Wall clock time and date at job start Tue Mar 31 2020 19:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48503 * 109.47308 * 240.00081 * 3 2 1 5 5 H 1.48504 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47237 * 119.99807 * 3 2 1 7 7 C 1.37877 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00267 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46931 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47103 * 184.95429 * 10 9 7 12 12 C 1.33124 * 117.26259 * 84.66717 * 11 10 9 13 13 O 1.21283 * 118.57800 * 359.81232 * 12 11 10 14 14 C 1.50309 * 122.84957 * 179.79977 * 12 11 10 15 15 C 1.51091 * 109.31622 * 21.03217 * 14 12 11 16 16 C 1.52318 * 110.49706 * 308.80892 * 15 14 12 17 17 H 1.09005 * 109.81394 * 184.23464 * 16 15 14 18 18 C 1.45409 * 117.26836 * 264.64886 * 11 10 9 19 19 H 1.09001 * 111.33372 * 64.72094 * 18 11 10 20 20 C 1.55421 * 108.95933 * 301.29035 * 18 11 10 21 21 C 1.54331 * 103.00761 * 276.96656 * 20 18 11 22 22 N 1.46920 * 110.84298 * 306.00315 * 16 15 14 23 23 C 1.34775 * 125.73330 * 323.11232 * 22 16 15 24 24 O 1.21279 * 119.99824 * 359.97438 * 23 22 16 25 25 C 1.50699 * 119.99733 * 179.97438 * 23 22 16 26 26 C 1.53006 * 109.46735 * 179.97438 * 25 23 22 27 27 C 1.53779 * 113.61371 * 272.49461 * 26 25 23 28 28 C 1.53790 * 87.07946 * 220.02087 * 27 26 25 29 29 C 1.53783 * 87.07980 * 25.43445 * 28 27 26 30 30 H 0.97005 * 119.99330 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46741 * 60.00794 * 9 7 2 32 32 H 1.09000 * 109.47070 * 300.00333 * 9 7 2 33 33 H 1.09008 * 109.46563 * 64.96235 * 10 9 7 34 34 H 1.08994 * 109.47607 * 304.96307 * 10 9 7 35 35 H 1.08994 * 109.51971 * 141.40459 * 14 12 11 36 36 H 1.09001 * 109.51512 * 261.52203 * 14 12 11 37 37 H 1.09001 * 109.65302 * 188.05145 * 15 14 12 38 38 H 1.09005 * 108.26721 * 68.68334 * 15 14 12 39 39 H 1.09006 * 110.70231 * 35.33710 * 20 18 11 40 40 H 1.08994 * 110.70895 * 158.40154 * 20 18 11 41 41 H 1.09003 * 109.89562 * 97.24816 * 21 20 18 42 42 H 1.09002 * 109.89203 * 218.43858 * 21 20 18 43 43 H 1.08995 * 109.47259 * 299.99414 * 25 23 22 44 44 H 1.08996 * 109.47450 * 59.99773 * 25 23 22 45 45 H 1.09000 * 112.84842 * 43.80444 * 26 25 23 46 46 H 1.08999 * 113.61405 * 334.56698 * 27 26 25 47 47 H 1.08999 * 113.61201 * 105.47613 * 27 26 25 48 48 H 1.08998 * 113.61583 * 270.88423 * 28 27 26 49 49 H 1.08997 * 113.68822 * 139.99308 * 28 27 26 50 50 H 1.08999 * 113.61133 * 220.01804 * 29 28 27 51 51 H 1.09001 * 113.69354 * 89.12550 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 7 1.5164 -4.9275 -0.1211 12 6 1.1944 -5.3324 -1.3477 13 8 1.5142 -4.6393 -2.2902 14 6 0.4518 -6.6116 -1.6153 15 6 -0.2811 -7.0353 -0.3638 16 6 0.6656 -7.0502 0.8294 17 1 0.1451 -7.4286 1.7092 18 6 1.2058 -5.6360 1.1101 19 1 0.5197 -5.0639 1.7346 20 6 2.5306 -5.9518 1.8590 21 6 3.0204 -7.2426 1.1692 22 7 1.8468 -7.8777 0.5492 23 6 1.8542 -9.0253 -0.1575 24 8 0.8214 -9.4565 -0.6245 25 6 3.1460 -9.7726 -0.3673 26 6 2.8783 -11.0312 -1.1952 27 6 2.4814 -12.2523 -0.3489 28 6 3.3609 -13.0920 -1.2905 29 6 4.1536 -11.8043 -1.5705 30 1 -0.4849 0.8401 -0.0004 31 1 0.6240 -2.5567 -0.8904 32 1 0.6245 -2.5571 0.8896 33 1 2.8125 -3.6560 0.9289 34 1 2.9282 -3.5553 -0.8444 35 1 -0.2600 -6.4567 -2.4261 36 1 1.1596 -7.3916 -1.8961 37 1 -0.7031 -8.0302 -0.5053 38 1 -1.0851 -6.3223 -0.1808 39 1 3.2514 -5.1453 1.7237 40 1 2.3426 -6.1251 2.9185 41 1 3.7571 -6.9977 0.4040 42 1 3.4587 -7.9142 1.9074 43 1 3.8537 -9.1337 -0.8954 44 1 3.5631 -10.0557 0.5991 45 1 2.2138 -10.8488 -2.0397 46 1 2.8522 -12.2128 0.6753 47 1 1.4210 -12.4978 -0.4072 48 1 2.8276 -13.4744 -2.1608 49 1 3.9414 -13.8596 -0.7789 50 1 4.4431 -11.6883 -2.6149 51 1 4.9819 -11.6412 -0.8810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269874265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:34 Heat of formation + Delta-G solvation = -71.797924 kcal Electronic energy + Delta-G solvation = -30449.687894 eV Core-core repulsion = 26541.379773 eV Total energy + Delta-G solvation = -3908.308120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.46344 -40.69273 -39.46633 -38.37938 -36.47462 -35.24320 -34.77637 -32.50146 -31.51126 -30.51887 -29.46164 -26.97726 -26.42720 -25.58088 -24.70019 -23.84164 -22.86149 -22.45991 -20.34475 -20.08894 -19.06319 -18.79416 -18.08200 -17.77248 -17.41405 -17.00542 -16.68116 -16.60316 -16.14757 -15.72301 -15.50623 -15.13768 -14.97686 -14.83478 -14.59961 -14.29480 -14.23419 -13.88305 -13.79615 -13.55311 -13.46604 -13.25640 -12.94964 -12.83795 -12.76626 -12.63448 -12.48736 -12.32629 -12.25939 -12.06305 -11.98399 -11.81377 -11.65364 -11.47771 -11.41226 -11.18362 -11.04077 -10.77620 -10.56414 -10.40326 -9.62458 -9.62070 -8.21282 -6.33082 1.38929 1.43498 1.50635 1.62562 1.69589 1.97391 2.05969 2.41934 3.12376 3.17224 3.47798 3.54022 3.63828 3.76509 3.80515 3.84297 3.95726 4.01633 4.08879 4.10355 4.24794 4.33428 4.38751 4.48483 4.53314 4.55948 4.67782 4.69701 4.74072 4.77418 4.80713 4.84811 4.90449 4.93538 4.95576 5.02629 5.04824 5.07883 5.12521 5.16607 5.20210 5.30775 5.37167 5.43907 5.48617 5.63031 5.66534 5.84174 6.18908 6.54686 6.58783 6.82581 7.21465 7.22876 7.36044 8.90722 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024954 B = 0.002607 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.782755 B =10736.577241 C =10840.210944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.027 3.973 10 C 0.126 3.874 11 N -0.583 5.583 12 C 0.505 3.495 13 O -0.606 6.606 14 C -0.112 4.112 15 C -0.126 4.126 16 C 0.137 3.863 17 H 0.118 0.882 18 C 0.120 3.880 19 H 0.107 0.893 20 C -0.139 4.139 21 C 0.103 3.897 22 N -0.615 5.615 23 C 0.525 3.475 24 O -0.566 6.566 25 C -0.121 4.121 26 C -0.101 4.101 27 C -0.133 4.133 28 C -0.141 4.141 29 C -0.131 4.131 30 H 0.263 0.737 31 H -0.030 1.030 32 H 0.000 1.000 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.119 0.881 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.050 0.950 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.746 -25.878 7.589 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.011 4.011 10 C 0.004 3.996 11 N -0.313 5.313 12 C 0.295 3.705 13 O -0.488 6.488 14 C -0.152 4.152 15 C -0.164 4.164 16 C 0.033 3.967 17 H 0.136 0.864 18 C 0.016 3.984 19 H 0.125 0.875 20 C -0.177 4.177 21 C -0.019 4.019 22 N -0.350 5.350 23 C 0.316 3.684 24 O -0.446 6.446 25 C -0.160 4.160 26 C -0.120 4.120 27 C -0.171 4.171 28 C -0.179 4.179 29 C -0.168 4.168 30 H 0.072 0.928 31 H -0.012 1.012 32 H 0.019 0.981 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.141 0.859 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.118 0.882 44 H 0.137 0.863 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.219 -25.773 6.847 27.905 hybrid contribution -0.319 1.432 -0.633 1.598 sum 7.901 -24.341 6.214 26.335 Atomic orbital electron populations 1.70117 1.07970 1.27803 1.51494 1.26013 0.95769 1.03549 0.94604 0.85458 0.78222 0.77775 0.79324 1.19823 1.21009 1.18075 1.21522 0.93644 0.91903 1.50789 0.91674 1.19132 0.94549 0.93164 0.94212 1.21517 0.94508 0.81907 1.01639 1.47232 1.55613 1.22655 1.05765 1.20627 0.79472 0.87970 0.82473 1.90705 1.56876 1.57663 1.43556 1.21093 1.00034 0.93401 1.00694 1.21328 0.98271 1.04040 0.92806 1.21676 0.87406 0.88632 0.98959 0.86410 1.22324 0.99122 0.91778 0.85132 0.87486 1.23248 0.95818 0.97361 1.01308 1.22224 0.87538 0.94588 0.97575 1.48604 1.09832 1.22854 1.53668 1.20887 0.91948 0.79316 0.76290 1.90648 1.35635 1.67808 1.50488 1.21732 0.94034 0.96819 1.03463 1.22314 0.98527 0.92613 0.98569 1.22951 0.99468 0.95822 0.98815 1.22794 0.98565 0.96849 0.99672 1.22978 0.96361 0.95456 1.02046 0.92849 1.01161 0.98149 0.88121 0.93357 0.89283 0.89203 0.88159 0.90900 0.89146 0.85916 0.91871 0.87359 0.88215 0.86293 0.90887 0.89114 0.93077 0.90776 0.90295 0.91613 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.35 13.29 21.45 0.28 -58.06 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 9 C 0.03 1.49 5.20 29.85 0.16 1.64 16 10 C 0.13 5.26 4.76 86.38 0.41 5.67 16 11 N -0.58 -20.30 2.56 -796.82 -2.04 -22.34 16 12 C 0.51 20.18 7.35 87.79 0.65 20.83 16 13 O -0.61 -31.02 16.01 -3.04 -0.05 -31.07 16 14 C -0.11 -3.59 5.60 29.10 0.16 -3.43 16 15 C -0.13 -3.27 4.79 29.75 0.14 -3.13 16 16 C 0.14 2.85 3.28 45.01 0.15 3.00 16 17 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 18 C 0.12 2.85 3.62 46.36 0.17 3.02 16 19 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 20 C -0.14 -2.16 6.37 31.88 0.20 -1.96 16 21 C 0.10 1.40 6.48 86.71 0.56 1.96 16 22 N -0.61 -11.46 2.86 -792.07 -2.26 -13.72 16 23 C 0.52 10.81 6.42 87.66 0.56 11.37 16 24 O -0.57 -15.41 13.03 -3.03 -0.04 -15.45 16 25 C -0.12 -1.69 4.74 29.85 0.14 -1.55 16 26 C -0.10 -1.60 3.15 -10.27 -0.03 -1.63 16 27 C -0.13 -1.91 7.63 31.12 0.24 -1.67 16 28 C -0.14 -1.70 8.08 31.12 0.25 -1.45 16 29 C -0.13 -1.53 7.64 31.12 0.24 -1.29 16 30 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 31 H -0.03 -1.94 7.86 -2.39 -0.02 -1.96 16 32 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.10 3.45 5.98 -2.38 -0.01 3.44 16 34 H 0.05 2.25 7.32 -2.39 -0.02 2.23 16 35 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.09 2.83 6.21 -2.39 -0.01 2.81 16 37 H 0.10 2.64 6.28 -2.39 -0.01 2.63 16 38 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.09 1.60 5.97 -2.38 -0.01 1.59 16 40 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.12 1.03 7.84 -2.39 -0.02 1.01 16 45 H 0.07 1.55 7.67 -2.39 -0.02 1.53 16 46 H 0.09 1.04 7.89 -2.39 -0.02 1.02 16 47 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.10 0.83 8.10 -2.39 -0.02 0.81 16 Total: -1.00 -80.81 391.30 3.52 -77.29 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.91 Total: 15.67 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 4.69 Total: 0.78 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -4.01 Total: -94.12 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -0.09 Total: -46.52 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -80.81 3.52 -77.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269874265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.494 kcal (2) G-P(sol) polarization free energy of solvation -80.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds