Wall clock time and date at job start Tue Mar 31 2020 18:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00323 * 2 1 4 4 H 1.07995 * 120.00731 * 154.46512 * 3 2 1 5 5 C 1.38819 * 119.99606 * 334.46325 * 3 2 1 6 6 N 1.31617 * 120.00004 * 157.48897 * 5 3 2 7 7 Si 1.86807 * 119.99695 * 337.20971 * 5 3 2 8 8 H 1.48506 * 109.46864 * 84.70220 * 7 5 3 9 9 H 1.48502 * 109.46868 * 204.70193 * 7 5 3 10 10 H 1.48498 * 109.47373 * 324.70042 * 7 5 3 11 11 C 1.46507 * 120.00220 * 179.97438 * 2 1 3 12 12 C 1.52992 * 109.47174 * 270.00509 * 11 2 1 13 13 O 1.42900 * 109.47619 * 64.99586 * 12 11 2 14 14 C 1.42901 * 114.00120 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47101 * 180.02562 * 14 13 12 16 16 N 1.46502 * 109.46936 * 65.00452 * 15 14 13 17 17 C 1.34780 * 119.99734 * 180.02562 * 16 15 14 18 18 O 1.21277 * 120.00613 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99763 * 179.97438 * 17 16 15 20 20 H 1.09003 * 109.47026 * 299.99759 * 19 17 16 21 21 C 1.53001 * 109.47172 * 179.97438 * 19 17 16 22 22 C 1.52997 * 109.46911 * 179.97438 * 21 19 17 23 23 C 1.52999 * 109.47364 * 60.00355 * 22 21 19 24 24 C 1.53001 * 109.46817 * 299.99702 * 23 22 21 25 25 F 1.39897 * 109.46916 * 179.97438 * 24 23 22 26 26 F 1.39898 * 109.47113 * 300.00051 * 24 23 22 27 27 C 1.52998 * 109.47065 * 59.99768 * 19 17 16 28 28 H 1.08996 * 109.47012 * 87.88740 * 1 2 3 29 29 H 1.09003 * 109.47013 * 207.88590 * 1 2 3 30 30 H 1.08996 * 109.46790 * 327.88352 * 1 2 3 31 31 H 0.97002 * 119.99595 * 179.97438 * 6 5 3 32 32 H 1.09005 * 109.46378 * 30.00293 * 11 2 1 33 33 H 1.08997 * 109.47121 * 149.99833 * 11 2 1 34 34 H 1.08999 * 109.47053 * 185.00214 * 12 11 2 35 35 H 1.09007 * 109.47272 * 304.99115 * 12 11 2 36 36 H 1.09004 * 109.46899 * 300.00568 * 14 13 12 37 37 H 1.09003 * 109.46874 * 59.99906 * 14 13 12 38 38 H 1.09003 * 109.47152 * 185.00029 * 15 14 13 39 39 H 1.08997 * 109.47612 * 305.00264 * 15 14 13 40 40 H 0.97001 * 120.00122 * 359.97438 * 16 15 14 41 41 H 1.09002 * 109.46679 * 300.00218 * 21 19 17 42 42 H 1.08998 * 109.46973 * 59.99793 * 21 19 17 43 43 H 1.09010 * 109.46798 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.47670 * 299.99726 * 22 21 19 45 45 H 1.09002 * 109.47206 * 59.99025 * 23 22 21 46 46 H 1.09001 * 109.47541 * 179.97438 * 23 22 21 47 47 H 1.08999 * 109.47449 * 300.00117 * 27 19 17 48 48 H 1.09003 * 109.47206 * 60.00101 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1506 1.2316 0.4031 5 6 1.5573 2.3293 -0.5183 6 7 1.9810 3.5177 -0.1433 7 14 0.1641 2.1813 -1.7539 8 1 -1.1217 2.0071 -1.0315 9 1 0.1039 3.4127 -2.5818 10 1 0.4026 1.0067 -2.6305 11 6 2.1976 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4432 13 8 1.2060 -1.9927 2.0822 14 6 1.3324 -2.4161 3.4412 15 6 -0.0565 -2.6901 4.0213 16 7 -0.6649 -3.8219 3.3178 17 6 -1.8976 -4.2451 3.6614 18 8 -2.5029 -3.6893 4.5533 19 6 -2.5237 -5.4091 2.9373 20 1 -2.6127 -5.1721 1.8771 21 6 -3.9127 -5.6832 3.5175 22 6 -4.5485 -6.8644 2.7819 23 6 -3.6700 -8.1052 2.9541 24 6 -2.2811 -7.8311 2.3740 25 9 -1.4776 -8.9654 2.5319 26 9 -2.3959 -7.5261 1.0135 27 6 -1.6453 -6.6497 3.1106 28 1 -0.3633 0.0379 -1.0269 29 1 -0.3633 -0.9084 0.4807 30 1 -0.3633 0.8704 0.5463 31 1 1.5672 4.3167 -0.5057 32 1 1.6084 -2.0286 -0.5130 33 1 3.1499 -1.1386 -0.5133 34 1 3.0733 -2.6058 1.4449 35 1 2.9643 -0.9123 1.9820 36 1 1.9299 -3.3269 3.4839 37 1 1.8212 -1.6335 4.0216 38 1 0.0328 -2.9269 5.0816 39 1 -0.6826 -1.8065 3.8979 40 1 -0.1810 -4.2663 2.6042 41 1 -3.8232 -5.9203 4.5777 42 1 -4.5387 -4.7994 3.3945 43 1 -5.5380 -7.0600 3.1956 44 1 -4.6380 -6.6269 1.7220 45 1 -3.5805 -8.3427 4.0142 46 1 -4.1233 -8.9469 2.4305 47 1 -0.6556 -6.4548 2.6975 48 1 -1.5562 -6.8867 4.1708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277520968.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:36 Heat of formation + Delta-G solvation = -199.442249 kcal Electronic energy + Delta-G solvation = -29816.459047 eV Core-core repulsion = 25348.386324 eV Total energy + Delta-G solvation = -4468.072723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.97835 -47.97852 -41.17521 -39.21808 -38.09635 -37.38992 -35.75195 -33.77399 -32.73979 -31.13279 -30.90416 -29.57689 -27.81767 -25.39362 -25.06334 -23.86418 -23.19444 -22.13920 -21.74328 -20.85392 -18.89730 -18.83250 -17.96298 -17.75793 -17.53925 -17.38569 -17.20526 -17.03334 -16.51901 -16.23598 -15.64946 -15.59186 -15.39338 -15.12574 -14.91419 -14.69587 -14.49570 -14.32732 -14.29860 -14.17744 -14.05296 -13.70030 -13.60267 -13.33191 -13.26928 -12.87311 -12.76436 -12.65304 -12.41253 -12.26996 -12.25854 -12.10537 -11.85640 -11.80944 -11.76078 -11.54053 -11.48559 -10.81753 -10.70763 -10.40556 -10.13194 -8.92665 -8.17670 -5.46783 1.33725 1.40571 1.50522 1.53525 2.11549 2.43772 2.76460 2.80015 3.06698 3.07402 3.25816 3.35538 3.43610 3.78093 3.82908 3.91116 3.98600 4.15776 4.19027 4.20674 4.32919 4.40397 4.42497 4.48224 4.56675 4.57063 4.60169 4.65378 4.69946 4.77863 4.80175 4.88169 4.90467 4.92761 4.95062 5.05283 5.11093 5.17741 5.23087 5.33740 5.40939 5.86248 6.11920 6.38404 6.49439 6.93874 7.18296 7.65817 8.03303 9.02530 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002486 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.731232 B =11258.514472 C =11458.498594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.619 5.619 3 C -0.249 4.249 4 H 0.056 0.944 5 C -0.034 4.034 6 N -0.955 5.955 7 Si 0.951 3.049 8 H -0.277 1.277 9 H -0.313 1.313 10 H -0.272 1.272 11 C 0.144 3.856 12 C 0.054 3.946 13 O -0.395 6.395 14 C 0.050 3.950 15 C 0.127 3.873 16 N -0.712 5.712 17 C 0.518 3.482 18 O -0.578 6.578 19 C -0.099 4.099 20 H 0.112 0.888 21 C -0.103 4.103 22 C -0.113 4.113 23 C -0.157 4.157 24 C 0.286 3.714 25 F -0.210 7.210 26 F -0.208 7.208 27 C -0.146 4.146 28 H 0.002 0.998 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.414 0.586 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 -28.806 8.626 31.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.343 5.343 3 C -0.379 4.379 4 H 0.074 0.926 5 C -0.229 4.229 6 N -0.602 5.602 7 Si 0.781 3.219 8 H -0.203 1.203 9 H -0.242 1.242 10 H -0.197 1.197 11 C 0.018 3.982 12 C -0.024 4.024 13 O -0.315 6.315 14 C -0.027 4.027 15 C 0.003 3.997 16 N -0.364 5.364 17 C 0.305 3.695 18 O -0.458 6.458 19 C -0.120 4.120 20 H 0.130 0.870 21 C -0.141 4.141 22 C -0.151 4.151 23 C -0.195 4.195 24 C 0.250 3.750 25 F -0.191 7.191 26 F -0.189 7.189 27 C -0.184 4.184 28 H 0.020 0.980 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.250 0.750 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.090 0.910 45 H 0.128 0.872 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.014 -28.262 9.111 31.337 hybrid contribution 0.251 0.626 -0.932 1.151 sum -9.763 -27.636 8.179 30.429 Atomic orbital electron populations 1.21225 0.83815 1.00658 0.96896 1.44203 1.01429 1.02369 1.86347 1.18853 1.00146 0.86230 1.32622 0.92627 1.25818 1.01283 0.94810 1.01004 1.69990 1.46602 0.97924 1.45668 0.85932 0.80299 0.75219 0.80489 1.20295 1.24186 1.19722 1.21126 0.96998 0.86333 0.93697 1.23161 0.85542 0.98531 0.95169 1.87907 1.30742 1.87832 1.24985 1.22767 0.96068 1.00035 0.83784 1.21321 0.92908 0.88925 0.96534 1.45942 1.17545 1.33868 1.39089 1.20833 0.80976 0.84824 0.82867 1.90699 1.62840 1.59316 1.32928 1.21270 0.96717 0.91825 1.02208 0.87040 1.21429 0.93106 0.99081 1.00501 1.21514 0.99572 0.92306 1.01686 1.22594 0.91487 1.01020 1.04355 1.21283 0.92528 0.83224 0.77946 1.93003 1.76334 1.54243 1.95484 1.92996 1.96778 1.93361 1.35807 1.22493 1.00194 0.92016 1.03715 0.98024 0.91127 0.95614 0.93049 0.91340 0.90943 0.90603 0.95552 0.90238 0.92138 0.88994 0.93194 0.74972 0.90677 0.91429 0.88324 0.91022 0.87182 0.88487 0.88165 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.28 8.16 127.77 1.04 6.32 16 2 N -0.62 -29.04 2.66 -726.94 -1.93 -30.98 16 3 C -0.25 -14.09 10.02 84.04 0.84 -13.25 16 4 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 5 C -0.03 -2.04 5.21 84.86 0.44 -1.59 16 6 N -0.96 -60.84 13.97 21.65 0.30 -60.53 16 7 Si 0.95 48.18 24.04 68.60 1.65 49.83 16 8 H -0.28 -13.42 6.52 99.48 0.65 -12.77 16 9 H -0.31 -16.04 7.11 99.48 0.71 -15.34 16 10 H -0.27 -13.26 6.94 99.48 0.69 -12.57 16 11 C 0.14 5.11 6.06 86.38 0.52 5.63 16 12 C 0.05 1.62 6.28 71.98 0.45 2.07 16 13 O -0.39 -11.43 9.15 -148.98 -1.36 -12.80 16 14 C 0.05 1.07 6.07 71.98 0.44 1.51 16 15 C 0.13 2.77 6.06 86.38 0.52 3.29 16 16 N -0.71 -13.57 5.40 -463.06 -2.50 -16.07 16 17 C 0.52 10.95 7.15 87.66 0.63 11.58 16 18 O -0.58 -16.89 15.98 -3.02 -0.05 -16.94 16 19 C -0.10 -1.44 2.40 -11.54 -0.03 -1.47 16 20 H 0.11 1.60 7.80 -2.39 -0.02 1.58 16 21 C -0.10 -1.40 4.49 30.59 0.14 -1.26 16 22 C -0.11 -1.04 5.80 30.59 0.18 -0.87 16 23 C -0.16 -1.36 5.45 30.59 0.17 -1.19 16 24 C 0.29 3.69 2.10 30.61 0.06 3.76 16 25 F -0.21 -3.37 17.06 44.97 0.77 -2.60 16 26 F -0.21 -3.52 16.02 44.97 0.72 -2.80 16 27 C -0.15 -1.65 4.63 30.61 0.14 -1.50 16 28 H 0.00 0.09 5.13 -2.39 -0.01 0.08 16 29 H 0.07 2.73 7.16 -2.39 -0.02 2.72 16 30 H 0.03 1.25 6.64 -2.39 -0.02 1.23 16 31 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.07 2.14 8.07 -2.38 -0.02 2.12 16 33 H 0.07 2.53 8.04 -2.39 -0.02 2.51 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.03 0.91 8.14 -2.38 -0.02 0.90 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.41 6.24 7.89 -92.71 -0.73 5.51 16 41 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 42 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 43 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.07 0.74 7.80 -2.39 -0.02 0.72 16 45 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.10 0.98 7.56 -2.39 -0.02 0.96 16 48 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -74.69 384.84 3.30 -71.40 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.15 Total: 8.47 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 5.55 Total: 13.02 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.13 Total: -107.58 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.41 Total: -29.74 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.49 Total: -5.40 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.65 Total: 49.83 kcal Total: -74.69 3.30 -71.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277520968.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.045 kcal (2) G-P(sol) polarization free energy of solvation -74.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds