Wall clock time and date at job start Tue Mar 31 2020 17:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.47224 * 2 1 4 4 C 1.52999 * 109.46826 * 120.00149 * 2 1 3 5 5 N 1.46503 * 109.47207 * 175.00179 * 4 2 1 6 6 C 1.36935 * 120.00288 * 179.97438 * 5 4 2 7 7 H 1.07996 * 119.99701 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99844 * 179.72305 * 6 5 4 9 9 N 1.31617 * 120.00363 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99925 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47356 * 89.99498 * 10 8 6 12 12 H 1.48494 * 109.47150 * 210.00073 * 10 8 6 13 13 H 1.48506 * 109.46749 * 329.99638 * 10 8 6 14 14 N 1.46499 * 109.46860 * 239.99745 * 2 1 3 15 15 C 1.46497 * 120.00095 * 306.48959 * 14 2 1 16 16 C 1.34782 * 119.99692 * 126.49562 * 14 2 1 17 17 O 1.21277 * 120.00043 * 8.58245 * 16 14 2 18 18 C 1.50698 * 119.99614 * 188.57902 * 16 14 2 19 19 C 1.52995 * 115.55136 * 83.78672 * 18 16 14 20 20 C 1.50704 * 109.47178 * 305.75161 * 19 18 16 21 21 C 1.38217 * 120.01479 * 259.35859 * 20 19 18 22 22 C 1.38214 * 120.02584 * 179.72172 * 21 20 19 23 23 C 1.38267 * 120.05125 * 0.55117 * 22 21 20 24 24 C 1.38172 * 120.02830 * 359.72278 * 23 22 21 25 25 C 1.38435 * 120.00864 * 79.63098 * 20 19 18 26 26 F 1.35102 * 120.03077 * 0.02562 * 25 20 19 27 27 C 1.52999 * 117.50189 * 298.07566 * 18 16 14 28 28 C 1.53000 * 60.00222 * 252.51217 * 27 18 16 29 29 H 1.08997 * 109.47212 * 294.03720 * 1 2 3 30 30 H 1.08995 * 109.46640 * 54.03641 * 1 2 3 31 31 H 1.08995 * 109.46937 * 174.03527 * 1 2 3 32 32 H 1.08995 * 109.47484 * 54.99624 * 4 2 1 33 33 H 1.09003 * 109.47106 * 294.99373 * 4 2 1 34 34 H 0.97001 * 119.99741 * 359.97438 * 5 4 2 35 35 H 0.97002 * 120.00127 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46719 * 95.39913 * 15 14 2 37 37 H 1.09006 * 109.47462 * 215.39184 * 15 14 2 38 38 H 1.08992 * 109.47637 * 335.39714 * 15 14 2 39 39 H 1.09000 * 109.46967 * 65.74955 * 19 18 16 40 40 H 1.09000 * 109.47229 * 185.75190 * 19 18 16 41 41 H 1.08005 * 119.98383 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.97908 * 180.27430 * 22 21 20 43 43 H 1.08003 * 119.99162 * 179.75063 * 23 22 21 44 44 H 1.07999 * 120.01662 * 180.02562 * 24 23 22 45 45 H 1.09002 * 117.49863 * 0.02562 * 27 18 16 46 46 H 1.08995 * 117.50355 * 145.02013 * 27 18 16 47 47 H 1.08996 * 117.49959 * 252.51179 * 28 27 18 48 48 H 1.09004 * 117.49891 * 107.48889 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1907 6 6 4.1839 -1.4380 2.2073 7 1 3.6468 -1.8424 3.0525 8 6 5.5668 -1.5427 2.1490 9 7 6.2208 -1.0546 1.1163 10 14 6.4996 -2.3776 3.5355 11 1 6.6258 -3.8281 3.2440 12 1 7.8524 -1.7768 3.6540 13 1 5.7618 -2.1913 4.8108 14 7 2.0183 -0.6907 -1.1961 15 6 1.5512 -2.0450 -1.5020 16 6 2.8975 -0.0800 -2.0152 17 8 3.4032 0.9720 -1.6859 18 6 3.2520 -0.7045 -3.3400 19 6 2.2850 -0.4098 -4.4884 20 6 0.8861 -0.7913 -4.0775 21 6 0.3402 -1.9855 -4.5089 22 6 -0.9406 -2.3382 -4.1275 23 6 -1.6815 -1.4918 -3.3234 24 6 -1.1400 -0.2948 -2.8956 25 6 0.1454 0.0571 -3.2724 26 9 0.6757 1.2274 -2.8551 27 6 3.9229 -2.0794 -3.3161 28 6 4.7371 -0.8373 -3.6836 29 1 -0.3633 0.4186 0.9385 30 1 -0.3632 0.6035 -0.8318 31 1 -0.3633 -1.0221 -0.1068 32 1 1.6053 -1.7198 1.2952 33 1 1.7517 -0.1583 2.1370 34 1 3.9824 -0.4628 0.4317 35 1 7.1872 -1.1281 1.0754 36 1 0.7147 -1.9921 -2.1990 37 1 2.3631 -2.6167 -1.9516 38 1 1.2279 -2.5341 -0.5831 39 1 2.3166 0.6534 -4.7262 40 1 2.5761 -0.9873 -5.3658 41 1 0.9162 -2.6452 -5.1409 42 1 -1.3648 -3.2736 -4.4614 43 1 -2.6837 -1.7665 -3.0293 44 1 -1.7187 0.3660 -2.2672 45 1 4.1074 -2.5325 -2.3420 46 1 3.6752 -2.7744 -4.1183 47 1 5.0250 -0.7150 -4.7277 48 1 5.4576 -0.4730 -2.9513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271136567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:49 Heat of formation + Delta-G solvation = -0.621860 kcal Electronic energy + Delta-G solvation = -31672.477556 eV Core-core repulsion = 27643.795557 eV Total energy + Delta-G solvation = -4028.681999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.82729 -40.42603 -38.87534 -37.12888 -35.76858 -33.82769 -32.56873 -31.58825 -30.70055 -29.88643 -27.52936 -26.39548 -25.53394 -23.73898 -22.91522 -22.39511 -22.29406 -21.69507 -19.84208 -18.24739 -17.57716 -16.98951 -16.70412 -16.40888 -16.02919 -15.98793 -15.45635 -14.82295 -14.66496 -14.33150 -14.07644 -13.89242 -13.70727 -13.34621 -13.22233 -13.17476 -12.87362 -12.59739 -12.49438 -12.22856 -12.11405 -12.00054 -11.88581 -11.69128 -11.61534 -11.30906 -11.15898 -11.10947 -10.79044 -10.67775 -10.44443 -10.26447 -9.98290 -9.86597 -9.60327 -9.07488 -9.03914 -8.78220 -8.65570 -7.98820 -6.79323 -5.64423 -2.93155 1.04216 1.08723 3.19486 3.39329 3.47483 3.48535 3.52773 3.55014 3.86483 4.23673 4.47683 4.63551 4.66376 4.73292 4.83634 4.90970 5.03145 5.13888 5.15641 5.23945 5.34496 5.52195 5.56606 5.59115 5.63506 5.65697 5.70082 5.77735 5.79334 5.88276 5.92471 5.97850 6.05265 6.07662 6.18692 6.19700 6.22089 6.25699 6.26444 6.29621 6.43617 6.49935 6.62136 6.77644 6.85393 7.19448 7.77288 7.97524 8.53229 8.81468 9.64740 10.26024 10.62483 11.57439 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.004430 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.514660 B = 6318.444648 C = 6989.486686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.238 4.238 7 H 0.067 0.933 8 C -0.013 4.013 9 N -0.927 5.927 10 Si 0.904 3.096 11 H -0.292 1.292 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.588 5.588 15 C 0.068 3.932 16 C 0.557 3.443 17 O -0.525 6.525 18 C -0.151 4.151 19 C -0.032 4.032 20 C -0.113 4.113 21 C -0.086 4.086 22 C -0.133 4.133 23 C -0.095 4.095 24 C -0.153 4.153 25 C 0.117 3.883 26 F -0.128 7.128 27 C -0.163 4.163 28 C -0.141 4.141 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.017 0.983 33 H 0.024 0.976 34 H 0.390 0.610 35 H 0.253 0.747 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.689 -3.249 -15.681 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.027 3.973 3 H 0.113 0.887 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.370 4.370 7 H 0.085 0.915 8 C -0.209 4.209 9 N -0.576 5.576 10 Si 0.735 3.265 11 H -0.219 1.219 12 H -0.218 1.218 13 H -0.209 1.209 14 N -0.321 5.321 15 C -0.075 4.075 16 C 0.344 3.656 17 O -0.400 6.400 18 C -0.154 4.154 19 C -0.070 4.070 20 C -0.114 4.114 21 C -0.105 4.105 22 C -0.152 4.152 23 C -0.113 4.113 24 C -0.172 4.172 25 C 0.098 3.902 26 F -0.106 7.106 27 C -0.200 4.200 28 C -0.179 4.179 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.224 0.776 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.127 0.873 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.351 -2.701 -15.317 22.567 hybrid contribution 0.775 -0.318 0.804 1.161 sum -15.577 -3.020 -14.513 21.503 Atomic orbital electron populations 1.22225 0.95527 1.01929 1.02057 1.21277 0.92913 0.98204 0.84871 0.88686 1.20997 0.87233 0.96527 0.93726 1.42331 0.99679 1.69962 1.25190 1.19209 0.89481 1.29225 0.99080 0.91484 1.24725 0.96418 1.01821 0.97974 1.69703 1.07014 1.50876 1.29966 0.86238 0.79517 0.78943 0.81780 1.21918 1.21845 1.20891 1.47455 1.44535 1.15911 1.24172 1.22096 1.00311 0.83680 1.01406 1.19174 0.78171 0.84412 0.83847 1.90700 1.50943 1.23544 1.74819 1.21319 0.96353 1.02621 0.95082 1.19957 0.88687 1.02734 0.95586 1.19854 0.96595 0.95411 0.99548 1.20892 0.95369 0.94907 0.99285 1.21128 0.94666 1.00107 0.99267 1.20960 0.99952 0.93322 0.97097 1.21157 0.94448 0.98964 1.02590 1.17552 0.92414 0.83204 0.97050 1.91568 1.86242 1.44756 1.88033 1.23187 1.02806 0.90051 1.03906 1.23048 0.91765 1.00376 1.02690 0.91649 0.92404 0.92424 0.96528 0.95859 0.77556 0.93699 0.92585 0.90845 0.91479 0.89922 0.89583 0.85209 0.85548 0.85367 0.84939 0.87349 0.88342 0.88314 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.43 37.16 0.31 -1.89 16 2 C 0.13 2.41 2.74 -67.93 -0.19 2.22 16 3 H 0.10 2.03 6.99 -51.93 -0.36 1.67 16 4 C 0.14 3.10 5.65 -4.04 -0.02 3.08 16 5 N -0.73 -19.71 5.43 -59.91 -0.33 -20.04 16 6 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -29.30 13.06 55.49 0.72 -28.58 16 10 Si 0.90 23.17 29.55 -169.99 -5.02 18.15 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 N -0.59 -10.29 1.18 -173.93 -0.21 -10.50 16 15 C 0.07 1.00 7.92 59.85 0.47 1.47 16 16 C 0.56 10.77 3.76 -10.98 -0.04 10.73 16 17 O -0.52 -12.61 16.14 5.56 0.09 -12.52 16 18 C -0.15 -2.27 1.47 -155.66 -0.23 -2.50 16 19 C -0.03 -0.38 5.11 -27.88 -0.14 -0.52 16 20 C -0.11 -1.27 3.29 -104.56 -0.34 -1.61 16 21 C -0.09 -0.75 8.66 -39.60 -0.34 -1.10 16 22 C -0.13 -1.03 9.53 -39.58 -0.38 -1.41 16 23 C -0.10 -0.78 9.73 -39.59 -0.39 -1.16 16 24 C -0.15 -1.55 7.89 -39.51 -0.31 -1.86 16 25 C 0.12 1.46 4.10 -39.42 -0.16 1.30 16 26 F -0.13 -2.00 13.88 2.25 0.03 -1.97 16 27 C -0.16 -2.23 7.94 -26.73 -0.21 -2.44 16 28 C -0.14 -2.11 9.91 -26.73 -0.26 -2.37 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.76 4.35 -51.93 -0.23 0.53 16 31 H 0.06 0.73 7.12 -51.93 -0.37 0.36 16 32 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.39 11.44 6.47 -40.82 -0.26 11.17 16 35 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.06 0.69 2.97 -51.93 -0.15 0.53 16 37 H 0.07 1.07 4.44 -51.93 -0.23 0.84 16 38 H 0.07 1.01 6.63 -51.93 -0.34 0.67 16 39 H 0.08 1.06 7.96 -51.93 -0.41 0.64 16 40 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 41 H 0.13 0.87 8.03 -52.48 -0.42 0.44 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.13 1.22 7.26 -52.49 -0.38 0.84 16 45 H 0.11 1.80 7.11 -51.93 -0.37 1.43 16 46 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -35.56 369.55 -8.45 -44.00 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.82 Total: 11.57 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.48 Total: -5.69 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.19 Total: -59.11 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.03 Total: -1.97 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.56 -8.45 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271136567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.380 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds