Wall clock time and date at job start Tue Mar 31 2020 19:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.46855 * 124.36643 * 269.72692 * 11 10 9 13 13 C 1.54795 * 105.42130 * 163.05285 * 12 11 10 14 14 C 1.53888 * 101.53076 * 25.07536 * 13 12 11 15 15 C 1.53613 * 110.34201 * 216.08729 * 14 13 12 16 16 C 1.55329 * 102.71977 * 216.82589 * 15 14 13 17 17 C 1.54977 * 101.66493 * 34.89177 * 16 15 14 18 18 N 1.46233 * 110.90242 * 96.33422 * 14 13 12 19 19 C 1.34772 * 125.81677 * 299.86334 * 18 14 13 20 20 O 1.21287 * 120.00008 * 359.97438 * 19 18 14 21 21 C 1.50700 * 120.00218 * 180.02562 * 19 18 14 22 22 C 1.52999 * 109.47030 * 179.97438 * 21 19 18 23 23 C 1.53002 * 109.46869 * 179.97438 * 22 21 19 24 24 C 1.52999 * 117.50093 * 243.74631 * 23 22 21 25 25 C 1.52997 * 117.49892 * 175.08782 * 23 22 21 26 26 C 1.34649 * 124.36877 * 90.02879 * 11 10 9 27 27 O 1.21288 * 125.07292 * 0.78305 * 26 11 10 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 30 30 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 31 31 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 32 32 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 33 33 H 1.09000 * 110.23953 * 282.16906 * 12 11 10 34 34 H 1.08991 * 110.24015 * 44.15525 * 12 11 10 35 35 H 1.09010 * 111.19111 * 266.94794 * 13 12 11 36 36 H 1.09005 * 110.90553 * 143.08121 * 13 12 11 37 37 H 1.08993 * 110.75943 * 335.13560 * 15 14 13 38 38 H 1.09003 * 110.75591 * 98.51711 * 15 14 13 39 39 H 1.08997 * 110.98599 * 276.79958 * 16 15 14 40 40 H 1.08995 * 111.01730 * 152.99794 * 16 15 14 41 41 H 1.09001 * 110.35913 * 204.55222 * 17 16 15 42 42 H 1.08994 * 110.45485 * 82.29443 * 17 16 15 43 43 H 1.09002 * 109.47054 * 299.99990 * 21 19 18 44 44 H 1.09002 * 109.47309 * 60.00067 * 21 19 18 45 45 H 1.08994 * 109.47614 * 299.99749 * 22 21 19 46 46 H 1.08999 * 109.47283 * 60.00583 * 22 21 19 47 47 H 1.09002 * 115.55451 * 29.42049 * 23 22 21 48 48 H 1.09006 * 117.49884 * 0.02562 * 24 23 22 49 49 H 1.08998 * 117.50225 * 145.01889 * 24 23 22 50 50 H 1.09000 * 117.50667 * 214.98212 * 25 23 22 51 51 H 1.09002 * 117.49816 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5130 -4.9307 0.0155 12 6 1.1033 -5.6465 1.2306 13 6 0.0195 -6.6515 0.7707 14 6 0.3877 -6.8442 -0.7110 15 6 -0.8821 -7.0074 -1.5599 16 6 -0.4516 -8.0570 -2.6210 17 6 0.5003 -8.9619 -1.7983 18 7 1.2122 -8.0383 -0.8926 19 6 2.4164 -8.2584 -0.3290 20 8 2.9055 -7.4234 0.4022 21 6 3.1558 -9.5416 -0.6081 22 6 4.4860 -9.5384 0.1478 23 6 5.2364 -10.8415 -0.1351 24 6 5.4897 -11.7814 1.0452 25 6 6.6471 -10.9834 0.4398 26 6 1.1337 -5.5939 -1.0932 27 8 1.3590 -5.2369 -2.2302 28 1 -0.4850 0.8400 0.0004 29 1 0.6245 -2.5529 0.8956 30 1 0.6244 -2.5609 -0.8844 31 1 2.8721 -3.6081 -0.8798 32 1 2.8721 -3.6002 0.9002 33 1 1.9533 -6.1758 1.6612 34 1 0.6856 -4.9489 1.9564 35 1 -0.9796 -6.2278 0.8731 36 1 0.1016 -7.5900 1.3190 37 1 -1.7057 -7.3855 -0.9544 38 1 -1.1521 -6.0648 -2.0361 39 1 0.0779 -7.5824 -3.4470 40 1 -1.3107 -8.6215 -2.9833 41 1 1.2068 -9.4669 -2.4570 42 1 -0.0699 -9.6919 -1.2240 43 1 2.5524 -10.3876 -0.2790 44 1 3.3465 -9.6257 -1.6780 45 1 5.0892 -8.6925 -0.1817 46 1 4.2957 -9.4542 1.2177 47 1 5.0410 -11.2951 -1.1068 48 1 5.1214 -11.4717 2.0233 49 1 5.4612 -12.8534 0.8501 50 1 7.3797 -11.5307 -0.1533 51 1 7.0408 -10.1483 1.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270988511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:42 Heat of formation + Delta-G solvation = -46.570343 kcal Electronic energy + Delta-G solvation = -30116.073096 eV Core-core repulsion = 26208.858926 eV Total energy + Delta-G solvation = -3907.214170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.30820 -38.98724 -37.75739 -37.10135 -35.80588 -33.63935 -32.67390 -31.68474 -31.52384 -29.09973 -27.73455 -25.66181 -25.00036 -23.90153 -22.66551 -22.20261 -21.83548 -21.05247 -20.55837 -19.43925 -18.39021 -17.13464 -16.79947 -16.40076 -16.08216 -15.56189 -15.38930 -14.95577 -14.82473 -14.45724 -14.38008 -14.22692 -13.80690 -13.46908 -13.40306 -13.03671 -12.80271 -12.62970 -12.49190 -12.36891 -12.28837 -12.00203 -11.87223 -11.64592 -11.52274 -11.47044 -11.33139 -11.19733 -10.97993 -10.87905 -10.73935 -10.66770 -10.57055 -10.15954 -9.94819 -9.83577 -9.67321 -9.55945 -9.16874 -8.51229 -8.31973 -7.79167 -5.97624 -4.00552 2.49098 2.59682 3.36538 3.37098 3.40019 3.43562 3.50988 3.73415 4.13837 4.37826 4.39597 4.49332 4.52556 4.54667 4.64776 4.67841 4.82697 4.87893 4.95353 5.02592 5.08067 5.16506 5.26522 5.30340 5.35150 5.38300 5.43469 5.49327 5.51419 5.61619 5.69922 5.70813 5.81551 5.83088 5.86644 5.89179 5.98750 6.07681 6.12453 6.19825 6.29260 6.30150 6.63039 6.90766 7.15065 7.39691 7.61961 7.73970 7.97269 8.03118 8.13717 8.40060 8.79542 9.05981 9.62938 11.13877 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.002972 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.170663 B = 9418.884882 C =10866.385024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.131 3.869 11 N -0.590 5.590 12 C 0.101 3.899 13 C -0.135 4.135 14 C 0.131 3.869 15 C -0.111 4.111 16 C -0.132 4.132 17 C 0.101 3.899 18 N -0.599 5.599 19 C 0.522 3.478 20 O -0.518 6.518 21 C -0.128 4.128 22 C -0.074 4.074 23 C -0.154 4.154 24 C -0.182 4.182 25 C -0.181 4.181 26 C 0.516 3.484 27 O -0.534 6.534 28 H 0.261 0.739 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 -27.820 0.221 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.024 4.024 10 C 0.011 3.989 11 N -0.321 5.321 12 C -0.022 4.022 13 C -0.174 4.174 14 C 0.042 3.958 15 C -0.149 4.149 16 C -0.170 4.170 17 C -0.021 4.021 18 N -0.335 5.335 19 C 0.311 3.689 20 O -0.393 6.393 21 C -0.168 4.168 22 C -0.112 4.112 23 C -0.172 4.172 24 C -0.219 4.219 25 C -0.218 4.218 26 C 0.300 3.700 27 O -0.411 6.411 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.122 0.878 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.111 0.889 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.832 -26.979 0.088 27.042 hybrid contribution 0.362 0.925 0.023 0.993 sum 2.194 -26.055 0.111 26.147 Atomic orbital electron populations 1.69964 1.06081 1.26719 1.50543 1.24993 0.94860 0.99250 0.95167 0.86612 0.79542 0.82906 0.78669 1.20158 1.21271 1.20194 1.21067 0.93038 0.90722 1.51104 0.92554 1.19401 0.94421 0.91027 0.97588 1.21747 0.94996 0.80851 1.01303 1.48370 1.54910 1.22658 1.06130 1.22241 0.97601 0.94066 0.88301 1.22929 0.99870 1.00487 0.94067 1.21160 0.91790 0.86041 0.96815 1.22500 0.94547 1.01284 0.96606 1.22835 0.99209 0.96750 0.98181 1.22423 0.95230 0.92538 0.91932 1.48353 1.18665 1.18039 1.48479 1.20509 0.79576 0.89086 0.79741 1.90720 1.65707 1.46383 1.36534 1.21606 0.97189 0.95309 1.02680 1.20932 0.93762 0.95722 1.00769 1.22342 0.98663 0.98130 0.98032 1.23060 1.03430 0.97557 0.97838 1.22975 0.91405 1.03171 1.04234 1.20344 0.79939 0.84653 0.85088 1.90666 1.57962 1.71604 1.20826 0.92939 0.96474 0.96214 0.91505 0.91703 0.89274 0.91007 0.89250 0.89656 0.89691 0.89065 0.89757 0.89569 0.90448 0.90946 0.88934 0.89008 0.90636 0.90915 0.87816 0.88732 0.89024 0.88900 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.39 9.11 -34.44 -0.31 -15.70 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.37 5.30 -27.88 -0.15 0.23 16 10 C 0.13 3.10 5.88 -4.04 -0.02 3.08 16 11 N -0.59 -12.21 2.69 -172.39 -0.46 -12.67 16 12 C 0.10 1.68 6.40 -2.90 -0.02 1.66 16 13 C -0.13 -1.78 5.96 -25.32 -0.15 -1.93 16 14 C 0.13 1.90 0.85 -132.42 -0.11 1.79 16 15 C -0.11 -1.30 5.86 -25.18 -0.15 -1.44 16 16 C -0.13 -1.21 7.09 -24.45 -0.17 -1.39 16 17 C 0.10 0.83 6.71 -2.37 -0.02 0.82 16 18 N -0.60 -7.36 2.85 -157.39 -0.45 -7.81 16 19 C 0.52 6.79 7.46 -10.99 -0.08 6.71 16 20 O -0.52 -8.61 12.02 5.55 0.07 -8.54 16 21 C -0.13 -1.12 4.68 -27.88 -0.13 -1.25 16 22 C -0.07 -0.70 4.79 -26.73 -0.13 -0.83 16 23 C -0.15 -1.16 5.73 -90.62 -0.52 -1.68 16 24 C -0.18 -1.26 10.18 -26.70 -0.27 -1.53 16 25 C -0.18 -1.35 10.25 -26.70 -0.27 -1.63 16 26 C 0.52 10.51 6.20 -11.13 -0.07 10.44 16 27 O -0.53 -12.83 17.42 5.55 0.10 -12.74 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.67 7.93 -51.93 -0.41 1.26 16 32 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.09 1.51 5.90 -51.93 -0.31 1.20 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.06 7.83 -51.92 -0.41 0.66 16 36 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 37 H 0.08 0.76 7.81 -51.93 -0.41 0.35 16 38 H 0.09 1.27 7.78 -51.93 -0.40 0.87 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.52 7.51 -51.93 -0.39 0.13 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 45 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 46 H 0.07 0.74 7.83 -51.93 -0.41 0.34 16 47 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 48 H 0.09 0.66 8.03 -51.93 -0.42 0.25 16 49 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -36.52 405.39 -10.61 -47.13 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -9.01 Total: -0.85 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.68 Total: -1.02 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.18 Total: -47.41 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.16 Total: -21.28 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.52 -10.61 -47.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270988511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.556 kcal (2) G-P(sol) polarization free energy of solvation -36.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds