Wall clock time and date at job start Tue Mar 31 2020 19:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.53950 * 113.74085 * 276.67910 * 9 7 2 11 11 N 1.47584 * 86.11415 * 222.04808 * 10 9 7 12 12 C 1.34774 * 134.48967 * 204.63933 * 11 10 9 13 13 O 1.21278 * 120.00066 * 179.97438 * 12 11 10 14 14 C 1.50700 * 120.00015 * 359.97438 * 12 11 10 15 15 C 1.53004 * 109.47099 * 179.97438 * 14 12 11 16 16 H 1.08997 * 110.55275 * 303.57186 * 15 14 12 17 17 C 1.54980 * 110.62019 * 180.51815 * 15 14 12 18 18 C 1.54583 * 102.12037 * 204.02574 * 17 15 14 19 19 H 1.09000 * 112.50467 * 259.36134 * 18 17 15 20 20 C 1.54176 * 109.04942 * 133.21709 * 18 17 15 21 21 N 1.48573 * 104.48251 * 223.61422 * 20 18 17 22 22 C 1.46893 * 110.99799 * 159.76101 * 21 20 18 23 23 C 1.53010 * 109.46977 * 189.99857 * 22 21 20 24 24 C 1.52993 * 117.49924 * 243.62542 * 23 22 21 25 25 C 1.52999 * 117.49866 * 175.00046 * 23 22 21 26 26 C 1.48474 * 104.20471 * 40.21333 * 21 20 18 27 27 C 1.54429 * 104.90777 * 320.83955 * 26 21 20 28 28 H 1.08996 * 112.52252 * 260.77324 * 27 26 21 29 29 O 1.43784 * 108.52329 * 136.56635 * 27 26 21 30 30 C 1.47579 * 91.01660 * 24.63594 * 11 10 9 31 31 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 32 32 H 1.09003 * 112.94354 * 48.40452 * 9 7 2 33 33 H 1.09005 * 113.76810 * 336.34098 * 10 9 7 34 34 H 1.08997 * 113.77456 * 107.74194 * 10 9 7 35 35 H 1.08990 * 109.47263 * 299.99534 * 14 12 11 36 36 H 1.09003 * 109.47534 * 60.00159 * 14 12 11 37 37 H 1.09002 * 110.86945 * 322.17662 * 17 15 14 38 38 H 1.08997 * 110.86978 * 85.86620 * 17 15 14 39 39 H 1.09004 * 110.42916 * 342.36796 * 20 18 17 40 40 H 1.08999 * 110.43402 * 104.86181 * 20 18 17 41 41 H 1.09004 * 109.47623 * 309.99551 * 22 21 20 42 42 H 1.08997 * 109.47383 * 70.00478 * 22 21 20 43 43 H 1.08995 * 115.54425 * 29.33295 * 23 22 21 44 44 H 1.09001 * 117.50347 * 359.97438 * 24 23 22 45 45 H 1.09003 * 117.49900 * 145.02613 * 24 23 22 46 46 H 1.09005 * 117.49533 * 214.98507 * 25 23 22 47 47 H 1.08998 * 117.50100 * 359.97438 * 25 23 22 48 48 H 1.09001 * 110.34931 * 201.98843 * 26 21 20 49 49 H 1.08994 * 110.35375 * 79.70416 * 26 21 20 50 50 H 1.09002 * 113.77108 * 221.05851 * 30 11 10 51 51 H 1.09000 * 113.86662 * 89.67572 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.1319 -1.0367 -1.3938 11 7 5.0924 -2.0762 -0.9752 12 6 6.3443 -2.4099 -1.3463 13 8 6.9075 -3.3412 -0.8112 14 6 7.0443 -1.6258 -2.4262 15 6 8.4418 -2.2058 -2.6531 16 1 9.0102 -2.2098 -1.7230 17 6 9.1915 -1.4097 -3.7514 18 6 10.2177 -2.4473 -4.2611 19 1 11.2131 -2.2881 -3.8464 20 6 10.2025 -2.4547 -5.8027 21 7 10.2309 -3.8946 -6.1677 22 6 9.7472 -4.0996 -7.5395 23 6 9.5543 -5.5960 -7.7940 24 6 10.4294 -6.2489 -8.8657 25 6 8.9417 -6.0117 -9.1330 26 6 9.3255 -4.5381 -5.1825 27 6 9.6104 -3.8137 -3.8488 28 1 10.2827 -4.3780 -3.2025 29 8 8.3563 -3.5375 -3.2020 30 6 4.1314 -2.6033 0.0131 31 1 -0.4850 0.8401 -0.0041 32 1 3.9362 -0.5243 0.7541 33 1 3.4727 -1.3485 -2.2040 34 1 4.5872 -0.0614 -1.5656 35 1 6.4703 -1.6881 -3.3506 36 1 7.1294 -0.5828 -2.1209 37 1 8.5105 -1.1129 -4.5491 38 1 9.6953 -0.5417 -3.3262 39 1 9.2925 -1.9852 -6.1765 40 1 11.0830 -1.9454 -6.1944 41 1 8.7962 -3.5833 -7.6705 42 1 10.4767 -3.7022 -8.2452 43 1 9.3015 -6.1930 -6.9178 44 1 11.1423 -5.6124 -9.3899 45 1 10.7525 -7.2758 -8.6948 46 1 8.2860 -6.8824 -9.1377 47 1 8.6757 -5.2191 -9.8324 48 1 9.5551 -5.6000 -5.0937 49 1 8.2851 -4.3977 -5.4756 50 1 4.5862 -2.8787 0.9646 51 1 3.4713 -3.3754 -0.3821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277243581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:07 Heat of formation + Delta-G solvation = -9.676495 kcal Electronic energy + Delta-G solvation = -28929.261161 eV Core-core repulsion = 25023.646828 eV Total energy + Delta-G solvation = -3905.614333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.77782 -39.47280 -38.30082 -37.15645 -36.19182 -32.84085 -32.62948 -31.82057 -29.82025 -28.66251 -27.40920 -25.75322 -25.20908 -24.44665 -22.74333 -22.25887 -21.47344 -20.94422 -19.88512 -19.76766 -18.23632 -17.40503 -17.15388 -16.63578 -16.40700 -16.09807 -15.48038 -15.27022 -15.07453 -14.95638 -14.48218 -14.24102 -13.84140 -13.74975 -13.38801 -13.25022 -12.86151 -12.75461 -12.59935 -12.34598 -12.07728 -11.97416 -11.84159 -11.81599 -11.60912 -11.55819 -11.33182 -11.23378 -11.08425 -10.98334 -10.90936 -10.69380 -10.59664 -10.39049 -10.06518 -9.84270 -9.68739 -9.39290 -9.05356 -8.80770 -8.70071 -7.99301 -6.21994 -4.24579 3.11449 3.17012 3.26476 3.27421 3.28704 3.44320 3.53973 3.74711 4.15799 4.28133 4.28534 4.36205 4.53680 4.57954 4.65480 4.70752 4.89088 4.95334 4.97131 5.00524 5.02567 5.08966 5.16941 5.21499 5.26956 5.29807 5.32475 5.37383 5.46118 5.53620 5.54301 5.61064 5.66418 5.73084 5.75362 5.75721 5.85990 5.87970 5.98425 6.00572 6.15604 6.18432 6.31482 6.36171 6.38585 6.58214 6.63202 6.95722 7.17368 7.53604 8.30410 8.42657 8.69190 8.81886 9.38391 10.90176 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.002199 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.235120 B =12731.866433 C =13112.415185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.087 3.913 11 N -0.644 5.644 12 C 0.527 3.473 13 O -0.549 6.549 14 C -0.131 4.131 15 C 0.099 3.901 16 H 0.078 0.922 17 C -0.148 4.148 18 C -0.122 4.122 19 H 0.099 0.901 20 C 0.040 3.960 21 N -0.507 5.507 22 C 0.076 3.924 23 C -0.154 4.154 24 C -0.173 4.173 25 C -0.181 4.181 26 C 0.032 3.968 27 C 0.074 3.926 28 H 0.087 0.913 29 O -0.354 6.354 30 C 0.118 3.882 31 H 0.266 0.734 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.064 0.936 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.923 -3.768 -15.833 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.550 4.550 8 H 0.098 0.902 9 C -0.032 4.032 10 C -0.036 4.036 11 N -0.378 5.378 12 C 0.316 3.684 13 O -0.428 6.428 14 C -0.171 4.171 15 C 0.041 3.959 16 H 0.096 0.904 17 C -0.186 4.186 18 C -0.141 4.141 19 H 0.118 0.882 20 C -0.088 4.088 21 N -0.231 5.231 22 C -0.052 4.052 23 C -0.172 4.172 24 C -0.210 4.210 25 C -0.219 4.219 26 C -0.095 4.095 27 C 0.015 3.985 28 H 0.105 0.895 29 O -0.272 6.272 30 C -0.004 4.004 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.128 0.872 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.592 -4.559 -15.588 27.823 hybrid contribution -0.378 1.424 -0.311 1.506 sum 22.214 -3.135 -15.898 27.496 Atomic orbital electron populations 1.69896 1.06322 1.27252 1.49514 1.25019 0.94682 0.99106 0.93960 0.86887 0.80549 0.83720 0.78798 1.19966 1.21196 1.18720 1.20850 0.87706 0.94865 1.51621 0.90246 1.21069 0.97066 0.92940 0.92148 1.23973 0.88035 0.89330 1.02284 1.50370 1.12246 1.34947 1.40286 1.20067 0.81085 0.84078 0.83156 1.90668 1.65830 1.30135 1.56149 1.21671 0.95524 1.00399 0.99544 1.22830 0.94897 0.82027 0.96182 0.90437 1.23356 0.97692 0.98351 0.99221 1.23201 1.00115 0.95074 0.95708 0.88235 1.23216 1.01411 0.89751 0.94382 1.65442 1.46967 1.08801 1.01938 1.21864 0.98695 0.94051 0.90576 1.22358 1.05126 0.96031 0.93728 1.22993 0.93438 1.01900 1.02711 1.22984 0.96354 1.03497 0.99048 1.23257 0.96040 0.99476 0.90751 1.23507 0.86511 0.95291 0.93144 0.89501 1.89005 1.33128 1.32052 1.73040 1.23234 0.87289 0.99077 0.90767 0.92385 0.91892 0.89618 0.92479 0.88572 0.87955 0.90159 0.89810 0.93141 0.89883 0.94062 0.90374 0.87230 0.88785 0.88865 0.88661 0.88828 0.89520 0.92232 0.91750 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.96 55.43 0.77 -24.88 16 2 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 19.69 27.19 -169.99 -4.62 15.07 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -5.66 6.25 56.52 0.35 -5.30 16 7 C -0.51 -13.24 9.32 -34.44 -0.32 -13.57 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 9 C -0.01 -0.28 2.90 -90.85 -0.26 -0.54 16 10 C 0.09 1.65 7.48 -2.97 -0.02 1.63 16 11 N -0.64 -12.49 3.61 -178.42 -0.64 -13.13 16 12 C 0.53 9.88 7.97 -10.99 -0.09 9.79 16 13 O -0.55 -12.06 16.29 -5.85 -0.10 -12.16 16 14 C -0.13 -1.82 5.23 -27.88 -0.15 -1.96 16 15 C 0.10 1.26 2.80 -25.68 -0.07 1.19 16 16 H 0.08 1.05 8.03 -51.93 -0.42 0.64 16 17 C -0.15 -1.35 6.12 -24.85 -0.15 -1.50 16 18 C -0.12 -1.09 4.08 -88.06 -0.36 -1.45 16 19 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 20 C 0.04 0.33 6.03 -2.28 -0.01 0.32 16 21 N -0.51 -4.68 5.49 -230.14 -1.26 -5.94 16 22 C 0.08 0.62 5.33 -3.82 -0.02 0.60 16 23 C -0.15 -1.23 5.62 -90.62 -0.51 -1.74 16 24 C -0.17 -1.19 10.18 -26.73 -0.27 -1.47 16 25 C -0.18 -1.26 10.25 -26.73 -0.27 -1.53 16 26 C 0.03 0.34 5.07 -2.20 -0.01 0.33 16 27 C 0.07 0.84 4.52 -24.87 -0.11 0.73 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 29 O -0.35 -5.25 10.11 -46.64 -0.47 -5.72 16 30 C 0.12 2.40 8.39 -2.98 -0.02 2.37 16 31 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 1.39 6.57 -51.93 -0.34 1.05 16 33 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 34 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 0.71 7.11 -51.93 -0.37 0.34 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.43 6.88 -51.93 -0.36 0.07 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.35 7.89 -51.93 -0.41 -0.06 16 42 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 43 H 0.11 0.95 6.24 -51.93 -0.32 0.63 16 44 H 0.09 0.59 8.03 -51.93 -0.42 0.18 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.87 7.12 -51.93 -0.37 0.50 16 49 H 0.06 0.70 7.83 -51.93 -0.41 0.29 16 50 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 51 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -30.98 399.50 -11.98 -42.95 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.92 Total: 2.67 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.76 Total: -4.87 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -1.13 Total: -43.96 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.57 Total: -17.88 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.62 Total: 15.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.98 -11.98 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277243581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.276 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds