Wall clock time and date at job start Tue Mar 31 2020 19:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.46855 * 124.36643 * 269.72692 * 11 10 9 13 13 C 1.54795 * 105.42130 * 163.05285 * 12 11 10 14 14 C 1.53888 * 101.53076 * 25.07536 * 13 12 11 15 15 C 1.53613 * 110.34201 * 216.08729 * 14 13 12 16 16 C 1.55329 * 102.71977 * 216.82589 * 15 14 13 17 17 C 1.54977 * 101.66493 * 34.89177 * 16 15 14 18 18 N 1.46233 * 110.90242 * 96.33422 * 14 13 12 19 19 C 1.34772 * 125.81677 * 299.86334 * 18 14 13 20 20 O 1.21287 * 120.00008 * 359.97438 * 19 18 14 21 21 C 1.50700 * 120.00218 * 180.02562 * 19 18 14 22 22 C 1.52999 * 109.47030 * 179.97438 * 21 19 18 23 23 C 1.53002 * 109.46869 * 179.97438 * 22 21 19 24 24 C 1.52999 * 117.50093 * 243.74631 * 23 22 21 25 25 C 1.52997 * 117.49892 * 175.08782 * 23 22 21 26 26 C 1.34649 * 124.36877 * 90.02879 * 11 10 9 27 27 O 1.21288 * 125.07292 * 0.78305 * 26 11 10 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 30 30 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 31 31 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 32 32 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 33 33 H 1.09000 * 110.23953 * 282.16906 * 12 11 10 34 34 H 1.08991 * 110.24015 * 44.15525 * 12 11 10 35 35 H 1.09010 * 111.19111 * 266.94794 * 13 12 11 36 36 H 1.09005 * 110.90553 * 143.08121 * 13 12 11 37 37 H 1.08993 * 110.75943 * 335.13560 * 15 14 13 38 38 H 1.09003 * 110.75591 * 98.51711 * 15 14 13 39 39 H 1.08997 * 110.98599 * 276.79958 * 16 15 14 40 40 H 1.08995 * 111.01730 * 152.99794 * 16 15 14 41 41 H 1.09001 * 110.35913 * 204.55222 * 17 16 15 42 42 H 1.08994 * 110.45485 * 82.29443 * 17 16 15 43 43 H 1.09002 * 109.47054 * 299.99990 * 21 19 18 44 44 H 1.09002 * 109.47309 * 60.00067 * 21 19 18 45 45 H 1.08994 * 109.47614 * 299.99749 * 22 21 19 46 46 H 1.08999 * 109.47283 * 60.00583 * 22 21 19 47 47 H 1.09002 * 115.55451 * 29.42049 * 23 22 21 48 48 H 1.09006 * 117.49884 * 0.02562 * 24 23 22 49 49 H 1.08998 * 117.50225 * 145.01889 * 24 23 22 50 50 H 1.09000 * 117.50667 * 214.98212 * 25 23 22 51 51 H 1.09002 * 117.49816 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5130 -4.9307 0.0155 12 6 1.1033 -5.6465 1.2306 13 6 0.0195 -6.6515 0.7707 14 6 0.3877 -6.8442 -0.7110 15 6 -0.8821 -7.0074 -1.5599 16 6 -0.4516 -8.0570 -2.6210 17 6 0.5003 -8.9619 -1.7983 18 7 1.2122 -8.0383 -0.8926 19 6 2.4164 -8.2584 -0.3290 20 8 2.9055 -7.4234 0.4022 21 6 3.1558 -9.5416 -0.6081 22 6 4.4860 -9.5384 0.1478 23 6 5.2364 -10.8415 -0.1351 24 6 5.4897 -11.7814 1.0452 25 6 6.6471 -10.9834 0.4398 26 6 1.1337 -5.5939 -1.0932 27 8 1.3590 -5.2369 -2.2302 28 1 -0.4850 0.8400 0.0004 29 1 0.6245 -2.5529 0.8956 30 1 0.6244 -2.5609 -0.8844 31 1 2.8721 -3.6081 -0.8798 32 1 2.8721 -3.6002 0.9002 33 1 1.9533 -6.1758 1.6612 34 1 0.6856 -4.9489 1.9564 35 1 -0.9796 -6.2278 0.8731 36 1 0.1016 -7.5900 1.3190 37 1 -1.7057 -7.3855 -0.9544 38 1 -1.1521 -6.0648 -2.0361 39 1 0.0779 -7.5824 -3.4470 40 1 -1.3107 -8.6215 -2.9833 41 1 1.2068 -9.4669 -2.4570 42 1 -0.0699 -9.6919 -1.2240 43 1 2.5524 -10.3876 -0.2790 44 1 3.3465 -9.6257 -1.6780 45 1 5.0892 -8.6925 -0.1817 46 1 4.2957 -9.4542 1.2177 47 1 5.0410 -11.2951 -1.1068 48 1 5.1214 -11.4717 2.0233 49 1 5.4612 -12.8534 0.8501 50 1 7.3797 -11.5307 -0.1533 51 1 7.0408 -10.1483 1.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270988511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:40 Heat of formation + Delta-G solvation = -69.143143 kcal Electronic energy + Delta-G solvation = -30117.051926 eV Core-core repulsion = 26208.858926 eV Total energy + Delta-G solvation = -3908.193000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.49942 -40.16741 -38.58096 -38.05969 -37.46963 -35.64713 -33.90519 -33.13646 -32.34570 -30.83119 -28.97207 -27.04296 -26.42291 -25.01330 -23.67370 -23.23331 -23.09795 -22.21537 -21.33474 -20.74225 -19.66602 -18.75643 -18.13319 -17.74633 -17.10201 -16.85527 -16.66651 -16.28736 -16.11078 -15.83364 -15.68071 -15.05887 -14.88344 -14.80457 -14.55380 -14.34137 -14.31919 -14.13648 -13.83860 -13.52706 -13.41124 -13.33693 -13.03217 -12.88809 -12.66931 -12.48891 -12.41979 -12.23972 -12.15799 -12.12040 -12.07075 -11.98028 -11.87236 -11.74968 -11.48914 -11.17883 -10.93706 -10.80494 -10.70766 -10.64267 -9.67426 -9.51044 -8.27974 -6.41643 1.29760 1.35112 1.39951 1.47726 1.61076 2.03638 2.23034 2.38607 2.92996 3.04551 3.19271 3.31070 3.57050 3.62355 3.78542 3.82225 4.00586 4.04973 4.09767 4.17936 4.19492 4.23873 4.30541 4.41887 4.49611 4.54772 4.56890 4.63199 4.69814 4.72911 4.76960 4.80142 4.82483 4.89400 4.92087 5.04126 5.05917 5.08151 5.11451 5.14398 5.24835 5.29728 5.30732 5.34154 5.39120 5.45622 5.53780 5.75453 6.09759 6.27314 6.50101 6.71491 7.15765 7.18234 7.27813 8.84188 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.002972 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.170663 B = 9418.884882 C =10866.385024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.146 3.854 11 N -0.602 5.602 12 C 0.096 3.904 13 C -0.121 4.121 14 C 0.136 3.864 15 C -0.112 4.112 16 C -0.127 4.127 17 C 0.099 3.901 18 N -0.601 5.601 19 C 0.510 3.490 20 O -0.565 6.565 21 C -0.115 4.115 22 C -0.070 4.070 23 C -0.153 4.153 24 C -0.173 4.173 25 C -0.194 4.194 26 C 0.497 3.503 27 O -0.586 6.586 28 H 0.267 0.733 29 H 0.001 0.999 30 H -0.024 1.024 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.108 0.892 45 H 0.044 0.956 46 H 0.059 0.941 47 H 0.121 0.879 48 H 0.091 0.909 49 H 0.109 0.891 50 H 0.103 0.897 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 -30.826 0.591 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.589 4.589 8 H 0.080 0.920 9 C -0.007 4.007 10 C 0.024 3.976 11 N -0.332 5.332 12 C -0.026 4.026 13 C -0.159 4.159 14 C 0.046 3.954 15 C -0.150 4.150 16 C -0.165 4.165 17 C -0.022 4.022 18 N -0.336 5.336 19 C 0.301 3.699 20 O -0.444 6.444 21 C -0.155 4.155 22 C -0.108 4.108 23 C -0.171 4.171 24 C -0.209 4.209 25 C -0.231 4.231 26 C 0.284 3.716 27 O -0.466 6.466 28 H 0.075 0.925 29 H 0.020 0.980 30 H -0.005 1.005 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.144 0.856 41 H 0.116 0.884 42 H 0.132 0.868 43 H 0.146 0.854 44 H 0.126 0.874 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.139 0.861 48 H 0.109 0.891 49 H 0.127 0.873 50 H 0.122 0.878 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.172 -30.046 0.467 30.073 hybrid contribution 0.572 1.890 -0.110 1.978 sum 1.744 -28.156 0.357 28.212 Atomic orbital electron populations 1.70098 1.07895 1.28153 1.50769 1.26023 0.95879 1.03544 0.94105 0.85395 0.78258 0.77450 0.79300 1.19505 1.20218 1.18569 1.21472 0.93580 0.91882 1.51971 0.92021 1.19151 0.94278 0.92695 0.94570 1.21269 0.94081 0.81641 1.00625 1.48519 1.54666 1.21765 1.08262 1.22447 0.98905 0.94551 0.86736 1.22982 0.99089 1.00688 0.93139 1.21113 0.92254 0.84073 0.97956 1.22585 0.94169 1.00855 0.97427 1.22863 1.00618 0.96362 0.96679 1.22794 0.95480 0.91998 0.91878 1.48579 1.18605 1.17582 1.48813 1.21391 0.79570 0.89984 0.78964 1.90699 1.66780 1.48158 1.38763 1.21624 0.96388 0.93942 1.03498 1.20831 0.94216 0.95760 1.00041 1.22315 0.98274 0.97350 0.99168 1.23117 1.02225 0.98270 0.97328 1.23044 0.91922 1.03350 1.04756 1.21613 0.79416 0.86459 0.84113 1.90609 1.59914 1.73325 1.22778 0.92471 0.98018 1.00541 0.93842 0.90511 0.89422 0.91208 0.87705 0.86604 0.85732 0.92461 0.92929 0.85643 0.88418 0.86807 0.85358 0.87392 0.93757 0.92200 0.86072 0.89079 0.87312 0.87819 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.10 13.29 21.45 0.28 -58.82 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.97 46.39 29.54 68.60 2.03 48.42 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -33.87 9.11 25.60 0.23 -33.63 16 8 H 0.06 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.03 1.83 5.30 29.85 0.16 1.99 16 10 C 0.15 7.39 5.88 86.38 0.51 7.90 16 11 N -0.60 -26.40 2.69 -817.79 -2.20 -28.60 16 12 C 0.10 3.25 6.40 86.92 0.56 3.81 16 13 C -0.12 -2.99 5.96 31.51 0.19 -2.80 16 14 C 0.14 3.84 0.85 3.36 0.00 3.84 16 15 C -0.11 -2.44 5.86 31.60 0.19 -2.26 16 16 C -0.13 -2.01 7.09 32.07 0.23 -1.79 16 17 C 0.10 1.21 6.71 86.84 0.58 1.79 16 18 N -0.60 -13.49 2.85 -770.24 -2.20 -15.69 16 19 C 0.51 12.63 7.46 87.66 0.65 13.29 16 20 O -0.57 -19.14 12.02 -3.05 -0.04 -19.18 16 21 C -0.12 -1.71 4.68 29.85 0.14 -1.58 16 22 C -0.07 -1.28 4.79 30.59 0.15 -1.13 16 23 C -0.15 -2.02 5.73 -10.79 -0.06 -2.08 16 24 C -0.17 -2.02 10.18 30.62 0.31 -1.70 16 25 C -0.19 -2.70 10.25 30.62 0.31 -2.39 16 26 C 0.50 21.35 6.20 87.62 0.54 21.89 16 27 O -0.59 -30.32 17.42 -3.05 -0.05 -30.37 16 28 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 30 H -0.02 -1.59 8.14 -2.38 -0.02 -1.61 16 31 H 0.04 2.36 7.93 -2.39 -0.02 2.34 16 32 H 0.08 3.63 8.14 -2.38 -0.02 3.61 16 33 H 0.09 3.04 5.90 -2.39 -0.01 3.03 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.10 2.27 7.83 -2.38 -0.02 2.25 16 36 H 0.12 2.20 8.07 -2.38 -0.02 2.18 16 37 H 0.12 1.73 7.81 -2.39 -0.02 1.71 16 38 H 0.06 1.65 7.78 -2.39 -0.02 1.63 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 0.85 7.51 -2.39 -0.02 0.83 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.11 1.31 7.86 -2.39 -0.02 1.29 16 45 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 46 H 0.06 1.22 7.83 -2.39 -0.02 1.20 16 47 H 0.12 1.20 8.08 -2.39 -0.02 1.18 16 48 H 0.09 1.13 8.03 -2.38 -0.02 1.11 16 49 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -87.31 405.39 3.87 -83.45 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.89 Total: 15.03 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 5.15 Total: 5.78 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -4.11 Total: -103.11 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.09 Total: -49.55 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -87.31 3.87 -83.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270988511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.302 kcal (2) G-P(sol) polarization free energy of solvation -87.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds