Wall clock time and date at job start Tue Mar 31 2020 19:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48503 * 109.47308 * 240.00081 * 3 2 1 5 5 H 1.48504 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47237 * 119.99807 * 3 2 1 7 7 C 1.37877 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00267 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46931 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47103 * 184.95429 * 10 9 7 12 12 C 1.33124 * 117.26259 * 84.66717 * 11 10 9 13 13 O 1.21283 * 118.57800 * 359.81232 * 12 11 10 14 14 C 1.50309 * 122.84957 * 179.79977 * 12 11 10 15 15 C 1.51091 * 109.31622 * 21.03217 * 14 12 11 16 16 C 1.52318 * 110.49706 * 308.80892 * 15 14 12 17 17 H 1.09005 * 109.81394 * 184.23464 * 16 15 14 18 18 C 1.45409 * 117.26836 * 264.64886 * 11 10 9 19 19 H 1.09001 * 111.33372 * 64.72094 * 18 11 10 20 20 C 1.55421 * 108.95933 * 301.29035 * 18 11 10 21 21 C 1.54331 * 103.00761 * 276.96656 * 20 18 11 22 22 N 1.46920 * 110.84298 * 306.00315 * 16 15 14 23 23 C 1.34775 * 125.73330 * 323.11232 * 22 16 15 24 24 O 1.21279 * 119.99824 * 359.97438 * 23 22 16 25 25 C 1.50699 * 119.99733 * 179.97438 * 23 22 16 26 26 C 1.53006 * 109.46735 * 179.97438 * 25 23 22 27 27 C 1.53779 * 113.61371 * 272.49461 * 26 25 23 28 28 C 1.53790 * 87.07946 * 220.02087 * 27 26 25 29 29 C 1.53783 * 87.07980 * 25.43445 * 28 27 26 30 30 H 0.97005 * 119.99330 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46741 * 60.00794 * 9 7 2 32 32 H 1.09000 * 109.47070 * 300.00333 * 9 7 2 33 33 H 1.09008 * 109.46563 * 64.96235 * 10 9 7 34 34 H 1.08994 * 109.47607 * 304.96307 * 10 9 7 35 35 H 1.08994 * 109.51971 * 141.40459 * 14 12 11 36 36 H 1.09001 * 109.51512 * 261.52203 * 14 12 11 37 37 H 1.09001 * 109.65302 * 188.05145 * 15 14 12 38 38 H 1.09005 * 108.26721 * 68.68334 * 15 14 12 39 39 H 1.09006 * 110.70231 * 35.33710 * 20 18 11 40 40 H 1.08994 * 110.70895 * 158.40154 * 20 18 11 41 41 H 1.09003 * 109.89562 * 97.24816 * 21 20 18 42 42 H 1.09002 * 109.89203 * 218.43858 * 21 20 18 43 43 H 1.08995 * 109.47259 * 299.99414 * 25 23 22 44 44 H 1.08996 * 109.47450 * 59.99773 * 25 23 22 45 45 H 1.09000 * 112.84842 * 43.80444 * 26 25 23 46 46 H 1.08999 * 113.61405 * 334.56698 * 27 26 25 47 47 H 1.08999 * 113.61201 * 105.47613 * 27 26 25 48 48 H 1.08998 * 113.61583 * 270.88423 * 28 27 26 49 49 H 1.08997 * 113.68822 * 139.99308 * 28 27 26 50 50 H 1.08999 * 113.61133 * 220.01804 * 29 28 27 51 51 H 1.09001 * 113.69354 * 89.12550 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 7 1.5164 -4.9275 -0.1211 12 6 1.1944 -5.3324 -1.3477 13 8 1.5142 -4.6393 -2.2902 14 6 0.4518 -6.6116 -1.6153 15 6 -0.2811 -7.0353 -0.3638 16 6 0.6656 -7.0502 0.8294 17 1 0.1451 -7.4286 1.7092 18 6 1.2058 -5.6360 1.1101 19 1 0.5197 -5.0639 1.7346 20 6 2.5306 -5.9518 1.8590 21 6 3.0204 -7.2426 1.1692 22 7 1.8468 -7.8777 0.5492 23 6 1.8542 -9.0253 -0.1575 24 8 0.8214 -9.4565 -0.6245 25 6 3.1460 -9.7726 -0.3673 26 6 2.8783 -11.0312 -1.1952 27 6 2.4814 -12.2523 -0.3489 28 6 3.3609 -13.0920 -1.2905 29 6 4.1536 -11.8043 -1.5705 30 1 -0.4849 0.8401 -0.0004 31 1 0.6240 -2.5567 -0.8904 32 1 0.6245 -2.5571 0.8896 33 1 2.8125 -3.6560 0.9289 34 1 2.9282 -3.5553 -0.8444 35 1 -0.2600 -6.4567 -2.4261 36 1 1.1596 -7.3916 -1.8961 37 1 -0.7031 -8.0302 -0.5053 38 1 -1.0851 -6.3223 -0.1808 39 1 3.2514 -5.1453 1.7237 40 1 2.3426 -6.1251 2.9185 41 1 3.7571 -6.9977 0.4040 42 1 3.4587 -7.9142 1.9074 43 1 3.8537 -9.1337 -0.8954 44 1 3.5631 -10.0557 0.5991 45 1 2.2138 -10.8488 -2.0397 46 1 2.8522 -12.2128 0.6753 47 1 1.4210 -12.4978 -0.4072 48 1 2.8276 -13.4744 -2.1608 49 1 3.9414 -13.8596 -0.7789 50 1 4.4431 -11.6883 -2.6149 51 1 4.9819 -11.6412 -0.8810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269874265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:36 Heat of formation + Delta-G solvation = -50.942356 kcal Electronic energy + Delta-G solvation = -30448.783528 eV Core-core repulsion = 26541.379773 eV Total energy + Delta-G solvation = -3907.403755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36268 -39.70350 -38.53597 -37.32814 -34.90136 -34.03458 -32.87713 -31.44300 -30.27770 -29.12475 -28.43788 -25.86876 -25.08693 -24.69561 -23.68178 -22.50714 -21.78757 -20.97532 -19.65791 -19.17061 -17.96713 -17.11145 -17.08339 -16.25654 -16.22551 -15.96151 -15.51373 -15.17855 -14.84100 -14.71854 -14.42586 -14.23477 -13.98918 -13.51200 -13.39489 -13.00727 -12.74293 -12.72873 -12.60935 -12.52473 -12.25909 -12.10624 -11.98464 -11.74547 -11.69723 -11.34815 -11.16183 -10.94914 -10.91806 -10.86806 -10.84874 -10.66810 -10.57725 -10.45838 -9.90420 -9.78019 -9.71903 -9.29582 -8.95351 -8.77320 -8.33048 -8.05424 -5.98761 -4.01442 2.51122 2.77225 3.18165 3.34097 3.38529 3.40110 3.48026 4.05458 4.32098 4.34456 4.36134 4.42889 4.47755 4.58371 4.74208 4.77441 4.84787 4.89285 5.06282 5.08399 5.10137 5.17677 5.33283 5.37391 5.41256 5.42415 5.45742 5.48182 5.56487 5.61699 5.65867 5.67689 5.74077 5.80019 5.84554 5.91885 5.99695 6.01753 6.12568 6.20329 6.25352 6.31603 6.54238 6.85070 6.90974 7.36684 7.64057 7.78137 8.02389 8.05212 8.07014 8.39291 8.74156 9.05016 9.61879 11.12728 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024954 B = 0.002607 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.782755 B =10736.577241 C =10840.210944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.016 3.984 10 C 0.109 3.891 11 N -0.591 5.591 12 C 0.513 3.487 13 O -0.545 6.545 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.133 3.867 17 H 0.090 0.910 18 C 0.137 3.863 19 H 0.105 0.895 20 C -0.149 4.149 21 C 0.104 3.896 22 N -0.614 5.614 23 C 0.531 3.469 24 O -0.533 6.533 25 C -0.128 4.128 26 C -0.094 4.094 27 C -0.133 4.133 28 C -0.143 4.143 29 C -0.139 4.139 30 H 0.261 0.739 31 H 0.023 0.977 32 H 0.013 0.987 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 -24.786 4.961 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.022 4.022 10 C -0.012 4.012 11 N -0.324 5.324 12 C 0.301 3.699 13 O -0.423 6.423 14 C -0.164 4.164 15 C -0.170 4.170 16 C 0.029 3.971 17 H 0.108 0.892 18 C 0.031 3.969 19 H 0.123 0.877 20 C -0.188 4.188 21 C -0.019 4.019 22 N -0.349 5.349 23 C 0.321 3.679 24 O -0.410 6.410 25 C -0.168 4.168 26 C -0.113 4.113 27 C -0.171 4.171 28 C -0.180 4.180 29 C -0.176 4.176 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.854 -24.648 4.161 25.673 hybrid contribution 0.487 1.109 0.203 1.228 sum 6.341 -23.539 4.364 24.765 Atomic orbital electron populations 1.69967 1.06072 1.26682 1.50529 1.24994 0.94844 0.99228 0.95251 0.86635 0.79552 0.83064 0.78588 1.20194 1.21316 1.20262 1.21046 0.92892 0.90787 1.51030 0.92707 1.19320 0.94354 0.90968 0.97524 1.21941 0.96084 0.82284 1.00894 1.47235 1.56900 1.23671 1.04553 1.19959 0.80037 0.87340 0.82586 1.90741 1.54425 1.55624 1.41504 1.21196 1.00376 0.95440 0.99428 1.21370 0.98107 1.04332 0.93186 1.21674 0.87193 0.89201 0.98992 0.89182 1.21924 0.96521 0.91473 0.86977 0.87727 1.23238 0.98491 0.97257 0.99799 1.22056 0.88478 0.94383 0.97015 1.48523 1.09548 1.23149 1.53703 1.20323 0.91342 0.79291 0.76982 1.90659 1.34221 1.66862 1.49221 1.21703 0.95574 0.97424 1.02103 1.22352 0.97900 0.91938 0.99096 1.22932 1.00312 0.95875 0.97957 1.22795 0.98737 0.96507 0.99999 1.22986 0.96713 0.96240 1.01701 0.92963 0.95854 0.96855 0.91742 0.90987 0.88636 0.89508 0.88293 0.90604 0.88380 0.89332 0.91288 0.91116 0.88892 0.89025 0.88136 0.90504 0.91244 0.90225 0.91611 0.91406 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.42 5.20 -27.88 -0.15 0.28 16 10 C 0.11 2.23 4.76 -4.04 -0.02 2.21 16 11 N -0.59 -10.22 2.56 -165.50 -0.42 -10.64 16 12 C 0.51 9.84 7.35 -11.91 -0.09 9.75 16 13 O -0.55 -13.12 16.01 5.55 0.09 -13.03 16 14 C -0.12 -1.92 5.60 -29.03 -0.16 -2.08 16 15 C -0.13 -1.72 4.79 -28.04 -0.13 -1.86 16 16 C 0.13 1.52 3.28 -67.55 -0.22 1.30 16 17 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 18 C 0.14 1.74 3.62 -66.73 -0.24 1.50 16 19 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 20 C -0.15 -1.43 6.37 -24.75 -0.16 -1.59 16 21 C 0.10 0.91 6.48 -2.99 -0.02 0.89 16 22 N -0.61 -6.51 2.86 -164.29 -0.47 -6.98 16 23 C 0.53 5.94 6.42 -10.99 -0.07 5.87 16 24 O -0.53 -7.38 13.03 5.56 0.07 -7.31 16 25 C -0.13 -1.05 4.74 -27.88 -0.13 -1.19 16 26 C -0.09 -0.80 3.15 -89.80 -0.28 -1.08 16 27 C -0.13 -1.05 7.63 -25.92 -0.20 -1.25 16 28 C -0.14 -0.97 8.08 -25.91 -0.21 -1.18 16 29 C -0.14 -0.95 7.64 -25.92 -0.20 -1.15 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.02 0.70 7.86 -51.93 -0.41 0.29 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 1.15 5.98 -51.92 -0.31 0.84 16 34 H 0.07 1.63 7.32 -51.93 -0.38 1.25 16 35 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.09 1.33 6.21 -51.93 -0.32 1.01 16 37 H 0.10 1.32 6.28 -51.93 -0.33 0.99 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.10 1.04 5.97 -51.93 -0.31 0.73 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.59 7.84 -51.93 -0.41 0.19 16 45 H 0.10 1.04 7.67 -51.93 -0.40 0.64 16 46 H 0.08 0.55 7.89 -51.93 -0.41 0.14 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -34.89 391.30 -10.54 -45.43 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.73 Total: -0.63 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.69 Total: -3.07 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.16 Total: -44.12 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.16 Total: -20.34 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.89 -10.54 -45.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269874265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.516 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds