Wall clock time and date at job start Tue Mar 31 2020 18:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 119.99792 * 2 1 4 4 H 1.08003 * 120.00075 * 202.70387 * 3 2 1 5 5 C 1.38817 * 120.00208 * 22.70170 * 3 2 1 6 6 N 1.31623 * 119.99659 * 11.50893 * 5 3 2 7 7 Si 1.86792 * 120.00000 * 191.50903 * 5 3 2 8 8 H 1.48491 * 109.47370 * 90.00108 * 7 5 3 9 9 H 1.48501 * 109.46898 * 210.00108 * 7 5 3 10 10 H 1.48503 * 109.47257 * 329.99794 * 7 5 3 11 11 C 1.46495 * 120.00321 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47299 * 270.00566 * 11 2 1 13 13 O 1.42899 * 109.47327 * 64.99854 * 12 11 2 14 14 C 1.42896 * 114.00234 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47085 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47217 * 65.00180 * 15 14 13 17 17 C 1.34781 * 119.99794 * 180.02562 * 16 15 14 18 18 O 1.21280 * 119.99983 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99650 * 179.72118 * 17 16 15 20 20 H 1.09004 * 109.46953 * 60.27296 * 19 17 16 21 21 C 1.52995 * 109.46989 * 180.27496 * 19 17 16 22 22 C 1.53001 * 109.47239 * 180.02562 * 21 19 17 23 23 C 1.52999 * 109.46879 * 299.99560 * 22 21 19 24 24 C 1.53008 * 109.46892 * 60.00326 * 23 22 21 25 25 C 1.52999 * 109.47322 * 300.27174 * 19 17 16 26 26 F 1.39889 * 109.47352 * 300.00235 * 25 19 17 27 27 F 1.39905 * 109.46921 * 60.00527 * 25 19 17 28 28 H 1.08994 * 109.47666 * 273.92088 * 1 2 3 29 29 H 1.09007 * 109.47019 * 33.92747 * 1 2 3 30 30 H 1.09000 * 109.47104 * 153.91837 * 1 2 3 31 31 H 0.97001 * 119.99720 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47266 * 150.00270 * 11 2 1 33 33 H 1.09004 * 109.47035 * 30.00630 * 11 2 1 34 34 H 1.08999 * 109.47001 * 304.99600 * 12 11 2 35 35 H 1.09003 * 109.47116 * 184.99631 * 12 11 2 36 36 H 1.09000 * 109.47104 * 60.00536 * 14 13 12 37 37 H 1.08999 * 109.47018 * 299.99906 * 14 13 12 38 38 H 1.09000 * 109.46823 * 304.99813 * 15 14 13 39 39 H 1.09000 * 109.46855 * 185.00270 * 15 14 13 40 40 H 0.96995 * 120.00193 * 359.97438 * 16 15 14 41 41 H 1.09007 * 109.47023 * 300.00267 * 21 19 17 42 42 H 1.08996 * 109.47608 * 59.99844 * 21 19 17 43 43 H 1.08998 * 109.47314 * 60.00204 * 22 21 19 44 44 H 1.09005 * 109.47003 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.47340 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.47673 * 300.00424 * 23 22 21 47 47 H 1.08998 * 109.46881 * 59.99613 * 24 23 22 48 48 H 1.09001 * 109.46931 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1669 1.2223 -0.3610 5 6 1.5362 2.3416 0.4640 6 7 0.3915 2.2654 1.1093 7 14 2.3352 4.0046 0.1725 8 1 1.8559 4.5650 -1.1164 9 1 1.9743 4.9278 1.2783 10 1 3.8106 3.8433 0.1239 11 6 2.1975 -1.2686 0.0006 12 6 2.4524 -1.7098 1.4432 13 8 1.2059 -1.9927 2.0822 14 6 1.3323 -2.4162 3.4411 15 6 -0.0568 -2.6902 4.0211 16 7 -0.6652 -3.8220 3.3176 17 6 -1.8979 -4.2452 3.6611 18 8 -2.5031 -3.6893 4.5531 19 6 -2.5263 -5.4054 2.9331 20 1 -1.9037 -6.2917 3.0561 21 6 -3.9177 -5.6755 3.5090 22 6 -4.5555 -6.8539 2.7703 23 6 -4.6758 -6.5182 1.2825 24 6 -3.2842 -6.2481 0.7065 25 6 -2.6466 -5.0692 1.4454 26 9 -3.4455 -3.9318 1.2874 27 9 -1.3742 -4.8223 0.9187 28 1 -0.3634 0.0703 1.0252 29 1 -0.3633 0.8528 -0.5736 30 1 -0.3633 -0.9230 -0.4518 31 1 -0.0373 3.0729 1.4331 32 1 3.1499 -1.1385 -0.5133 33 1 1.6085 -2.0285 -0.5130 34 1 2.9641 -0.9123 1.9820 35 1 3.0732 -2.6058 1.4449 36 1 1.8208 -1.6336 4.0216 37 1 1.9296 -3.3269 3.4838 38 1 -0.6828 -1.8065 3.8977 39 1 0.0325 -2.9270 5.0814 40 1 -0.1813 -4.2663 2.6040 41 1 -3.8320 -5.9150 4.5690 42 1 -4.5402 -4.7893 3.3860 43 1 -3.9330 -7.7400 2.8938 44 1 -5.5467 -7.0466 3.1810 45 1 -5.1297 -7.3578 0.7561 46 1 -5.2983 -5.6321 1.1590 47 1 -2.6617 -7.1343 0.8300 48 1 -3.3699 -6.0085 -0.3534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277507380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:28 Heat of formation + Delta-G solvation = -196.843928 kcal Electronic energy + Delta-G solvation = -30930.633521 eV Core-core repulsion = 26462.673470 eV Total energy + Delta-G solvation = -4467.960052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.10631 -48.09218 -41.04348 -39.14755 -38.22496 -37.22764 -35.77543 -33.45260 -32.62599 -31.28607 -30.59387 -29.30945 -27.84171 -25.22314 -24.80767 -23.77184 -23.28334 -22.16510 -21.79655 -20.97106 -18.83101 -18.79170 -18.32069 -17.79271 -17.67792 -17.39688 -17.15741 -16.91910 -16.28749 -15.84678 -15.62190 -15.32864 -15.25919 -15.16215 -14.99289 -14.80532 -14.50744 -14.37224 -14.11828 -14.03611 -13.85516 -13.58149 -13.22630 -13.16810 -13.02885 -12.74402 -12.72719 -12.55646 -12.48175 -12.36626 -12.32425 -12.04002 -11.82936 -11.80285 -11.69784 -11.58554 -11.38471 -10.90223 -10.63442 -10.40215 -10.21394 -8.75619 -7.78878 -5.28033 1.34424 1.45051 1.47160 1.55668 2.02438 2.51623 2.68777 2.83811 3.05443 3.13158 3.32588 3.34073 3.74414 3.79353 3.88379 3.94687 4.01136 4.11407 4.15623 4.23955 4.30671 4.40720 4.49444 4.55857 4.59304 4.60340 4.66547 4.72899 4.82622 4.89124 4.90556 4.97642 5.02909 5.07177 5.18355 5.20528 5.25061 5.31026 5.33295 5.44479 5.64492 5.78421 6.33762 6.38672 6.45626 7.06281 7.16759 7.90033 8.37058 9.24444 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.002946 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.261837 B = 9503.273271 C = 9789.750737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.200 3.800 2 N -0.612 5.612 3 C -0.262 4.262 4 H 0.077 0.923 5 C -0.058 4.058 6 N -0.939 5.939 7 Si 0.970 3.030 8 H -0.287 1.287 9 H -0.299 1.299 10 H -0.264 1.264 11 C 0.145 3.855 12 C 0.052 3.948 13 O -0.395 6.395 14 C 0.053 3.947 15 C 0.127 3.873 16 N -0.709 5.709 17 C 0.504 3.496 18 O -0.575 6.575 19 C -0.140 4.140 20 H 0.164 0.836 21 C -0.100 4.100 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.149 4.149 25 C 0.282 3.718 26 F -0.217 7.217 27 F -0.204 7.204 28 H -0.004 1.004 29 H 0.009 0.991 30 H 0.013 0.987 31 H 0.244 0.756 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.023 0.977 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.098 0.902 40 H 0.414 0.586 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.054 0.946 47 H 0.128 0.872 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 -26.512 2.719 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.336 5.336 3 C -0.392 4.392 4 H 0.095 0.905 5 C -0.253 4.253 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.214 1.214 9 H -0.226 1.226 10 H -0.188 1.188 11 C 0.019 3.981 12 C -0.027 4.027 13 O -0.315 6.315 14 C -0.024 4.024 15 C 0.003 3.997 16 N -0.363 5.363 17 C 0.291 3.709 18 O -0.454 6.454 19 C -0.161 4.161 20 H 0.182 0.818 21 C -0.138 4.138 22 C -0.152 4.152 23 C -0.160 4.160 24 C -0.186 4.186 25 C 0.246 3.754 26 F -0.198 7.198 27 F -0.185 7.185 28 H 0.014 0.986 29 H 0.027 0.973 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.115 0.885 40 H 0.252 0.748 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.073 0.927 47 H 0.147 0.853 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.443 -25.925 3.277 26.692 hybrid contribution 0.700 1.897 -0.051 2.023 sum -4.742 -24.028 3.227 24.703 Atomic orbital electron populations 1.20252 0.83184 0.94371 0.96759 1.44093 1.01867 1.01745 1.85854 1.19619 0.98476 0.86596 1.34481 0.90509 1.25873 0.98544 1.02075 0.98818 1.70315 1.19779 1.27120 1.41362 0.85217 0.78582 0.79750 0.76591 1.21438 1.22574 1.18806 1.21142 0.96775 0.87004 0.93195 1.23263 0.85272 0.98022 0.96166 1.87998 1.31058 1.87734 1.24714 1.22715 0.95669 0.99825 0.84161 1.21318 0.93151 0.88560 0.96668 1.46086 1.17581 1.33713 1.38871 1.20949 0.81205 0.85203 0.83565 1.90682 1.62723 1.58677 1.33346 1.22560 1.02424 0.99262 0.91864 0.81845 1.21398 0.91332 0.99977 1.01060 1.21645 1.02549 0.97099 0.93937 1.21610 0.94563 1.03205 0.96586 1.22627 0.99359 0.95892 1.00752 1.21559 0.75006 0.84771 0.94048 1.93006 1.74388 1.55733 1.96683 1.92981 1.41997 1.95364 1.88170 0.98561 0.97254 0.96873 0.94714 0.90620 0.92529 0.95830 0.91088 0.92439 0.89943 0.94447 0.88451 0.74814 0.89693 0.93228 0.88555 0.89512 0.87515 0.92735 0.85336 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 11.12 8.61 127.77 1.10 12.22 16 2 N -0.61 -32.47 2.89 -726.95 -2.10 -34.57 16 3 C -0.26 -14.80 9.67 84.03 0.81 -13.99 16 4 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 5 C -0.06 -3.42 5.12 84.86 0.43 -2.99 16 6 N -0.94 -59.22 10.62 21.65 0.23 -58.99 16 7 Si 0.97 46.74 29.57 68.60 2.03 48.77 16 8 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 9 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 11 C 0.14 5.94 6.11 86.38 0.53 6.47 16 12 C 0.05 1.89 6.28 71.98 0.45 2.35 16 13 O -0.40 -15.46 9.84 -148.98 -1.47 -16.93 16 14 C 0.05 1.59 6.07 71.98 0.44 2.03 16 15 C 0.13 3.97 6.06 86.38 0.52 4.49 16 16 N -0.71 -20.20 5.19 -463.05 -2.40 -22.60 16 17 C 0.50 14.79 6.89 87.66 0.60 15.39 16 18 O -0.57 -21.42 15.98 -3.03 -0.05 -21.46 16 19 C -0.14 -2.71 2.23 -11.54 -0.03 -2.73 16 20 H 0.16 1.77 8.14 -2.38 -0.02 1.75 16 21 C -0.10 -1.76 4.37 30.59 0.13 -1.63 16 22 C -0.12 -1.07 5.92 30.59 0.18 -0.89 16 23 C -0.12 -1.27 5.80 30.60 0.18 -1.09 16 24 C -0.15 -1.84 5.46 30.61 0.17 -1.67 16 25 C 0.28 6.15 1.63 30.61 0.05 6.20 16 26 F -0.22 -6.77 15.73 44.97 0.71 -6.06 16 27 F -0.20 -5.13 14.82 44.97 0.67 -4.47 16 28 H 0.00 -0.25 7.43 -2.39 -0.02 -0.26 16 29 H 0.01 0.53 7.20 -2.38 -0.02 0.51 16 30 H 0.01 0.65 7.85 -2.39 -0.02 0.63 16 31 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.08 2.81 8.03 -2.39 -0.02 2.79 16 33 H 0.06 2.17 7.87 -2.38 -0.02 2.15 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.41 10.44 6.63 -92.71 -0.61 9.82 16 41 H 0.08 1.47 8.10 -2.38 -0.02 1.45 16 42 H 0.05 1.19 7.76 -2.39 -0.02 1.18 16 43 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.05 0.81 7.80 -2.39 -0.02 0.79 16 47 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -80.44 388.73 3.52 -76.92 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.33 Total: 15.22 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 5.58 Total: 24.18 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -4.27 Total: -116.16 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.52 Total: -38.39 kcal Atomic # 9 Polarization: -11.91 SS G_CDS: 1.37 Total: -10.53 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -80.44 3.52 -76.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277507380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.926 kcal (2) G-P(sol) polarization free energy of solvation -80.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds