Wall clock time and date at job start Tue Mar 31 2020 18:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 119.99792 * 2 1 4 4 H 1.08003 * 120.00075 * 202.70387 * 3 2 1 5 5 C 1.38817 * 120.00208 * 22.70170 * 3 2 1 6 6 N 1.31623 * 119.99659 * 11.50893 * 5 3 2 7 7 Si 1.86792 * 120.00000 * 191.50903 * 5 3 2 8 8 H 1.48491 * 109.47370 * 90.00108 * 7 5 3 9 9 H 1.48501 * 109.46898 * 210.00108 * 7 5 3 10 10 H 1.48503 * 109.47257 * 329.99794 * 7 5 3 11 11 C 1.46495 * 120.00321 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47299 * 270.00566 * 11 2 1 13 13 O 1.42899 * 109.47327 * 64.99854 * 12 11 2 14 14 C 1.42896 * 114.00234 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47085 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47217 * 65.00180 * 15 14 13 17 17 C 1.34781 * 119.99794 * 180.02562 * 16 15 14 18 18 O 1.21280 * 119.99983 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99650 * 179.72118 * 17 16 15 20 20 H 1.09004 * 109.46953 * 60.27296 * 19 17 16 21 21 C 1.52995 * 109.46989 * 180.27496 * 19 17 16 22 22 C 1.53001 * 109.47239 * 180.02562 * 21 19 17 23 23 C 1.52999 * 109.46879 * 299.99560 * 22 21 19 24 24 C 1.53008 * 109.46892 * 60.00326 * 23 22 21 25 25 C 1.52999 * 109.47322 * 300.27174 * 19 17 16 26 26 F 1.39889 * 109.47352 * 300.00235 * 25 19 17 27 27 F 1.39905 * 109.46921 * 60.00527 * 25 19 17 28 28 H 1.08994 * 109.47666 * 273.92088 * 1 2 3 29 29 H 1.09007 * 109.47019 * 33.92747 * 1 2 3 30 30 H 1.09000 * 109.47104 * 153.91837 * 1 2 3 31 31 H 0.97001 * 119.99720 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47266 * 150.00270 * 11 2 1 33 33 H 1.09004 * 109.47035 * 30.00630 * 11 2 1 34 34 H 1.08999 * 109.47001 * 304.99600 * 12 11 2 35 35 H 1.09003 * 109.47116 * 184.99631 * 12 11 2 36 36 H 1.09000 * 109.47104 * 60.00536 * 14 13 12 37 37 H 1.08999 * 109.47018 * 299.99906 * 14 13 12 38 38 H 1.09000 * 109.46823 * 304.99813 * 15 14 13 39 39 H 1.09000 * 109.46855 * 185.00270 * 15 14 13 40 40 H 0.96995 * 120.00193 * 359.97438 * 16 15 14 41 41 H 1.09007 * 109.47023 * 300.00267 * 21 19 17 42 42 H 1.08996 * 109.47608 * 59.99844 * 21 19 17 43 43 H 1.08998 * 109.47314 * 60.00204 * 22 21 19 44 44 H 1.09005 * 109.47003 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.47340 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.47673 * 300.00424 * 23 22 21 47 47 H 1.08998 * 109.46881 * 59.99613 * 24 23 22 48 48 H 1.09001 * 109.46931 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1669 1.2223 -0.3610 5 6 1.5362 2.3416 0.4640 6 7 0.3915 2.2654 1.1093 7 14 2.3352 4.0046 0.1725 8 1 1.8559 4.5650 -1.1164 9 1 1.9743 4.9278 1.2783 10 1 3.8106 3.8433 0.1239 11 6 2.1975 -1.2686 0.0006 12 6 2.4524 -1.7098 1.4432 13 8 1.2059 -1.9927 2.0822 14 6 1.3323 -2.4162 3.4411 15 6 -0.0568 -2.6902 4.0211 16 7 -0.6652 -3.8220 3.3176 17 6 -1.8979 -4.2452 3.6611 18 8 -2.5031 -3.6893 4.5531 19 6 -2.5263 -5.4054 2.9331 20 1 -1.9037 -6.2917 3.0561 21 6 -3.9177 -5.6755 3.5090 22 6 -4.5555 -6.8539 2.7703 23 6 -4.6758 -6.5182 1.2825 24 6 -3.2842 -6.2481 0.7065 25 6 -2.6466 -5.0692 1.4454 26 9 -3.4455 -3.9318 1.2874 27 9 -1.3742 -4.8223 0.9187 28 1 -0.3634 0.0703 1.0252 29 1 -0.3633 0.8528 -0.5736 30 1 -0.3633 -0.9230 -0.4518 31 1 -0.0373 3.0729 1.4331 32 1 3.1499 -1.1385 -0.5133 33 1 1.6085 -2.0285 -0.5130 34 1 2.9641 -0.9123 1.9820 35 1 3.0732 -2.6058 1.4449 36 1 1.8208 -1.6336 4.0216 37 1 1.9296 -3.3269 3.4838 38 1 -0.6828 -1.8065 3.8977 39 1 0.0325 -2.9270 5.0814 40 1 -0.1813 -4.2663 2.6040 41 1 -3.8320 -5.9150 4.5690 42 1 -4.5402 -4.7893 3.3860 43 1 -3.9330 -7.7400 2.8938 44 1 -5.5467 -7.0466 3.1810 45 1 -5.1297 -7.3578 0.7561 46 1 -5.2983 -5.6321 1.1590 47 1 -2.6617 -7.1343 0.8300 48 1 -3.3699 -6.0085 -0.3534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277507380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:29 Heat of formation + Delta-G solvation = -173.447846 kcal Electronic energy + Delta-G solvation = -30929.618991 eV Core-core repulsion = 26462.673470 eV Total energy + Delta-G solvation = -4466.945521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.13472 -47.08548 -39.92162 -37.82423 -37.31174 -35.37602 -34.37558 -31.89648 -31.35863 -30.47497 -29.25606 -27.71298 -25.63815 -24.30434 -23.05422 -22.94499 -22.14183 -20.79510 -20.28715 -20.16995 -17.84413 -17.37972 -16.86774 -16.79705 -16.34412 -16.21123 -15.97492 -15.19515 -14.81150 -14.62144 -14.41512 -14.32572 -14.17114 -13.81587 -13.53510 -13.40197 -13.34939 -13.31125 -13.02489 -12.92944 -12.57982 -12.29676 -12.09049 -11.98358 -11.67840 -11.49573 -11.33672 -11.20596 -11.05671 -10.85410 -10.79145 -10.72574 -10.61291 -10.45119 -9.99192 -9.85943 -9.82369 -9.73255 -8.97966 -8.95612 -8.42850 -6.60804 -5.59290 -3.05993 2.45712 3.08155 3.43548 3.49234 3.50936 3.52088 3.81758 3.92077 4.11326 4.22749 4.52860 4.58791 4.61753 4.64843 4.80595 4.84427 4.96606 5.19522 5.23374 5.29260 5.33816 5.45040 5.51026 5.55060 5.62774 5.63797 5.69909 5.71344 5.76212 5.81456 6.01486 6.05528 6.15060 6.26436 6.29793 6.48569 6.60137 6.83451 7.05388 7.51888 7.59223 7.85149 7.88866 8.06612 8.19187 8.52169 9.36583 10.00578 10.51511 11.44494 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.002946 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.261837 B = 9503.273271 C = 9789.750737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.596 5.596 3 C -0.257 4.257 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.901 5.901 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.153 3.847 12 C 0.043 3.957 13 O -0.364 6.364 14 C 0.051 3.949 15 C 0.123 3.877 16 N -0.713 5.713 17 C 0.514 3.486 18 O -0.533 6.533 19 C -0.148 4.148 20 H 0.122 0.878 21 C -0.100 4.100 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.156 4.156 25 C 0.298 3.702 26 F -0.187 7.187 27 F -0.192 7.192 28 H 0.032 0.968 29 H 0.036 0.964 30 H -0.007 1.007 31 H 0.251 0.749 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.024 0.976 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.407 0.593 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -23.388 3.386 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.318 5.318 3 C -0.387 4.387 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.546 5.546 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.207 1.207 11 C 0.025 3.975 12 C -0.037 4.037 13 O -0.283 6.283 14 C -0.027 4.027 15 C 0.000 4.000 16 N -0.366 5.366 17 C 0.298 3.702 18 O -0.409 6.409 19 C -0.170 4.170 20 H 0.140 0.860 21 C -0.138 4.138 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.194 4.194 25 C 0.262 3.738 26 F -0.168 7.168 27 F -0.172 7.172 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.012 0.988 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.243 0.757 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.114 0.886 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.018 -22.753 3.973 24.140 hybrid contribution 1.158 0.980 -0.258 1.539 sum -5.859 -21.773 3.715 22.852 Atomic orbital electron populations 1.20673 0.82089 0.94791 0.99323 1.43882 1.02152 1.00190 1.85611 1.19209 0.98157 0.85688 1.35634 0.91601 1.25041 0.97800 0.98348 0.98473 1.70110 1.18039 1.26784 1.39690 0.86298 0.78682 0.84486 0.77290 1.21589 1.21842 1.20655 1.20886 0.96349 0.88950 0.91352 1.23512 0.85069 0.96804 0.98284 1.88044 1.30371 1.87263 1.22613 1.22592 0.95413 0.98397 0.86293 1.21433 0.93735 0.89605 0.95255 1.46071 1.17344 1.34298 1.38910 1.20103 0.81575 0.84500 0.83976 1.90707 1.61873 1.57045 1.31294 1.22446 1.01526 0.99895 0.93160 0.85986 1.21382 0.92250 0.99759 1.00440 1.21648 1.01725 0.97913 0.94821 1.21570 0.95381 1.03056 0.96006 1.22553 0.98632 0.96830 1.01416 1.20874 0.75564 0.84473 0.92935 1.93063 1.73551 1.53694 1.96482 1.93017 1.41089 1.95198 1.87945 0.95011 0.94498 0.98828 0.93914 0.92435 0.93809 0.93353 0.95793 0.92019 0.93897 0.90006 0.90458 0.75669 0.89748 0.89903 0.91387 0.90569 0.90316 0.90556 0.88612 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.75 8.61 59.84 0.52 5.27 16 2 N -0.60 -15.76 2.89 -181.12 -0.52 -16.28 16 3 C -0.26 -7.28 9.67 -15.06 -0.15 -7.43 16 4 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 5 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 6 N -0.90 -27.44 10.62 55.49 0.59 -26.85 16 7 Si 0.90 22.47 29.57 -169.99 -5.03 17.44 16 8 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 9 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.15 3.26 6.11 -4.04 -0.02 3.23 16 12 C 0.04 0.82 6.28 37.16 0.23 1.06 16 13 O -0.36 -7.20 9.84 -35.23 -0.35 -7.55 16 14 C 0.05 0.78 6.07 37.16 0.23 1.01 16 15 C 0.12 1.88 6.06 -4.04 -0.02 1.86 16 16 N -0.71 -10.20 5.19 -60.29 -0.31 -10.52 16 17 C 0.51 7.45 6.89 -10.98 -0.08 7.37 16 18 O -0.53 -9.48 15.98 5.56 0.09 -9.39 16 19 C -0.15 -1.53 2.23 -91.77 -0.20 -1.74 16 20 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.10 -0.92 4.37 -26.73 -0.12 -1.04 16 22 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 23 C -0.12 -0.79 5.80 -26.73 -0.16 -0.94 16 24 C -0.16 -1.17 5.46 -26.70 -0.15 -1.32 16 25 C 0.30 3.38 1.63 -26.71 -0.04 3.33 16 26 F -0.19 -2.79 15.73 2.25 0.04 -2.75 16 27 F -0.19 -2.51 14.82 2.25 0.03 -2.48 16 28 H 0.03 0.94 7.43 -51.93 -0.39 0.55 16 29 H 0.04 1.06 7.20 -51.92 -0.37 0.68 16 30 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 32 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 33 H 0.04 0.88 7.87 -51.93 -0.41 0.48 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.41 5.37 6.63 -40.82 -0.27 5.10 16 41 H 0.08 0.76 8.10 -51.92 -0.42 0.34 16 42 H 0.08 0.94 7.76 -51.93 -0.40 0.54 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.58 7.80 -51.93 -0.41 0.18 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -34.96 388.73 -7.93 -42.88 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.11 Total: -0.09 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -0.21 Total: 9.72 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.25 Total: -53.65 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.26 Total: -16.94 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.07 Total: -5.23 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.96 -7.93 -42.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277507380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.565 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds