Wall clock time and date at job start Tue Mar 31 2020 19:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48500 * 109.47552 * 240.00014 * 3 2 1 5 5 H 1.48497 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47153 * 120.00031 * 3 2 1 7 7 C 1.37876 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00484 * 179.72707 * 7 2 1 9 9 C 1.50699 * 119.99820 * 359.97438 * 7 2 1 10 10 C 1.53954 * 113.74407 * 276.40140 * 9 7 2 11 11 N 1.47577 * 86.11625 * 222.04663 * 10 9 7 12 12 C 1.34773 * 134.49036 * 204.63458 * 11 10 9 13 13 O 1.21286 * 120.00263 * 354.33854 * 12 11 10 14 14 C 1.50699 * 120.00430 * 174.33613 * 12 11 10 15 15 H 1.09003 * 109.56847 * 20.07456 * 14 12 11 16 16 C 1.53287 * 109.57565 * 140.31972 * 14 12 11 17 17 O 1.42902 * 109.30421 * 64.62341 * 16 14 12 18 18 C 1.42889 * 114.39436 * 63.03934 * 17 16 14 19 19 C 1.53293 * 109.31773 * 296.97034 * 18 17 16 20 20 C 1.52750 * 109.57220 * 259.83863 * 14 12 11 21 21 C 1.53411 * 113.68239 * 161.92076 * 20 14 12 22 22 N 1.48059 * 86.01542 * 221.94438 * 21 20 14 23 23 C 1.46902 * 110.99776 * 137.22697 * 22 21 20 24 24 C 1.52993 * 109.46915 * 70.54386 * 23 22 21 25 25 C 1.52999 * 117.49935 * 243.61680 * 24 23 22 26 26 C 1.52999 * 60.00325 * 252.51169 * 25 24 23 27 27 C 1.48072 * 90.84714 * 24.30021 * 22 21 20 28 28 C 1.47576 * 91.01959 * 24.63929 * 11 10 9 29 29 H 0.97001 * 120.00676 * 359.97438 * 1 2 3 30 30 H 1.09000 * 112.94794 * 48.12939 * 9 7 2 31 31 H 1.09001 * 113.76717 * 336.34765 * 10 9 7 32 32 H 1.09000 * 113.77056 * 107.74244 * 10 9 7 33 33 H 1.09002 * 109.50276 * 184.57065 * 16 14 12 34 34 H 1.09002 * 109.49812 * 304.67709 * 16 14 12 35 35 H 1.09004 * 109.49713 * 56.92582 * 18 17 16 36 36 H 1.09005 * 109.49532 * 177.01812 * 18 17 16 37 37 H 1.08998 * 109.56473 * 174.99516 * 19 18 17 38 38 H 1.09006 * 109.56845 * 295.23582 * 19 18 17 39 39 H 1.08993 * 113.78836 * 336.21918 * 21 20 14 40 40 H 1.09001 * 113.78641 * 107.67501 * 21 20 14 41 41 H 1.09000 * 109.46732 * 190.54450 * 23 22 21 42 42 H 1.09000 * 109.47473 * 310.53994 * 23 22 21 43 43 H 1.08999 * 115.55598 * 29.32783 * 24 23 22 44 44 H 1.09003 * 117.49794 * 0.02562 * 25 24 23 45 45 H 1.09000 * 117.50092 * 145.01891 * 25 24 23 46 46 H 1.08999 * 117.49657 * 252.50939 * 26 25 24 47 47 H 1.08998 * 117.51376 * 107.47838 * 26 25 24 48 48 H 1.08995 * 113.77861 * 221.41355 * 27 22 21 49 49 H 1.08997 * 113.78107 * 89.97372 * 27 22 21 50 50 H 1.08997 * 113.77413 * 221.05809 * 28 11 10 51 51 H 1.09001 * 113.77329 * 89.65820 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0050 9 6 1.2511 -2.4991 -0.0005 10 6 0.8056 -2.9577 1.4000 11 7 1.2252 -4.3091 0.9810 12 6 0.8886 -5.5602 1.3524 13 8 0.1390 -5.7335 2.2900 14 6 1.4435 -6.7439 0.6028 15 1 2.3373 -6.4434 0.0561 16 6 1.7979 -7.8589 1.5932 17 8 0.6044 -8.3266 2.2249 18 6 -0.3409 -8.9214 1.3336 19 6 -0.8210 -7.8692 0.3276 20 6 0.3951 -7.2655 -0.3781 21 6 0.9748 -8.1598 -1.4816 22 7 0.0693 -7.4349 -2.4018 23 6 0.7528 -7.1011 -3.6585 24 6 0.9861 -8.3788 -4.4670 25 6 2.4350 -8.7943 -4.7292 26 6 1.5834 -8.2293 -5.8677 27 6 0.0386 -6.2696 -1.4887 28 6 2.1615 -3.7405 -0.0079 29 1 -0.4851 0.8400 0.0004 30 1 0.4581 -2.5320 -0.7477 31 1 1.4058 -2.5426 2.2097 32 1 -0.2666 -2.8643 1.5725 33 1 2.2736 -8.6818 1.0597 34 1 2.4812 -7.4708 2.3485 35 1 0.1314 -9.7462 0.7999 36 1 -1.1919 -9.2956 1.9027 37 1 -1.4737 -8.3388 -0.4083 38 1 -1.3670 -7.0849 0.8521 39 1 2.0326 -7.9857 -1.6782 40 1 0.7303 -9.2157 -1.3656 41 1 0.1354 -6.4131 -4.2362 42 1 1.7110 -6.6310 -3.4373 43 1 0.2546 -9.1722 -4.3140 44 1 3.2221 -8.1575 -4.3252 45 1 2.6571 -9.8612 -4.7483 46 1 1.2451 -8.9246 -6.6360 47 1 1.8098 -7.2206 -6.2132 48 1 -0.9498 -5.8235 -1.3785 49 1 0.8188 -5.5349 -1.6874 50 1 2.1719 -4.2721 -0.9594 51 1 3.1600 -3.5554 0.3882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277243885.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:57 Heat of formation + Delta-G solvation = -2.877548 kcal Electronic energy + Delta-G solvation = -30694.845933 eV Core-core repulsion = 26789.526424 eV Total energy + Delta-G solvation = -3905.319508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.45528 -40.60090 -39.37696 -38.16650 -37.79498 -34.64663 -33.69412 -32.52363 -30.66783 -29.30157 -27.60904 -26.97753 -26.82243 -25.22595 -24.70424 -23.20693 -23.08453 -21.90204 -21.26701 -20.16732 -19.11546 -18.62142 -17.94579 -17.64160 -17.11331 -16.83360 -16.56132 -16.49773 -16.36114 -15.86252 -15.76860 -15.55962 -15.12542 -14.82736 -14.59170 -14.12573 -14.07011 -13.90393 -13.77918 -13.34814 -13.20835 -13.12955 -12.98017 -12.87982 -12.68949 -12.56165 -12.37841 -12.27463 -12.19131 -12.08974 -11.85760 -11.66383 -11.47352 -11.35258 -11.11759 -11.07758 -10.82351 -10.59422 -10.50279 -10.19487 -9.77323 -9.46131 -8.16874 -6.29089 1.46599 1.47555 1.54930 1.71823 2.02167 2.44543 2.75909 2.96691 3.01395 3.13794 3.20103 3.51535 3.62572 3.78173 3.89014 3.92401 4.01116 4.06470 4.16284 4.20173 4.28486 4.35181 4.36661 4.43575 4.46991 4.48624 4.52904 4.57999 4.59105 4.64976 4.71290 4.74464 4.76839 4.79719 4.82264 4.82781 4.90820 4.99357 5.05740 5.05934 5.10631 5.14381 5.28486 5.29478 5.32573 5.35862 5.58010 5.80752 6.05920 6.21624 6.38248 6.80944 7.00435 7.31434 7.41887 8.92625 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.003809 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.521321 B = 7349.468032 C = 9418.433911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.072 0.928 9 C 0.027 3.973 10 C 0.113 3.887 11 N -0.641 5.641 12 C 0.526 3.474 13 O -0.579 6.579 14 C -0.119 4.119 15 H 0.112 0.888 16 C 0.081 3.919 17 O -0.391 6.391 18 C 0.065 3.935 19 C -0.121 4.121 20 C -0.070 4.070 21 C 0.034 3.966 22 N -0.476 5.476 23 C 0.052 3.948 24 C -0.150 4.150 25 C -0.173 4.173 26 C -0.180 4.180 27 C 0.009 3.991 28 C 0.115 3.885 29 H 0.262 0.738 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.038 0.962 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.085 0.915 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 -20.509 -8.554 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.090 0.910 9 C 0.008 3.992 10 C -0.010 4.010 11 N -0.376 5.376 12 C 0.317 3.683 13 O -0.459 6.459 14 C -0.141 4.141 15 H 0.130 0.870 16 C 0.004 3.996 17 O -0.310 6.310 18 C -0.011 4.011 19 C -0.159 4.159 20 C -0.071 4.071 21 C -0.094 4.094 22 N -0.198 5.198 23 C -0.077 4.077 24 C -0.169 4.169 25 C -0.210 4.210 26 C -0.217 4.217 27 C -0.120 4.120 28 C -0.006 4.006 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.110 0.890 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.297 -20.971 -8.053 23.080 hybrid contribution 0.471 2.156 0.156 2.212 sum 5.768 -18.815 -7.897 21.205 Atomic orbital electron populations 1.70082 1.07704 1.27789 1.50567 1.25821 0.95458 1.02833 0.94183 0.85620 0.78291 0.78652 0.79167 1.18924 1.21739 1.19487 1.21323 0.93536 0.90644 1.51204 0.90958 1.20362 0.94436 0.92673 0.91722 1.23315 0.97505 0.79127 1.01067 1.50488 1.42666 1.04240 1.40166 1.20787 0.81100 0.83154 0.83266 1.90664 1.39153 1.85378 1.30679 1.21983 1.00128 0.93819 0.98123 0.86973 1.22518 0.87222 0.94570 0.95289 1.87984 1.29505 1.78540 1.34949 1.22680 0.92720 0.93934 0.91757 1.21863 0.96376 0.99144 0.98500 1.21843 0.95444 0.97079 0.92726 1.23968 0.96675 0.99802 0.88989 1.68516 1.38654 1.11343 1.01263 1.22211 0.97366 0.96240 0.91871 1.22098 0.97369 0.99053 0.98360 1.23114 0.93149 1.02122 1.02643 1.23014 1.04282 1.02812 0.91598 1.23913 1.01491 0.93950 0.92614 1.23442 0.94135 0.92072 0.90975 0.92871 0.94791 0.91798 0.95191 0.88587 0.89469 0.90357 0.88704 0.88922 0.94308 0.89384 0.87473 0.91388 0.93610 0.87471 0.88729 0.87777 0.87913 0.88976 0.91864 0.90961 0.89660 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.37 13.27 21.45 0.28 -52.09 16 2 C 0.02 0.89 5.46 84.66 0.46 1.35 16 3 Si 0.96 41.14 29.54 68.60 2.03 43.17 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.53 -26.50 8.77 25.60 0.22 -26.27 16 8 H 0.07 3.40 7.81 -2.91 -0.02 3.37 16 9 C 0.03 1.27 3.62 -10.88 -0.04 1.23 16 10 C 0.11 5.33 8.39 86.48 0.73 6.06 16 11 N -0.64 -25.45 3.61 -836.79 -3.02 -28.47 16 12 C 0.53 20.02 6.34 87.66 0.56 20.58 16 13 O -0.58 -27.00 15.19 15.29 0.23 -26.77 16 14 C -0.12 -3.11 2.14 -11.53 -0.02 -3.14 16 15 H 0.11 2.43 7.45 -2.39 -0.02 2.41 16 16 C 0.08 1.91 6.08 72.08 0.44 2.35 16 17 O -0.39 -11.47 9.41 -130.65 -1.23 -12.70 16 18 C 0.07 1.48 6.79 72.08 0.49 1.97 16 19 C -0.12 -3.14 4.85 30.70 0.15 -2.99 16 20 C -0.07 -1.66 0.36 -51.97 -0.02 -1.68 16 21 C 0.03 0.58 6.46 86.21 0.56 1.14 16 22 N -0.48 -10.20 6.13 -915.23 -5.61 -15.81 16 23 C 0.05 0.99 5.10 86.30 0.44 1.43 16 24 C -0.15 -2.34 5.47 -10.79 -0.06 -2.40 16 25 C -0.17 -2.18 10.18 30.59 0.31 -1.86 16 26 C -0.18 -2.46 10.25 30.60 0.31 -2.14 16 27 C 0.01 0.24 6.73 86.20 0.58 0.82 16 28 C 0.12 4.07 7.75 86.48 0.67 4.74 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.03 1.77 8.12 -2.39 -0.02 1.75 16 31 H 0.06 3.05 8.09 -2.39 -0.02 3.03 16 32 H 0.03 1.55 8.14 -2.39 -0.02 1.54 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 1.25 7.80 -2.39 -0.02 1.23 16 36 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.09 2.13 8.03 -2.39 -0.02 2.11 16 38 H 0.04 1.34 7.22 -2.38 -0.02 1.32 16 39 H 0.09 1.26 7.66 -2.39 -0.02 1.24 16 40 H 0.11 1.51 7.74 -2.39 -0.02 1.49 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 0.86 7.43 -2.39 -0.02 0.84 16 43 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.09 1.17 8.03 -2.39 -0.02 1.15 16 45 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 49 H 0.07 1.99 6.18 -2.39 -0.01 1.97 16 50 H 0.09 2.51 6.60 -2.39 -0.02 2.49 16 51 H 0.09 2.96 8.09 -2.39 -0.02 2.94 16 Total: -1.00 -66.71 399.15 -0.64 -67.35 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.90 Total: 24.12 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 5.78 Total: 1.20 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -8.34 Total: -96.36 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.00 Total: -39.46 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -66.71 -0.64 -67.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277243885.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.471 kcal (2) G-P(sol) polarization free energy of solvation -66.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds