Wall clock time and date at job start Tue Mar 31 2020 19:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48500 * 109.47552 * 240.00014 * 3 2 1 5 5 H 1.48497 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47153 * 120.00031 * 3 2 1 7 7 C 1.37876 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00484 * 179.72707 * 7 2 1 9 9 C 1.50699 * 119.99820 * 359.97438 * 7 2 1 10 10 C 1.53954 * 113.74407 * 276.40140 * 9 7 2 11 11 N 1.47577 * 86.11625 * 222.04663 * 10 9 7 12 12 C 1.34773 * 134.49036 * 204.63458 * 11 10 9 13 13 O 1.21286 * 120.00263 * 354.33854 * 12 11 10 14 14 C 1.50699 * 120.00430 * 174.33613 * 12 11 10 15 15 H 1.09003 * 109.56847 * 20.07456 * 14 12 11 16 16 C 1.53287 * 109.57565 * 140.31972 * 14 12 11 17 17 O 1.42902 * 109.30421 * 64.62341 * 16 14 12 18 18 C 1.42889 * 114.39436 * 63.03934 * 17 16 14 19 19 C 1.53293 * 109.31773 * 296.97034 * 18 17 16 20 20 C 1.52750 * 109.57220 * 259.83863 * 14 12 11 21 21 C 1.53411 * 113.68239 * 161.92076 * 20 14 12 22 22 N 1.48059 * 86.01542 * 221.94438 * 21 20 14 23 23 C 1.46902 * 110.99776 * 137.22697 * 22 21 20 24 24 C 1.52993 * 109.46915 * 70.54386 * 23 22 21 25 25 C 1.52999 * 117.49935 * 243.61680 * 24 23 22 26 26 C 1.52999 * 60.00325 * 252.51169 * 25 24 23 27 27 C 1.48072 * 90.84714 * 24.30021 * 22 21 20 28 28 C 1.47576 * 91.01959 * 24.63929 * 11 10 9 29 29 H 0.97001 * 120.00676 * 359.97438 * 1 2 3 30 30 H 1.09000 * 112.94794 * 48.12939 * 9 7 2 31 31 H 1.09001 * 113.76717 * 336.34765 * 10 9 7 32 32 H 1.09000 * 113.77056 * 107.74244 * 10 9 7 33 33 H 1.09002 * 109.50276 * 184.57065 * 16 14 12 34 34 H 1.09002 * 109.49812 * 304.67709 * 16 14 12 35 35 H 1.09004 * 109.49713 * 56.92582 * 18 17 16 36 36 H 1.09005 * 109.49532 * 177.01812 * 18 17 16 37 37 H 1.08998 * 109.56473 * 174.99516 * 19 18 17 38 38 H 1.09006 * 109.56845 * 295.23582 * 19 18 17 39 39 H 1.08993 * 113.78836 * 336.21918 * 21 20 14 40 40 H 1.09001 * 113.78641 * 107.67501 * 21 20 14 41 41 H 1.09000 * 109.46732 * 190.54450 * 23 22 21 42 42 H 1.09000 * 109.47473 * 310.53994 * 23 22 21 43 43 H 1.08999 * 115.55598 * 29.32783 * 24 23 22 44 44 H 1.09003 * 117.49794 * 0.02562 * 25 24 23 45 45 H 1.09000 * 117.50092 * 145.01891 * 25 24 23 46 46 H 1.08999 * 117.49657 * 252.50939 * 26 25 24 47 47 H 1.08998 * 117.51376 * 107.47838 * 26 25 24 48 48 H 1.08995 * 113.77861 * 221.41355 * 27 22 21 49 49 H 1.08997 * 113.78107 * 89.97372 * 27 22 21 50 50 H 1.08997 * 113.77413 * 221.05809 * 28 11 10 51 51 H 1.09001 * 113.77329 * 89.65820 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0050 9 6 1.2511 -2.4991 -0.0005 10 6 0.8056 -2.9577 1.4000 11 7 1.2252 -4.3091 0.9810 12 6 0.8886 -5.5602 1.3524 13 8 0.1390 -5.7335 2.2900 14 6 1.4435 -6.7439 0.6028 15 1 2.3373 -6.4434 0.0561 16 6 1.7979 -7.8589 1.5932 17 8 0.6044 -8.3266 2.2249 18 6 -0.3409 -8.9214 1.3336 19 6 -0.8210 -7.8692 0.3276 20 6 0.3951 -7.2655 -0.3781 21 6 0.9748 -8.1598 -1.4816 22 7 0.0693 -7.4349 -2.4018 23 6 0.7528 -7.1011 -3.6585 24 6 0.9861 -8.3788 -4.4670 25 6 2.4350 -8.7943 -4.7292 26 6 1.5834 -8.2293 -5.8677 27 6 0.0386 -6.2696 -1.4887 28 6 2.1615 -3.7405 -0.0079 29 1 -0.4851 0.8400 0.0004 30 1 0.4581 -2.5320 -0.7477 31 1 1.4058 -2.5426 2.2097 32 1 -0.2666 -2.8643 1.5725 33 1 2.2736 -8.6818 1.0597 34 1 2.4812 -7.4708 2.3485 35 1 0.1314 -9.7462 0.7999 36 1 -1.1919 -9.2956 1.9027 37 1 -1.4737 -8.3388 -0.4083 38 1 -1.3670 -7.0849 0.8521 39 1 2.0326 -7.9857 -1.6782 40 1 0.7303 -9.2157 -1.3656 41 1 0.1354 -6.4131 -4.2362 42 1 1.7110 -6.6310 -3.4373 43 1 0.2546 -9.1722 -4.3140 44 1 3.2221 -8.1575 -4.3252 45 1 2.6571 -9.8612 -4.7483 46 1 1.2451 -8.9246 -6.6360 47 1 1.8098 -7.2206 -6.2132 48 1 -0.9498 -5.8235 -1.3785 49 1 0.8188 -5.5349 -1.6874 50 1 2.1719 -4.2721 -0.9594 51 1 3.1600 -3.5554 0.3882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277243885.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:58 Heat of formation + Delta-G solvation = 14.820429 kcal Electronic energy + Delta-G solvation = -30694.078491 eV Core-core repulsion = 26789.526424 eV Total energy + Delta-G solvation = -3904.552067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.36930 -39.14629 -38.23774 -37.09005 -36.56804 -32.77317 -32.54924 -31.42298 -29.03685 -28.32603 -26.49023 -25.39308 -25.11520 -24.24466 -23.57590 -22.60251 -21.95212 -20.67899 -20.16836 -18.84321 -17.71222 -16.91188 -16.70771 -16.37469 -15.99987 -15.74586 -15.51222 -15.39220 -14.77593 -14.65243 -14.49946 -14.35221 -14.03093 -13.76662 -13.45218 -12.93848 -12.76153 -12.46778 -12.30939 -12.16167 -12.04614 -11.78160 -11.70303 -11.60310 -11.40270 -11.26214 -11.20056 -10.96087 -10.85705 -10.77420 -10.65298 -10.55567 -10.38584 -10.23499 -10.10086 -9.70344 -9.35182 -9.23393 -8.86355 -8.74119 -8.57545 -7.79215 -6.18404 -4.24973 3.19130 3.23776 3.30063 3.31099 3.52498 3.54072 3.77396 4.00450 4.27300 4.32897 4.47681 4.54125 4.69169 4.73019 4.87416 4.95080 4.98459 5.04860 5.12447 5.19373 5.26046 5.27652 5.34466 5.39332 5.40527 5.46677 5.51380 5.52954 5.57597 5.65337 5.70172 5.80695 5.84121 5.86756 5.94188 6.03521 6.08846 6.09644 6.16782 6.21248 6.23927 6.35288 6.46537 6.56237 6.79891 6.89930 6.95575 7.35109 7.51468 7.77883 8.14692 8.57122 8.77637 8.87476 9.41979 10.90975 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.003809 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.521321 B = 7349.468032 C = 9418.433911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.037 3.963 10 C 0.114 3.886 11 N -0.641 5.641 12 C 0.532 3.468 13 O -0.537 6.537 14 C -0.128 4.128 15 H 0.089 0.911 16 C 0.085 3.915 17 O -0.360 6.360 18 C 0.066 3.934 19 C -0.125 4.125 20 C -0.070 4.070 21 C 0.016 3.984 22 N -0.473 5.473 23 C 0.050 3.950 24 C -0.144 4.144 25 C -0.184 4.184 26 C -0.179 4.179 27 C 0.014 3.986 28 C 0.093 3.907 29 H 0.265 0.735 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.054 0.946 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -18.158 -7.053 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.018 3.982 10 C -0.008 4.008 11 N -0.376 5.376 12 C 0.320 3.680 13 O -0.414 6.414 14 C -0.151 4.151 15 H 0.107 0.893 16 C 0.007 3.993 17 O -0.277 6.277 18 C -0.011 4.011 19 C -0.163 4.163 20 C -0.071 4.071 21 C -0.112 4.112 22 N -0.195 5.195 23 C -0.078 4.078 24 C -0.162 4.162 25 C -0.221 4.221 26 C -0.216 4.216 27 C -0.115 4.115 28 C -0.029 4.029 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.128 0.872 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.096 0.904 50 H 0.073 0.927 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.385 -18.600 -6.531 19.856 hybrid contribution 1.448 1.429 -0.313 2.058 sum 3.832 -17.170 -6.843 18.877 Atomic orbital electron populations 1.69937 1.06056 1.27272 1.48774 1.25013 0.94832 0.99347 0.94259 0.86625 0.79625 0.82830 0.78758 1.20106 1.21203 1.20079 1.20913 0.92891 0.89807 1.52520 0.92034 1.20472 0.94027 0.91072 0.92648 1.23598 0.99531 0.76463 1.01189 1.50496 1.42359 1.04730 1.39987 1.19817 0.82066 0.82531 0.83628 1.90685 1.37379 1.84794 1.28571 1.21922 0.99328 0.95859 0.97953 0.89272 1.22327 0.87734 0.93876 0.95378 1.88021 1.28368 1.78105 1.33226 1.22531 0.92645 0.93785 0.92092 1.21938 0.96203 0.99935 0.98228 1.21826 0.95767 0.96606 0.92901 1.23951 0.96075 0.99533 0.91684 1.68532 1.37570 1.12454 1.00912 1.22227 0.97738 0.95469 0.92386 1.22223 0.96379 0.99892 0.97704 1.23051 0.94112 1.01358 1.03551 1.22941 1.04454 1.02551 0.91661 1.24027 1.03269 0.93270 0.90890 1.23559 0.94777 0.94690 0.89904 0.92535 0.91852 0.91201 0.92062 0.92807 0.88995 0.93803 0.89035 0.90094 0.89893 0.91193 0.89419 0.90078 0.93884 0.87209 0.88966 0.88990 0.88832 0.88747 0.88944 0.90400 0.92720 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.20 13.27 55.43 0.74 -23.46 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.52 -13.07 8.77 -34.44 -0.30 -13.37 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.04 0.84 3.62 -90.84 -0.33 0.51 16 10 C 0.11 2.56 8.39 -2.97 -0.02 2.54 16 11 N -0.64 -12.58 3.61 -178.42 -0.64 -13.22 16 12 C 0.53 10.04 6.34 -10.99 -0.07 9.97 16 13 O -0.54 -12.07 15.19 -13.62 -0.21 -12.28 16 14 C -0.13 -1.82 2.14 -91.75 -0.20 -2.01 16 15 H 0.09 1.14 7.45 -51.93 -0.39 0.76 16 16 C 0.08 1.12 6.08 37.31 0.23 1.34 16 17 O -0.36 -5.54 9.41 -54.41 -0.51 -6.05 16 18 C 0.07 0.82 6.79 37.31 0.25 1.07 16 19 C -0.13 -1.66 4.85 -26.57 -0.13 -1.79 16 20 C -0.07 -0.89 0.36 -154.29 -0.06 -0.95 16 21 C 0.02 0.17 6.46 -2.98 -0.02 0.15 16 22 N -0.47 -5.51 6.13 -240.63 -1.48 -6.99 16 23 C 0.05 0.53 5.10 -3.83 -0.02 0.51 16 24 C -0.14 -1.31 5.47 -90.62 -0.50 -1.81 16 25 C -0.18 -1.48 10.18 -26.73 -0.27 -1.75 16 26 C -0.18 -1.45 10.25 -26.73 -0.27 -1.72 16 27 C 0.01 0.19 6.73 -2.99 -0.02 0.17 16 28 C 0.09 1.71 7.75 -2.97 -0.02 1.68 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.06 1.57 8.12 -51.93 -0.42 1.15 16 31 H 0.07 1.60 8.09 -51.93 -0.42 1.18 16 32 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.04 0.44 7.80 -51.93 -0.40 0.04 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 38 H 0.08 1.36 7.22 -51.93 -0.37 0.99 16 39 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 40 H 0.09 0.85 7.74 -51.93 -0.40 0.45 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.04 0.46 7.43 -51.93 -0.39 0.08 16 43 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 0.75 8.03 -51.93 -0.42 0.33 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 1.40 8.09 -51.93 -0.42 0.98 16 49 H 0.08 1.10 6.18 -51.93 -0.32 0.78 16 50 H 0.05 0.87 6.60 -51.93 -0.34 0.53 16 51 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -29.12 399.15 -11.84 -40.96 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.88 Total: 3.80 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.85 Total: -3.75 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -1.38 Total: -43.67 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.72 Total: -18.33 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.12 -11.84 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277243885.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.776 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds