Wall clock time and date at job start Tue Mar 31 2020 19:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.53950 * 113.74085 * 276.67910 * 9 7 2 11 11 N 1.47584 * 86.11415 * 222.04808 * 10 9 7 12 12 C 1.34774 * 134.48967 * 204.63933 * 11 10 9 13 13 O 1.21278 * 120.00066 * 179.97438 * 12 11 10 14 14 C 1.50700 * 120.00015 * 359.97438 * 12 11 10 15 15 C 1.53004 * 109.47099 * 179.97438 * 14 12 11 16 16 H 1.08997 * 110.55275 * 303.57186 * 15 14 12 17 17 C 1.54980 * 110.62019 * 180.51815 * 15 14 12 18 18 C 1.54583 * 102.12037 * 204.02574 * 17 15 14 19 19 H 1.09000 * 112.50467 * 259.36134 * 18 17 15 20 20 C 1.54176 * 109.04942 * 133.21709 * 18 17 15 21 21 N 1.48573 * 104.48251 * 223.61422 * 20 18 17 22 22 C 1.46893 * 110.99799 * 159.76101 * 21 20 18 23 23 C 1.53010 * 109.46977 * 189.99857 * 22 21 20 24 24 C 1.52993 * 117.49924 * 243.62542 * 23 22 21 25 25 C 1.52999 * 117.49866 * 175.00046 * 23 22 21 26 26 C 1.48474 * 104.20471 * 40.21333 * 21 20 18 27 27 C 1.54429 * 104.90777 * 320.83955 * 26 21 20 28 28 H 1.08996 * 112.52252 * 260.77324 * 27 26 21 29 29 O 1.43784 * 108.52329 * 136.56635 * 27 26 21 30 30 C 1.47579 * 91.01660 * 24.63594 * 11 10 9 31 31 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 32 32 H 1.09003 * 112.94354 * 48.40452 * 9 7 2 33 33 H 1.09005 * 113.76810 * 336.34098 * 10 9 7 34 34 H 1.08997 * 113.77456 * 107.74194 * 10 9 7 35 35 H 1.08990 * 109.47263 * 299.99534 * 14 12 11 36 36 H 1.09003 * 109.47534 * 60.00159 * 14 12 11 37 37 H 1.09002 * 110.86945 * 322.17662 * 17 15 14 38 38 H 1.08997 * 110.86978 * 85.86620 * 17 15 14 39 39 H 1.09004 * 110.42916 * 342.36796 * 20 18 17 40 40 H 1.08999 * 110.43402 * 104.86181 * 20 18 17 41 41 H 1.09004 * 109.47623 * 309.99551 * 22 21 20 42 42 H 1.08997 * 109.47383 * 70.00478 * 22 21 20 43 43 H 1.08995 * 115.54425 * 29.33295 * 23 22 21 44 44 H 1.09001 * 117.50347 * 359.97438 * 24 23 22 45 45 H 1.09003 * 117.49900 * 145.02613 * 24 23 22 46 46 H 1.09005 * 117.49533 * 214.98507 * 25 23 22 47 47 H 1.08998 * 117.50100 * 359.97438 * 25 23 22 48 48 H 1.09001 * 110.34931 * 201.98843 * 26 21 20 49 49 H 1.08994 * 110.35375 * 79.70416 * 26 21 20 50 50 H 1.09002 * 113.77108 * 221.05851 * 30 11 10 51 51 H 1.09000 * 113.86662 * 89.67572 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.1319 -1.0367 -1.3938 11 7 5.0924 -2.0762 -0.9752 12 6 6.3443 -2.4099 -1.3463 13 8 6.9075 -3.3412 -0.8112 14 6 7.0443 -1.6258 -2.4262 15 6 8.4418 -2.2058 -2.6531 16 1 9.0102 -2.2098 -1.7230 17 6 9.1915 -1.4097 -3.7514 18 6 10.2177 -2.4473 -4.2611 19 1 11.2131 -2.2881 -3.8464 20 6 10.2025 -2.4547 -5.8027 21 7 10.2309 -3.8946 -6.1677 22 6 9.7472 -4.0996 -7.5395 23 6 9.5543 -5.5960 -7.7940 24 6 10.4294 -6.2489 -8.8657 25 6 8.9417 -6.0117 -9.1330 26 6 9.3255 -4.5381 -5.1825 27 6 9.6104 -3.8137 -3.8488 28 1 10.2827 -4.3780 -3.2025 29 8 8.3563 -3.5375 -3.2020 30 6 4.1314 -2.6033 0.0131 31 1 -0.4850 0.8401 -0.0041 32 1 3.9362 -0.5243 0.7541 33 1 3.4727 -1.3485 -2.2040 34 1 4.5872 -0.0614 -1.5656 35 1 6.4703 -1.6881 -3.3506 36 1 7.1294 -0.5828 -2.1209 37 1 8.5105 -1.1129 -4.5491 38 1 9.6953 -0.5417 -3.3262 39 1 9.2925 -1.9852 -6.1765 40 1 11.0830 -1.9454 -6.1944 41 1 8.7962 -3.5833 -7.6705 42 1 10.4767 -3.7022 -8.2452 43 1 9.3015 -6.1930 -6.9178 44 1 11.1423 -5.6124 -9.3899 45 1 10.7525 -7.2758 -8.6948 46 1 8.2860 -6.8824 -9.1377 47 1 8.6757 -5.2191 -9.8324 48 1 9.5551 -5.6000 -5.0937 49 1 8.2851 -4.3977 -5.4756 50 1 4.5862 -2.8787 0.9646 51 1 3.4713 -3.3754 -0.3821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277243581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:05 Heat of formation + Delta-G solvation = -29.096718 kcal Electronic energy + Delta-G solvation = -28930.103285 eV Core-core repulsion = 25023.646828 eV Total energy + Delta-G solvation = -3906.456457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.66012 -40.93417 -39.13900 -38.54222 -36.99514 -34.64724 -33.74766 -32.74926 -31.29787 -29.70267 -28.25954 -27.12340 -26.84324 -25.55865 -23.28923 -23.00624 -22.42775 -21.88813 -21.28797 -20.49985 -19.72972 -19.13619 -18.25285 -17.79145 -17.38975 -17.06318 -16.72008 -16.55498 -16.02381 -15.89196 -15.71966 -15.24664 -15.07497 -14.82271 -14.70175 -14.45249 -14.09501 -13.72633 -13.56687 -13.49836 -13.42276 -13.30113 -12.94961 -12.76445 -12.69857 -12.43914 -12.37354 -12.29508 -12.15587 -11.95138 -11.81454 -11.80266 -11.68939 -11.58113 -11.29730 -11.18032 -10.97543 -10.76865 -10.65521 -10.57354 -9.59146 -9.51300 -8.26152 -6.34636 1.41999 1.46194 1.55158 1.66733 1.98499 2.39979 2.58742 2.81645 3.04878 3.06227 3.40197 3.48857 3.54570 3.76844 3.79763 3.95620 4.00018 4.04031 4.09074 4.14235 4.16699 4.26874 4.32283 4.34520 4.40939 4.44487 4.48287 4.57384 4.57974 4.60024 4.66383 4.68895 4.71824 4.76965 4.77634 4.79963 4.86629 4.91756 4.99277 5.00202 5.01710 5.05862 5.21080 5.24000 5.27304 5.40364 5.61507 5.63971 5.95191 6.08519 6.28687 6.70430 6.89659 7.19700 7.32573 8.89590 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.002199 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.235120 B =12731.866433 C =13112.415185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.017 3.983 3 Si 0.941 3.059 4 H -0.252 1.252 5 H -0.293 1.293 6 H -0.241 1.241 7 C -0.516 4.516 8 H 0.036 0.964 9 C -0.017 4.017 10 C 0.100 3.900 11 N -0.645 5.645 12 C 0.521 3.479 13 O -0.588 6.588 14 C -0.123 4.123 15 C 0.092 3.908 16 H 0.064 0.936 17 C -0.134 4.134 18 C -0.115 4.115 19 H 0.114 0.886 20 C 0.041 3.959 21 N -0.510 5.510 22 C 0.079 3.921 23 C -0.169 4.169 24 C -0.168 4.168 25 C -0.179 4.179 26 C 0.040 3.960 27 C 0.064 3.936 28 H 0.081 0.919 29 O -0.389 6.389 30 C 0.114 3.886 31 H 0.267 0.733 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.051 0.949 40 H 0.101 0.899 41 H 0.037 0.963 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.082 0.918 49 H 0.042 0.958 50 H 0.067 0.933 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.867 -1.225 -17.657 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.176 1.176 5 H -0.219 1.219 6 H -0.164 1.164 7 C -0.554 4.554 8 H 0.054 0.946 9 C -0.036 4.036 10 C -0.022 4.022 11 N -0.379 5.379 12 C 0.312 3.688 13 O -0.469 6.469 14 C -0.163 4.163 15 C 0.034 3.966 16 H 0.082 0.918 17 C -0.172 4.172 18 C -0.134 4.134 19 H 0.133 0.867 20 C -0.086 4.086 21 N -0.235 5.235 22 C -0.049 4.049 23 C -0.187 4.187 24 C -0.205 4.205 25 C -0.217 4.217 26 C -0.088 4.088 27 C 0.006 3.994 28 H 0.099 0.901 29 O -0.308 6.308 30 C -0.009 4.009 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.153 0.847 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.119 0.881 41 H 0.055 0.945 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.119 0.881 48 H 0.101 0.899 49 H 0.061 0.939 50 H 0.085 0.915 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 25.563 -2.026 -17.433 31.007 hybrid contribution -1.344 0.447 0.308 1.450 sum 24.219 -1.578 -17.125 29.704 Atomic orbital electron populations 1.70059 1.08501 1.28362 1.51609 1.25939 0.95402 1.03334 0.93490 0.85812 0.79662 0.78072 0.80088 1.17609 1.21919 1.16417 1.21003 0.90029 0.93322 1.51061 0.94603 1.20998 0.94276 0.93983 0.94380 1.23776 0.87671 0.90804 0.99936 1.50388 1.12547 1.34963 1.40048 1.21011 0.80425 0.83878 0.83456 1.90651 1.66515 1.32008 1.57694 1.21764 0.95500 1.01203 0.97797 1.22938 0.94575 0.82105 0.96999 0.91753 1.23311 0.97363 0.98500 0.98019 1.23221 1.00640 0.93310 0.96192 0.86745 1.23279 1.02315 0.89141 0.93856 1.65467 1.46384 1.09518 1.02104 1.21872 0.98775 0.94057 0.90170 1.22339 1.06551 0.96036 0.93795 1.23060 0.93535 1.02109 1.01800 1.23045 0.96575 1.03707 0.98360 1.23120 0.95310 0.99465 0.90951 1.23651 0.85673 0.97060 0.93063 0.90095 1.88975 1.34848 1.33474 1.73541 1.23123 0.87833 0.98369 0.91547 0.92358 0.91304 0.89899 0.89035 0.87436 0.84707 0.89384 0.87228 0.93035 0.88058 0.94501 0.89176 0.88576 0.87878 0.88612 0.88581 0.88054 0.89928 0.93938 0.91498 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.79 13.96 21.45 0.30 -55.49 16 2 C 0.02 0.89 5.47 84.66 0.46 1.35 16 3 Si 0.94 39.21 27.19 68.60 1.87 41.08 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.24 -9.12 6.25 99.48 0.62 -8.50 16 7 C -0.52 -27.21 9.32 25.60 0.24 -26.97 16 8 H 0.04 2.13 8.06 -2.91 -0.02 2.11 16 9 C -0.02 -0.72 2.90 -10.88 -0.03 -0.75 16 10 C 0.10 3.58 7.48 86.48 0.65 4.22 16 11 N -0.65 -24.06 3.61 -836.80 -3.02 -27.08 16 12 C 0.52 18.79 7.97 87.66 0.70 19.49 16 13 O -0.59 -25.82 16.29 7.89 0.13 -25.69 16 14 C -0.12 -3.04 5.23 29.85 0.16 -2.89 16 15 C 0.09 2.16 2.80 31.27 0.09 2.25 16 16 H 0.06 1.66 8.03 -2.39 -0.02 1.64 16 17 C -0.13 -1.96 6.12 31.81 0.19 -1.77 16 18 C -0.11 -1.75 4.08 -9.13 -0.04 -1.78 16 19 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 20 C 0.04 0.57 6.03 86.38 0.52 1.09 16 21 N -0.51 -8.62 5.49 -882.02 -4.84 -13.46 16 22 C 0.08 1.17 5.33 86.31 0.46 1.63 16 23 C -0.17 -2.57 5.62 -10.79 -0.06 -2.63 16 24 C -0.17 -2.08 10.18 30.59 0.31 -1.77 16 25 C -0.18 -2.29 10.25 30.59 0.31 -1.98 16 26 C 0.04 0.82 5.07 86.48 0.44 1.26 16 27 C 0.06 1.41 4.52 31.80 0.14 1.55 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 O -0.39 -11.39 10.11 -138.07 -1.40 -12.79 16 30 C 0.11 4.65 8.39 86.48 0.73 5.37 16 31 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.07 2.87 6.57 -2.39 -0.02 2.86 16 33 H 0.08 3.02 8.09 -2.38 -0.02 3.00 16 34 H 0.09 2.68 8.09 -2.39 -0.02 2.66 16 35 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.09 1.19 7.11 -2.39 -0.02 1.17 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.05 0.71 6.88 -2.38 -0.02 0.70 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.04 0.58 7.89 -2.39 -0.02 0.56 16 42 H 0.09 1.12 7.87 -2.39 -0.02 1.10 16 43 H 0.10 1.71 6.24 -2.39 -0.01 1.69 16 44 H 0.10 1.09 8.03 -2.39 -0.02 1.07 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.08 1.71 7.12 -2.39 -0.02 1.70 16 49 H 0.04 1.01 7.83 -2.39 -0.02 0.99 16 50 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 51 H 0.07 2.93 8.09 -2.39 -0.02 2.91 16 Total: -1.00 -69.74 399.50 -0.88 -70.61 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.81 Total: 25.14 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.27 Total: -2.32 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -7.56 Total: -96.03 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.27 Total: -38.48 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.87 Total: 41.08 kcal Total: -69.74 -0.88 -70.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277243581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.515 kcal (2) G-P(sol) polarization free energy of solvation -69.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds