Wall clock time and date at job start Tue Mar 31 2020 18:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00323 * 2 1 4 4 H 1.07995 * 120.00731 * 154.46512 * 3 2 1 5 5 C 1.38819 * 119.99606 * 334.46325 * 3 2 1 6 6 N 1.31617 * 120.00004 * 157.48897 * 5 3 2 7 7 Si 1.86807 * 119.99695 * 337.20971 * 5 3 2 8 8 H 1.48506 * 109.46864 * 84.70220 * 7 5 3 9 9 H 1.48502 * 109.46868 * 204.70193 * 7 5 3 10 10 H 1.48498 * 109.47373 * 324.70042 * 7 5 3 11 11 C 1.46507 * 120.00220 * 179.97438 * 2 1 3 12 12 C 1.52992 * 109.47174 * 270.00509 * 11 2 1 13 13 O 1.42900 * 109.47619 * 64.99586 * 12 11 2 14 14 C 1.42901 * 114.00120 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47101 * 180.02562 * 14 13 12 16 16 N 1.46502 * 109.46936 * 65.00452 * 15 14 13 17 17 C 1.34780 * 119.99734 * 180.02562 * 16 15 14 18 18 O 1.21277 * 120.00613 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99763 * 179.97438 * 17 16 15 20 20 H 1.09003 * 109.47026 * 299.99759 * 19 17 16 21 21 C 1.53001 * 109.47172 * 179.97438 * 19 17 16 22 22 C 1.52997 * 109.46911 * 179.97438 * 21 19 17 23 23 C 1.52999 * 109.47364 * 60.00355 * 22 21 19 24 24 C 1.53001 * 109.46817 * 299.99702 * 23 22 21 25 25 F 1.39897 * 109.46916 * 179.97438 * 24 23 22 26 26 F 1.39898 * 109.47113 * 300.00051 * 24 23 22 27 27 C 1.52998 * 109.47065 * 59.99768 * 19 17 16 28 28 H 1.08996 * 109.47012 * 87.88740 * 1 2 3 29 29 H 1.09003 * 109.47013 * 207.88590 * 1 2 3 30 30 H 1.08996 * 109.46790 * 327.88352 * 1 2 3 31 31 H 0.97002 * 119.99595 * 179.97438 * 6 5 3 32 32 H 1.09005 * 109.46378 * 30.00293 * 11 2 1 33 33 H 1.08997 * 109.47121 * 149.99833 * 11 2 1 34 34 H 1.08999 * 109.47053 * 185.00214 * 12 11 2 35 35 H 1.09007 * 109.47272 * 304.99115 * 12 11 2 36 36 H 1.09004 * 109.46899 * 300.00568 * 14 13 12 37 37 H 1.09003 * 109.46874 * 59.99906 * 14 13 12 38 38 H 1.09003 * 109.47152 * 185.00029 * 15 14 13 39 39 H 1.08997 * 109.47612 * 305.00264 * 15 14 13 40 40 H 0.97001 * 120.00122 * 359.97438 * 16 15 14 41 41 H 1.09002 * 109.46679 * 300.00218 * 21 19 17 42 42 H 1.08998 * 109.46973 * 59.99793 * 21 19 17 43 43 H 1.09010 * 109.46798 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.47670 * 299.99726 * 22 21 19 45 45 H 1.09002 * 109.47206 * 59.99025 * 23 22 21 46 46 H 1.09001 * 109.47541 * 179.97438 * 23 22 21 47 47 H 1.08999 * 109.47449 * 300.00117 * 27 19 17 48 48 H 1.09003 * 109.47206 * 60.00101 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1506 1.2316 0.4031 5 6 1.5573 2.3293 -0.5183 6 7 1.9810 3.5177 -0.1433 7 14 0.1641 2.1813 -1.7539 8 1 -1.1217 2.0071 -1.0315 9 1 0.1039 3.4127 -2.5818 10 1 0.4026 1.0067 -2.6305 11 6 2.1976 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4432 13 8 1.2060 -1.9927 2.0822 14 6 1.3324 -2.4161 3.4412 15 6 -0.0565 -2.6901 4.0213 16 7 -0.6649 -3.8219 3.3178 17 6 -1.8976 -4.2451 3.6614 18 8 -2.5029 -3.6893 4.5533 19 6 -2.5237 -5.4091 2.9373 20 1 -2.6127 -5.1721 1.8771 21 6 -3.9127 -5.6832 3.5175 22 6 -4.5485 -6.8644 2.7819 23 6 -3.6700 -8.1052 2.9541 24 6 -2.2811 -7.8311 2.3740 25 9 -1.4776 -8.9654 2.5319 26 9 -2.3959 -7.5261 1.0135 27 6 -1.6453 -6.6497 3.1106 28 1 -0.3633 0.0379 -1.0269 29 1 -0.3633 -0.9084 0.4807 30 1 -0.3633 0.8704 0.5463 31 1 1.5672 4.3167 -0.5057 32 1 1.6084 -2.0286 -0.5130 33 1 3.1499 -1.1386 -0.5133 34 1 3.0733 -2.6058 1.4449 35 1 2.9643 -0.9123 1.9820 36 1 1.9299 -3.3269 3.4839 37 1 1.8212 -1.6335 4.0216 38 1 0.0328 -2.9269 5.0816 39 1 -0.6826 -1.8065 3.8979 40 1 -0.1810 -4.2663 2.6042 41 1 -3.8232 -5.9203 4.5777 42 1 -4.5387 -4.7994 3.3945 43 1 -5.5380 -7.0600 3.1956 44 1 -4.6380 -6.6269 1.7220 45 1 -3.5805 -8.3427 4.0142 46 1 -4.1233 -8.9469 2.4305 47 1 -0.6556 -6.4548 2.6975 48 1 -1.5562 -6.8867 4.1708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277520968.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:37 Heat of formation + Delta-G solvation = -176.118286 kcal Electronic energy + Delta-G solvation = -29815.447645 eV Core-core repulsion = 25348.386324 eV Total energy + Delta-G solvation = -4467.061320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.35361 -47.33840 -40.32764 -38.05953 -37.35100 -35.73334 -34.65479 -32.17152 -31.63337 -30.34814 -29.85546 -28.34942 -25.80735 -24.65221 -23.42036 -23.26074 -22.34573 -21.02066 -20.43089 -20.16462 -18.13858 -17.30853 -16.99248 -16.78934 -16.75517 -16.40156 -16.19018 -15.59925 -15.42963 -14.91358 -14.70174 -14.54333 -14.39358 -14.02312 -13.83175 -13.76112 -13.65143 -13.40006 -13.12375 -12.94378 -12.82768 -12.70751 -12.47670 -12.17213 -12.07350 -11.88721 -11.76680 -11.47820 -11.32417 -11.30131 -11.20163 -10.91484 -10.73963 -10.50261 -10.18789 -10.00523 -9.93114 -9.47405 -9.29219 -9.20404 -8.52232 -6.93401 -5.93334 -3.27079 2.39963 2.92646 3.33695 3.41225 3.53100 3.57354 3.60137 3.82165 3.87814 3.92871 4.36932 4.43460 4.50292 4.59661 4.65007 4.76990 4.84672 4.91335 4.98404 5.03977 5.10211 5.18746 5.33024 5.34483 5.39108 5.40945 5.46405 5.52618 5.56209 5.73990 5.76840 5.88127 5.88862 5.92223 5.97450 6.26882 6.37850 6.46664 6.51752 6.72904 6.90453 7.32157 7.52789 7.99354 8.03288 8.34360 8.99039 9.77261 10.12468 11.22977 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002486 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.731232 B =11258.514472 C =11458.498594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.606 5.606 3 C -0.266 4.266 4 H 0.083 0.917 5 C 0.026 3.974 6 N -0.908 5.908 7 Si 0.892 3.108 8 H -0.287 1.287 9 H -0.307 1.307 10 H -0.280 1.280 11 C 0.153 3.847 12 C 0.043 3.957 13 O -0.374 6.374 14 C 0.048 3.952 15 C 0.123 3.877 16 N -0.719 5.719 17 C 0.520 3.480 18 O -0.538 6.538 19 C -0.107 4.107 20 H 0.109 0.891 21 C -0.104 4.104 22 C -0.120 4.120 23 C -0.160 4.160 24 C 0.292 3.708 25 F -0.201 7.201 26 F -0.196 7.196 27 C -0.151 4.151 28 H 0.000 1.000 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.262 0.738 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.404 0.596 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.810 -25.785 8.776 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.329 5.329 3 C -0.394 4.394 4 H 0.100 0.900 5 C -0.173 4.173 6 N -0.551 5.551 7 Si 0.723 3.277 8 H -0.214 1.214 9 H -0.235 1.235 10 H -0.206 1.206 11 C 0.025 3.975 12 C -0.036 4.036 13 O -0.294 6.294 14 C -0.030 4.030 15 C -0.001 4.001 16 N -0.371 5.371 17 C 0.305 3.695 18 O -0.415 6.415 19 C -0.128 4.128 20 H 0.127 0.873 21 C -0.142 4.142 22 C -0.158 4.158 23 C -0.198 4.198 24 C 0.255 3.745 25 F -0.182 7.182 26 F -0.177 7.177 27 C -0.189 4.189 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.239 0.761 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.400 -25.169 9.277 28.423 hybrid contribution -0.009 -0.229 -1.070 1.094 sum -9.409 -25.398 8.207 28.301 Atomic orbital electron populations 1.21279 0.84347 1.00438 0.97009 1.44047 1.00852 1.01881 1.86119 1.18855 1.01158 0.84608 1.34783 0.89959 1.25203 0.98180 0.95003 0.98959 1.69873 1.44181 0.97199 1.43799 0.86890 0.82520 0.75475 0.82773 1.21378 1.23532 1.20607 1.20838 0.97060 0.88177 0.91411 1.23477 0.85044 0.97554 0.97517 1.87970 1.30828 1.87453 1.23109 1.22653 0.95657 0.98848 0.85802 1.21426 0.93480 0.89568 0.95589 1.45971 1.17608 1.34432 1.39114 1.20321 0.81202 0.84562 0.83420 1.90716 1.61876 1.57877 1.31028 1.21317 0.96348 0.92494 1.02671 0.87272 1.21441 0.93612 0.98857 1.00303 1.21557 0.98928 0.93122 1.02158 1.22564 0.92789 1.00924 1.03473 1.21016 0.91568 0.83380 0.78493 1.93022 1.75916 1.53743 1.95484 1.93019 1.96690 1.93282 1.34723 1.22515 1.00285 0.93044 1.03049 0.98183 0.93775 0.93188 0.92807 0.93694 0.91108 0.94815 0.92993 0.93466 0.91785 0.90308 0.90229 0.76137 0.90550 0.89960 0.89921 0.90604 0.88627 0.89307 0.88894 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.63 8.16 59.85 0.49 3.12 16 2 N -0.61 -14.56 2.66 -181.12 -0.48 -15.04 16 3 C -0.27 -7.47 10.02 -15.06 -0.15 -7.62 16 4 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 5 C 0.03 0.75 5.21 -17.43 -0.09 0.66 16 6 N -0.91 -28.17 13.97 55.49 0.78 -27.39 16 7 Si 0.89 23.27 24.04 -169.99 -4.09 19.18 16 8 H -0.29 -7.26 6.52 56.52 0.37 -6.90 16 9 H -0.31 -8.09 7.11 56.52 0.40 -7.69 16 10 H -0.28 -7.24 6.94 56.52 0.39 -6.84 16 11 C 0.15 2.89 6.06 -4.04 -0.02 2.87 16 12 C 0.04 0.69 6.28 37.15 0.23 0.93 16 13 O -0.37 -5.88 9.15 -35.23 -0.32 -6.21 16 14 C 0.05 0.57 6.07 37.15 0.23 0.79 16 15 C 0.12 1.42 6.06 -4.04 -0.02 1.40 16 16 N -0.72 -7.54 5.40 -60.29 -0.33 -7.86 16 17 C 0.52 5.81 7.15 -10.98 -0.08 5.73 16 18 O -0.54 -7.95 15.98 5.56 0.09 -7.86 16 19 C -0.11 -0.87 2.40 -91.77 -0.22 -1.09 16 20 H 0.11 0.88 7.80 -51.93 -0.41 0.47 16 21 C -0.10 -0.78 4.49 -26.73 -0.12 -0.90 16 22 C -0.12 -0.68 5.80 -26.73 -0.16 -0.83 16 23 C -0.16 -0.89 5.45 -26.73 -0.15 -1.03 16 24 C 0.29 2.20 2.10 -26.70 -0.06 2.14 16 25 F -0.20 -1.82 17.06 2.25 0.04 -1.78 16 26 F -0.20 -1.84 16.02 2.25 0.04 -1.80 16 27 C -0.15 -1.02 4.63 -26.70 -0.12 -1.15 16 28 H 0.00 0.01 5.13 -51.93 -0.27 -0.26 16 29 H 0.04 0.90 7.16 -51.93 -0.37 0.53 16 30 H 0.05 1.24 6.64 -51.93 -0.34 0.90 16 31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 32 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.07 1.30 8.04 -51.93 -0.42 0.89 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.40 3.61 7.89 -40.82 -0.32 3.29 16 41 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 44 H 0.08 0.46 7.80 -51.93 -0.41 0.06 16 45 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.58 7.56 -51.93 -0.39 0.19 16 48 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -34.21 384.84 -6.74 -40.94 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -8.01 Total: -3.01 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -0.24 Total: 5.03 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.03 Total: -50.29 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.23 Total: -14.07 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.07 Total: -3.59 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.09 Total: 19.18 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.21 -6.74 -40.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277520968.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.174 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds