Wall clock time and date at job start Tue Mar 31 2020 17:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.47224 * 2 1 4 4 C 1.52999 * 109.46826 * 120.00149 * 2 1 3 5 5 N 1.46503 * 109.47207 * 175.00179 * 4 2 1 6 6 C 1.36935 * 120.00288 * 179.97438 * 5 4 2 7 7 H 1.07996 * 119.99701 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99844 * 179.72305 * 6 5 4 9 9 N 1.31617 * 120.00363 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99925 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47356 * 89.99498 * 10 8 6 12 12 H 1.48494 * 109.47150 * 210.00073 * 10 8 6 13 13 H 1.48506 * 109.46749 * 329.99638 * 10 8 6 14 14 N 1.46499 * 109.46860 * 239.99745 * 2 1 3 15 15 C 1.46497 * 120.00095 * 306.48959 * 14 2 1 16 16 C 1.34782 * 119.99692 * 126.49562 * 14 2 1 17 17 O 1.21277 * 120.00043 * 8.58245 * 16 14 2 18 18 C 1.50698 * 119.99614 * 188.57902 * 16 14 2 19 19 C 1.52995 * 115.55136 * 83.78672 * 18 16 14 20 20 C 1.50704 * 109.47178 * 305.75161 * 19 18 16 21 21 C 1.38217 * 120.01479 * 259.35859 * 20 19 18 22 22 C 1.38214 * 120.02584 * 179.72172 * 21 20 19 23 23 C 1.38267 * 120.05125 * 0.55117 * 22 21 20 24 24 C 1.38172 * 120.02830 * 359.72278 * 23 22 21 25 25 C 1.38435 * 120.00864 * 79.63098 * 20 19 18 26 26 F 1.35102 * 120.03077 * 0.02562 * 25 20 19 27 27 C 1.52999 * 117.50189 * 298.07566 * 18 16 14 28 28 C 1.53000 * 60.00222 * 252.51217 * 27 18 16 29 29 H 1.08997 * 109.47212 * 294.03720 * 1 2 3 30 30 H 1.08995 * 109.46640 * 54.03641 * 1 2 3 31 31 H 1.08995 * 109.46937 * 174.03527 * 1 2 3 32 32 H 1.08995 * 109.47484 * 54.99624 * 4 2 1 33 33 H 1.09003 * 109.47106 * 294.99373 * 4 2 1 34 34 H 0.97001 * 119.99741 * 359.97438 * 5 4 2 35 35 H 0.97002 * 120.00127 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46719 * 95.39913 * 15 14 2 37 37 H 1.09006 * 109.47462 * 215.39184 * 15 14 2 38 38 H 1.08992 * 109.47637 * 335.39714 * 15 14 2 39 39 H 1.09000 * 109.46967 * 65.74955 * 19 18 16 40 40 H 1.09000 * 109.47229 * 185.75190 * 19 18 16 41 41 H 1.08005 * 119.98383 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.97908 * 180.27430 * 22 21 20 43 43 H 1.08003 * 119.99162 * 179.75063 * 23 22 21 44 44 H 1.07999 * 120.01662 * 180.02562 * 24 23 22 45 45 H 1.09002 * 117.49863 * 0.02562 * 27 18 16 46 46 H 1.08995 * 117.50355 * 145.02013 * 27 18 16 47 47 H 1.08996 * 117.49959 * 252.51179 * 28 27 18 48 48 H 1.09004 * 117.49891 * 107.48889 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1907 6 6 4.1839 -1.4380 2.2073 7 1 3.6468 -1.8424 3.0525 8 6 5.5668 -1.5427 2.1490 9 7 6.2208 -1.0546 1.1163 10 14 6.4996 -2.3776 3.5355 11 1 6.6258 -3.8281 3.2440 12 1 7.8524 -1.7768 3.6540 13 1 5.7618 -2.1913 4.8108 14 7 2.0183 -0.6907 -1.1961 15 6 1.5512 -2.0450 -1.5020 16 6 2.8975 -0.0800 -2.0152 17 8 3.4032 0.9720 -1.6859 18 6 3.2520 -0.7045 -3.3400 19 6 2.2850 -0.4098 -4.4884 20 6 0.8861 -0.7913 -4.0775 21 6 0.3402 -1.9855 -4.5089 22 6 -0.9406 -2.3382 -4.1275 23 6 -1.6815 -1.4918 -3.3234 24 6 -1.1400 -0.2948 -2.8956 25 6 0.1454 0.0571 -3.2724 26 9 0.6757 1.2274 -2.8551 27 6 3.9229 -2.0794 -3.3161 28 6 4.7371 -0.8373 -3.6836 29 1 -0.3633 0.4186 0.9385 30 1 -0.3632 0.6035 -0.8318 31 1 -0.3633 -1.0221 -0.1068 32 1 1.6053 -1.7198 1.2952 33 1 1.7517 -0.1583 2.1370 34 1 3.9824 -0.4628 0.4317 35 1 7.1872 -1.1281 1.0754 36 1 0.7147 -1.9921 -2.1990 37 1 2.3631 -2.6167 -1.9516 38 1 1.2279 -2.5341 -0.5831 39 1 2.3166 0.6534 -4.7262 40 1 2.5761 -0.9873 -5.3658 41 1 0.9162 -2.6452 -5.1409 42 1 -1.3648 -3.2736 -4.4614 43 1 -2.6837 -1.7665 -3.0293 44 1 -1.7187 0.3660 -2.2672 45 1 4.1074 -2.5325 -2.3420 46 1 3.6752 -2.7744 -4.1183 47 1 5.0250 -0.7150 -4.7277 48 1 5.4576 -0.4730 -2.9513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271136567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:48 Heat of formation + Delta-G solvation = -22.565551 kcal Electronic energy + Delta-G solvation = -31673.429106 eV Core-core repulsion = 27643.795557 eV Total energy + Delta-G solvation = -4029.633549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.81358 -41.65872 -39.78249 -38.45543 -37.31387 -35.80519 -33.50053 -33.25813 -31.79008 -31.29783 -28.47320 -27.65641 -27.33776 -25.16966 -24.29317 -23.62017 -23.45084 -22.55321 -21.26956 -19.67202 -19.09830 -18.41018 -17.95383 -17.41951 -17.32117 -16.95834 -16.73942 -16.41102 -15.92832 -15.69696 -15.33409 -15.24750 -14.98851 -14.81964 -14.39361 -14.20680 -14.04329 -14.03482 -13.73670 -13.66552 -13.41961 -13.22295 -13.14593 -12.98489 -12.80909 -12.69471 -12.52588 -12.40148 -12.28851 -12.15224 -11.89540 -11.83789 -11.72568 -11.49096 -11.01526 -10.97327 -10.50074 -9.78658 -9.45206 -9.38482 -9.01614 -7.93959 -5.25040 0.32559 0.39964 1.41954 1.45464 1.53941 1.76017 2.08244 2.53297 2.67318 2.78577 3.37248 3.46992 3.53252 3.60594 3.78806 3.86277 3.93267 4.03039 4.08760 4.12502 4.26312 4.28019 4.33319 4.44754 4.47142 4.52529 4.68497 4.73009 4.73559 4.76328 4.77505 4.82849 4.89333 4.91234 4.96261 4.98146 5.10977 5.13700 5.21112 5.25587 5.28674 5.38545 5.44134 5.54172 5.60863 5.75341 6.09088 6.24650 6.56585 7.30353 7.36736 8.08825 8.33215 9.28755 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.004430 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.514660 B = 6318.444648 C = 6989.486686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.135 3.865 3 H 0.054 0.946 4 C 0.142 3.858 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.077 0.923 8 C -0.077 4.077 9 N -0.968 5.968 10 Si 0.978 3.022 11 H -0.282 1.282 12 H -0.298 1.298 13 H -0.269 1.269 14 N -0.582 5.582 15 C 0.066 3.934 16 C 0.546 3.454 17 O -0.591 6.591 18 C -0.153 4.153 19 C -0.024 4.024 20 C -0.129 4.129 21 C -0.082 4.082 22 C -0.125 4.125 23 C -0.090 4.090 24 C -0.161 4.161 25 C 0.081 3.919 26 F -0.159 7.159 27 C -0.139 4.139 28 C -0.156 4.156 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.024 0.976 34 H 0.374 0.626 35 H 0.248 0.752 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.126 0.874 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.156 0.844 44 H 0.135 0.865 45 H 0.073 0.927 46 H 0.150 0.850 47 H 0.137 0.863 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.378 -6.726 -17.013 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.072 0.928 4 C 0.014 3.986 5 N -0.385 5.385 6 C -0.379 4.379 7 H 0.095 0.905 8 C -0.269 4.269 9 N -0.618 5.618 10 Si 0.806 3.194 11 H -0.209 1.209 12 H -0.225 1.225 13 H -0.194 1.194 14 N -0.313 5.313 15 C -0.075 4.075 16 C 0.335 3.665 17 O -0.471 6.471 18 C -0.156 4.156 19 C -0.062 4.062 20 C -0.129 4.129 21 C -0.100 4.100 22 C -0.143 4.143 23 C -0.108 4.108 24 C -0.180 4.180 25 C 0.062 3.938 26 F -0.138 7.138 27 C -0.176 4.176 28 C -0.193 4.193 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.206 0.794 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.174 0.826 44 H 0.152 0.848 45 H 0.092 0.908 46 H 0.168 0.832 47 H 0.155 0.845 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.119 -6.223 -16.630 26.093 hybrid contribution 1.509 0.771 1.238 2.098 sum -17.611 -5.452 -15.392 24.016 Atomic orbital electron populations 1.22123 0.91469 1.03493 1.03175 1.21123 0.95839 0.95683 0.84235 0.92780 1.21204 0.84436 0.97572 0.95352 1.42569 1.01919 1.69752 1.24291 1.19659 0.90101 1.28552 0.99577 0.90531 1.25643 0.97464 1.03102 1.00687 1.69915 1.06835 1.52779 1.32310 0.85081 0.77462 0.77876 0.78948 1.20866 1.22495 1.19405 1.47498 1.43773 1.16771 1.23214 1.22291 1.01362 0.81847 1.02037 1.20012 0.77325 0.83787 0.85362 1.90653 1.53431 1.26568 1.76492 1.21350 0.97017 1.03304 0.93968 1.19964 0.88629 1.02317 0.95260 1.19915 0.96168 0.96532 1.00332 1.21251 0.96031 0.93883 0.98836 1.21561 0.93993 1.00909 0.97832 1.21339 1.01090 0.92144 0.96204 1.21305 0.93645 1.00063 1.02999 1.18025 0.93849 0.83008 0.98952 1.91496 1.86867 1.46708 1.88703 1.23215 1.00835 0.89809 1.03693 1.23060 0.91040 1.01753 1.03433 0.90358 0.91629 0.90381 0.94845 0.95843 0.79372 0.94287 0.89529 0.90681 0.91655 0.91961 0.85627 0.82281 0.82263 0.82619 0.84763 0.90813 0.83232 0.84472 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.43 71.98 0.61 -3.29 16 2 C 0.14 5.19 2.74 44.99 0.12 5.31 16 3 H 0.05 2.52 6.99 -2.39 -0.02 2.51 16 4 C 0.14 6.24 5.65 86.38 0.49 6.73 16 5 N -0.74 -41.86 5.43 -343.46 -1.87 -43.73 16 6 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 7 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 8 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 9 N -0.97 -63.82 13.06 21.65 0.28 -63.54 16 10 Si 0.98 48.46 29.55 68.60 2.03 50.48 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 14 N -0.58 -20.97 1.18 -822.59 -0.97 -21.95 16 15 C 0.07 1.86 7.92 127.77 1.01 2.87 16 16 C 0.55 22.46 3.76 87.66 0.33 22.79 16 17 O -0.59 -31.30 16.14 -3.02 -0.05 -31.35 16 18 C -0.15 -4.67 1.47 -52.93 -0.08 -4.75 16 19 C -0.02 -0.55 5.11 29.85 0.15 -0.39 16 20 C -0.13 -2.60 3.29 -19.82 -0.07 -2.66 16 21 C -0.08 -1.05 8.66 22.26 0.19 -0.85 16 22 C -0.13 -1.26 9.53 22.27 0.21 -1.04 16 23 C -0.09 -1.08 9.73 22.26 0.22 -0.86 16 24 C -0.16 -2.94 7.89 22.31 0.18 -2.77 16 25 C 0.08 1.96 4.10 22.38 0.09 2.05 16 26 F -0.16 -5.29 13.88 44.97 0.62 -4.67 16 27 C -0.14 -3.66 7.94 30.59 0.24 -3.42 16 28 C -0.16 -4.78 9.91 30.60 0.30 -4.48 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.71 4.35 -2.39 -0.01 1.70 16 31 H 0.08 1.78 7.12 -2.39 -0.02 1.77 16 32 H 0.03 1.38 7.13 -2.39 -0.02 1.36 16 33 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.37 23.36 6.47 -92.71 -0.60 22.76 16 35 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 36 H 0.09 1.89 2.97 -2.38 -0.01 1.89 16 37 H 0.07 2.10 4.44 -2.38 -0.01 2.09 16 38 H 0.06 1.85 6.63 -2.39 -0.02 1.83 16 39 H 0.06 1.63 7.96 -2.39 -0.02 1.61 16 40 H 0.13 1.75 7.94 -2.39 -0.02 1.73 16 41 H 0.16 1.10 8.03 -2.91 -0.02 1.07 16 42 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 43 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 44 H 0.13 2.29 7.26 -2.91 -0.02 2.27 16 45 H 0.07 2.50 7.11 -2.39 -0.02 2.48 16 46 H 0.15 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.14 3.05 8.14 -2.39 -0.02 3.03 16 48 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -85.57 369.55 5.74 -79.82 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: 0.39 Total: 37.83 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.31 Total: -2.91 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -2.56 Total: -129.21 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.05 Total: -31.35 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.62 Total: -4.67 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.48 kcal Total: -85.57 5.74 -79.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271136567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.259 kcal (2) G-P(sol) polarization free energy of solvation -85.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds