -0.0838 -3.2804 -1.4329 31 1 -0.8033 -1.8721 1.1838 32 1 -1.8387 -4.3845 -0.3826 33 1 -2.3490 -3.8794 1.3163 34 1 -3.2084 -1.6749 0.4023 35 1 -2.6979 -2.1801 -1.2964 36 1 1.2560 -4.4645 0.0471 37 1 1.2290 -3.3961 2.2947 38 1 2.8704 -2.7698 2.0072 39 1 2.0334 -5.7044 2.1173 40 1 3.0304 -4.8354 3.3123 41 1 6.5706 -3.6194 0.9951 42 1 7.9678 -4.5177 -1.0986 43 1 8.9404 -3.9508 0.2786 44 1 7.3183 -6.8892 -1.0697 45 1 8.3743 -8.0115 -0.1752 46 1 7.3580 -7.4202 1.9359 47 1 6.0213 -7.7100 0.7972 48 1 4.8625 -5.3051 -0.4335 49 1 3.2292 -6.0110 -0.3277 50 1 3.0954 -3.8845 -1.5255 51 1 3.9508 -3.0524 -0.2040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269621462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:19 Heat of formation + Delta-G solvation = -23.693984 kcal Electronic energy + Delta-G solvation = -30447.374994 eV Core-core repulsion = 26541.152817 eV Total energy + Delta-G solvation = -3906.222177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.59024 -39.96981 -39.12705 -37.89142 -36.11054 -34.98503 -33.67637 -32.13558 -31.95413 -31.42453 -28.00092 -27.46233 -26.03009 -24.84416 -24.11713 -23.75496 -22.97253 -21.99078 -21.11097 -20.62376 -19.24058 -18.52693 -18.02841 -17.57740 -17.28003 -16.99366 -16.20084 -16.11235 -16.01415 -15.80720 -15.45009 -15.21332 -15.09061 -14.81233 -14.74848 -14.32171 -14.18950 -13.76195 -13.62570 -13.50156 -13.25317 -13.22057 -13.00645 -12.72680 -12.49935 -12.48208 -12.34750 -12.23005 -12.14125 -11.98230 -11.92807 -11.78488 -11.48673 -11.27238 -11.18316 -10.90117 -10.51251 -10.45369 -10.09349 -10.04914 -9.70842 -8.58511 -7.68279 -5.14540 0.65037 1.44480 1.46401 1.49340 1.54537 1.99717 2.54922 2.93114 3.36079 3.40183 3.43632 3.59900 3.73515 3.92479 3.94590 4.10431 4.20214 4.26866 4.29764 4.30428 4.38024 4.43575 4.46759 4.47994 4.53998 4.56820 4.67381 4.72959 4.79688 4.81296 4.81679 4.86122 4.87576 4.95326 4.98335 5.06844 5.15562 5.17102 5.23039 5.40260 5.44996 5.49617 5.55087 5.56134 5.64474 5.74876 5.88289 6.03245 6.14714 6.33544 6.48308 7.01290 7.31226 8.02842 8.43592 9.30437 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.003492 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.849764 B = 8016.626794 C = 9157.711835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.045 4.045 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.304 1.304 7 C -0.238 4.238 8 H 0.061 0.939 9 N -0.601 5.601 10 C 0.216 3.784 11 C -0.093 4.093 12 C -0.196 4.196 13 C -0.182 4.182 14 C 0.178 3.822 15 C -0.122 4.122 16 C 0.120 3.880 17 N -0.596 5.596 18 C 0.549 3.451 19 O -0.590 6.590 20 C -0.152 4.152 21 C -0.148 4.148 22 C 0.092 3.908 23 O -0.396 6.396 24 C 0.060 3.940 25 C -0.104 4.104 26 C 0.116 3.884 27 C -0.132 4.132 28 H 0.240 0.760 29 H 0.050 0.950 30 H 0.025 0.975 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.034 0.966 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.122 0.878 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.525 -15.377 -4.900 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.241 4.241 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.231 1.231 7 C -0.368 4.368 8 H 0.079 0.921 9 N -0.321 5.321 10 C 0.090 3.910 11 C -0.114 4.114 12 C -0.233 4.233 13 C -0.219 4.219 14 C 0.071 3.929 15 C -0.163 4.163 16 C -0.003 4.003 17 N -0.327 5.327 18 C 0.339 3.661 19 O -0.472 6.472 20 C -0.155 4.155 21 C -0.167 4.167 22 C 0.016 3.984 23 O -0.315 6.315 24 C -0.016 4.016 25 C -0.142 4.142 26 C -0.006 4.006 27 C -0.172 4.172 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.113 0.887 43 H 0.136 0.864 44 H 0.094 0.906 45 H 0.139 0.861 46 H 0.097 0.903 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.111 0.889 50 H 0.097 0.903 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.629 -15.300 -4.268 18.574 hybrid contribution -0.476 2.037 0.708 2.208 sum 9.153 -13.263 -3.560 16.503 Atomic orbital electron populations 1.70288 1.05103 1.24052 1.56438 1.25452 0.96181 0.99821 1.02602 0.85523 0.78466 0.82099 0.76190 1.20106 1.22208 1.23148 1.19209 0.90717 0.84772 1.42117 0.92087 1.44251 1.18017 1.02188 1.67605 1.20099 0.82570 0.96684 0.91603 1.22579 0.90753 0.97025 1.01042 1.23142 1.06755 0.91772 1.01638 1.22614 0.99013 1.00349 0.99969 1.20411 0.93450 0.88153 0.90860 1.22163 0.99526 0.95497 0.99083 1.21599 0.86060 0.97144 0.95538 1.48267 1.08635 1.67360 1.08434 1.19114 0.84327 0.75417 0.87290 1.90762 1.86402 1.53887 1.16106 1.20814 0.95614 0.98385 1.00705 1.23559 0.98151 0.97905 0.97087 1.21637 0.92208 0.85715 0.98860 1.88113 1.35961 1.14929 1.92477 1.22883 0.90728 0.91849 0.96112 1.21040 1.00579 0.91430 1.01112 1.21851 1.03165 0.98124 0.77478 1.22163 0.97773 0.96314 1.00904 0.94954 0.93158 0.95705 0.91650 0.88592 0.89880 0.90905 0.89835 0.91300 0.92688 0.94721 0.89392 0.91305 0.87136 0.88725 0.86372 0.90558 0.86051 0.90264 0.88266 0.88244 0.88868 0.90262 0.93815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.37 8.54 21.65 0.18 -49.18 16 2 C -0.05 -2.36 5.15 84.86 0.44 -1.93 16 3 Si 0.95 44.05 29.56 68.60 2.03 46.08 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 7 C -0.24 -11.90 8.47 84.03 0.71 -11.19 16 8 H 0.06 3.09 6.80 -2.91 -0.02 3.07 16 9 N -0.60 -26.47 2.47 -677.89 -1.67 -28.14 16 10 C 0.22 9.44 5.08 86.38 0.44 9.88 16 11 C -0.09 -3.94 4.35 -10.79 -0.05 -3.99 16 12 C -0.20 -6.58 10.18 30.60 0.31 -6.27 16 13 C -0.18 -6.75 10.25 30.60 0.31 -6.44 16 14 C 0.18 6.23 2.59 45.02 0.12 6.35 16 15 C -0.12 -4.42 5.31 30.67 0.16 -4.25 16 16 C 0.12 3.61 6.42 86.36 0.55 4.16 16 17 N -0.60 -16.54 2.98 -824.03 -2.45 -18.99 16 18 C 0.55 16.75 6.94 86.57 0.60 17.35 16 19 O -0.59 -23.08 16.53 -4.07 -0.07 -23.15 16 20 C -0.15 -3.56 3.93 -18.59 -0.07 -3.63 16 21 C -0.15 -3.16 8.95 24.59 0.22 -2.94 16 22 C 0.09 1.48 7.04 71.10 0.50 1.98 16 23 O -0.40 -7.26 10.83 -148.98 -1.61 -8.88 16 24 C 0.06 0.79 6.89 72.07 0.50 1.29 16 25 C -0.10 -1.80 6.09 29.85 0.18 -1.62 16 26 C 0.12 2.56 6.28 86.22 0.54 3.10 16 27 C -0.13 -3.85 5.29 30.53 0.16 -3.69 16 28 H 0.24 13.10 8.31 -92.71 -0.77 12.33 16 29 H 0.05 2.55 6.32 -2.39 -0.02 2.54 16 30 H 0.02 0.97 7.78 -2.39 -0.02 0.95 16 31 H 0.07 3.35 7.45 -2.39 -0.02 3.33 16 32 H 0.10 2.85 8.03 -2.39 -0.02 2.83 16 33 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 36 H 0.07 2.21 7.87 -2.39 -0.02 2.19 16 37 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.03 1.45 7.71 -2.39 -0.02 1.43 16 39 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.32 7.03 -2.39 -0.02 2.30 16 41 H 0.11 2.66 7.99 -2.91 -0.02 2.64 16 42 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 45 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.10 1.82 5.84 -2.39 -0.01 1.80 16 49 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.04 1.49 7.04 -2.38 -0.02 1.47 16 Total: -1.00 -65.00 395.41 2.93 -62.07 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.90 Total: 22.04 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.63 Total: -1.85 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -3.94 Total: -96.32 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.68 Total: -32.03 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -65.00 2.93 -62.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269621462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.374 kcal (2) G-P(sol) polarization free energy of solvation -65.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds