Wall clock time and date at job start Tue Mar 31 2020 18:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36936 * 119.99750 * 2 1 4 4 H 1.07995 * 120.00319 * 202.93456 * 3 2 1 5 5 C 1.38821 * 119.99936 * 22.93992 * 3 2 1 6 6 N 1.31614 * 119.99891 * 13.10232 * 5 3 2 7 7 Si 1.86798 * 119.99686 * 193.10863 * 5 3 2 8 8 H 1.48498 * 109.47401 * 59.99924 * 7 5 3 9 9 H 1.48497 * 109.47109 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47029 * 299.99441 * 7 5 3 11 11 C 1.46491 * 120.00170 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47504 * 89.99724 * 11 2 1 13 13 O 1.42896 * 109.46959 * 64.99541 * 12 11 2 14 14 C 1.42903 * 114.00041 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47201 * 180.02562 * 14 13 12 16 16 N 1.46503 * 109.47249 * 64.99920 * 15 14 13 17 17 C 1.34777 * 120.00110 * 179.72589 * 16 15 14 18 18 O 1.21281 * 119.99807 * 0.27211 * 17 16 15 19 19 C 1.50695 * 120.00076 * 180.27665 * 17 16 15 20 20 H 1.09004 * 109.47112 * 60.00208 * 19 17 16 21 21 C 1.53000 * 109.47259 * 179.97438 * 19 17 16 22 22 C 1.52997 * 109.47409 * 179.97438 * 21 19 17 23 23 C 1.53004 * 109.47112 * 300.00079 * 22 21 19 24 24 C 1.53001 * 109.46801 * 59.99995 * 23 22 21 25 25 F 1.39902 * 109.47184 * 60.00256 * 24 23 22 26 26 F 1.39902 * 109.46769 * 179.97438 * 24 23 22 27 27 C 1.52997 * 109.47292 * 299.99895 * 24 23 22 28 28 H 1.09000 * 109.46587 * 275.12101 * 1 2 3 29 29 H 1.08997 * 109.47142 * 35.12202 * 1 2 3 30 30 H 1.08998 * 109.46753 * 155.12305 * 1 2 3 31 31 H 0.96999 * 119.99582 * 180.02562 * 6 5 3 32 32 H 1.09005 * 109.46949 * 329.99684 * 11 2 1 33 33 H 1.09005 * 109.47342 * 209.99926 * 11 2 1 34 34 H 1.09000 * 109.46758 * 305.00272 * 12 11 2 35 35 H 1.08993 * 109.47429 * 185.00216 * 12 11 2 36 36 H 1.08995 * 109.47037 * 60.00427 * 14 13 12 37 37 H 1.09011 * 109.46777 * 300.00379 * 14 13 12 38 38 H 1.09004 * 109.47280 * 304.99926 * 15 14 13 39 39 H 1.09001 * 109.47096 * 184.99734 * 15 14 13 40 40 H 0.96996 * 120.00183 * 0.02562 * 16 15 14 41 41 H 1.09003 * 109.47295 * 300.00093 * 21 19 17 42 42 H 1.09007 * 109.46939 * 59.99724 * 21 19 17 43 43 H 1.08998 * 109.47228 * 59.99841 * 22 21 19 44 44 H 1.08996 * 109.47295 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.47018 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.46880 * 299.99976 * 23 22 21 47 47 H 1.09007 * 109.47195 * 300.00371 * 27 24 23 48 48 H 1.08996 * 109.47295 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1656 1.2230 -0.3644 5 6 1.5379 2.3406 0.4686 6 7 0.4117 2.2605 1.1450 7 14 2.3130 4.0079 0.1389 8 1 2.4150 4.2253 -1.3265 9 1 1.4702 5.0729 0.7393 10 1 3.6695 4.0509 0.7414 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7098 -1.4432 13 8 3.3209 -0.7715 -2.0818 14 6 3.6239 -1.0918 -3.4411 15 6 4.5559 -0.0258 -4.0207 16 7 5.8404 -0.0656 -3.3174 17 6 6.8255 0.7862 -3.6647 18 8 6.6467 1.5889 -4.5561 19 6 8.1490 0.7412 -2.9456 20 1 8.5971 -0.2446 -3.0706 21 6 9.0831 1.8031 -3.5293 22 6 10.4266 1.7578 -2.7987 23 6 10.2072 2.0343 -1.3100 24 6 9.2731 0.9723 -0.7263 25 9 9.8483 -0.2930 -0.8857 26 9 9.0730 1.2249 0.6351 27 6 7.9296 1.0176 -1.4569 28 1 -0.3632 0.0917 1.0236 29 1 -0.3633 0.8405 -0.5912 30 1 -0.3633 -0.9323 -0.4323 31 1 -0.0160 3.0673 1.4721 32 1 1.6085 -2.0285 0.5130 33 1 3.1500 -1.1385 0.5133 34 1 1.5062 -1.7540 -1.9822 35 1 2.9181 -2.6953 -1.4450 36 1 2.7018 -1.1230 -4.0213 37 1 4.1137 -2.0648 -3.4845 38 1 4.1039 0.9583 -3.8964 39 1 4.7160 -0.2209 -5.0810 40 1 5.9836 -0.7078 -2.6048 41 1 9.2391 1.6064 -4.5900 42 1 8.6351 2.7890 -3.4047 43 1 10.8746 0.7719 -2.9229 44 1 11.0918 2.5146 -3.2143 45 1 11.1643 2.0016 -0.7894 46 1 9.7591 3.0202 -1.1858 47 1 7.4815 2.0035 -1.3326 48 1 7.2641 0.2614 -1.0407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277520969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:42 Heat of formation + Delta-G solvation = -178.186018 kcal Electronic energy + Delta-G solvation = -30411.513009 eV Core-core repulsion = 25944.362025 eV Total energy + Delta-G solvation = -4467.150984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -49.12968 -47.10780 -40.16361 -37.88409 -37.17628 -35.45967 -34.47287 -32.00515 -31.37626 -30.15639 -29.42340 -27.78333 -25.75837 -24.48492 -23.13514 -23.04904 -22.19225 -20.85378 -20.31561 -20.00659 -17.94030 -17.10081 -16.72002 -16.61592 -16.57304 -16.34585 -16.05348 -15.45541 -15.22811 -14.57598 -14.48899 -14.30188 -14.16715 -13.76691 -13.67497 -13.45555 -13.41779 -13.19867 -12.97397 -12.84858 -12.68833 -12.49206 -12.21022 -11.99667 -11.81955 -11.55905 -11.31850 -11.15632 -11.05703 -11.00073 -10.84641 -10.73002 -10.71468 -10.42948 -10.28767 -9.87365 -9.80513 -9.71753 -9.12028 -9.03951 -8.42504 -6.64224 -5.60658 -3.05452 2.54777 3.11175 3.46826 3.51616 3.54555 3.55349 3.81894 4.04059 4.05366 4.12059 4.53923 4.60323 4.60692 4.68850 4.83296 4.91959 5.03137 5.08309 5.15199 5.22059 5.40501 5.46967 5.49404 5.52270 5.56205 5.56905 5.63226 5.63880 5.70887 5.84590 5.86822 5.99318 6.02745 6.09049 6.17271 6.38531 6.44349 6.73654 6.82598 7.41669 7.48115 7.70020 7.77990 7.99536 8.18954 8.52506 9.36240 9.98517 10.47104 11.45108 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.003576 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.650148 B = 7827.628808 C = 8643.038130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.232 4.232 4 H 0.072 0.928 5 C -0.004 4.004 6 N -0.915 5.915 7 Si 0.900 3.100 8 H -0.286 1.286 9 H -0.292 1.292 10 H -0.284 1.284 11 C 0.150 3.850 12 C 0.044 3.956 13 O -0.359 6.359 14 C 0.047 3.953 15 C 0.123 3.877 16 N -0.717 5.717 17 C 0.519 3.481 18 O -0.540 6.540 19 C -0.104 4.104 20 H 0.105 0.895 21 C -0.105 4.105 22 C -0.118 4.118 23 C -0.161 4.161 24 C 0.293 3.707 25 F -0.200 7.200 26 F -0.197 7.197 27 C -0.155 4.155 28 H 0.031 0.969 29 H 0.040 0.960 30 H -0.006 1.006 31 H 0.250 0.750 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.404 0.596 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.685 -7.304 -8.965 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.362 4.362 4 H 0.090 0.910 5 C -0.201 4.201 6 N -0.561 5.561 7 Si 0.731 3.269 8 H -0.212 1.212 9 H -0.218 1.218 10 H -0.211 1.211 11 C 0.022 3.978 12 C -0.036 4.036 13 O -0.277 6.277 14 C -0.031 4.031 15 C 0.000 4.000 16 N -0.369 5.369 17 C 0.305 3.695 18 O -0.417 6.417 19 C -0.125 4.125 20 H 0.123 0.877 21 C -0.143 4.143 22 C -0.155 4.155 23 C -0.199 4.199 24 C 0.257 3.743 25 F -0.181 7.181 26 F -0.178 7.178 27 C -0.193 4.193 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.013 0.987 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.239 0.761 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.478 -6.437 -9.393 20.860 hybrid contribution 0.134 0.229 0.227 0.349 sum 17.612 -6.208 -9.166 20.802 Atomic orbital electron populations 1.20800 0.82879 0.95168 0.99434 1.43842 1.01588 1.00734 1.85736 1.19184 0.98213 0.85130 1.33664 0.91040 1.24991 0.98050 0.98346 0.98743 1.70053 1.19725 1.26972 1.39379 0.86392 0.78401 0.84209 0.77921 1.21240 1.21844 1.21056 1.20768 0.96707 0.89272 0.91056 1.23529 0.91925 0.90180 0.97967 1.88141 1.67383 1.49779 1.22427 1.22645 0.97764 0.96385 0.86322 1.21403 0.82416 1.00864 0.95327 1.45928 1.13789 1.38187 1.39009 1.20330 0.85292 0.80452 0.83461 1.90705 1.81939 1.37609 1.31438 1.21277 0.94535 1.02765 0.93918 0.87676 1.21450 0.93574 0.98994 1.00269 1.21536 0.97912 1.03263 0.92829 1.22572 1.00335 0.98942 0.98019 1.20992 0.94328 0.80836 0.78168 1.92987 1.86329 1.43385 1.95408 1.93045 1.95980 1.94149 1.34646 1.22540 0.95566 1.06912 0.94277 0.95064 0.94124 0.98749 0.93978 0.92996 0.92740 0.94330 0.95214 0.92259 0.93727 0.90108 0.90528 0.76117 0.90200 0.90407 0.90818 0.90057 0.89384 0.88481 0.87752 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.98 59.85 0.54 4.56 16 2 N -0.60 -15.08 2.90 -181.12 -0.53 -15.61 16 3 C -0.23 -6.48 9.21 -15.06 -0.14 -6.62 16 4 H 0.07 2.00 7.58 -52.49 -0.40 1.61 16 5 C 0.00 -0.13 5.10 -17.43 -0.09 -0.22 16 6 N -0.91 -27.35 10.71 55.49 0.59 -26.75 16 7 Si 0.90 22.85 29.57 -169.99 -5.03 17.82 16 8 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 9 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 C 0.15 3.01 6.07 -4.05 -0.02 2.99 16 12 C 0.04 0.73 6.28 37.16 0.23 0.97 16 13 O -0.36 -6.31 9.52 -35.23 -0.34 -6.65 16 14 C 0.05 0.61 6.07 37.16 0.23 0.84 16 15 C 0.12 1.65 6.06 -4.04 -0.02 1.62 16 16 N -0.72 -8.95 5.40 -60.29 -0.33 -9.28 16 17 C 0.52 6.81 7.15 -10.99 -0.08 6.74 16 18 O -0.54 -8.96 15.98 5.56 0.09 -8.87 16 19 C -0.10 -1.03 2.40 -91.78 -0.22 -1.25 16 20 H 0.11 0.88 7.80 -51.93 -0.41 0.48 16 21 C -0.11 -0.95 4.49 -26.73 -0.12 -1.07 16 22 C -0.12 -0.83 5.80 -26.73 -0.16 -0.99 16 23 C -0.16 -1.29 5.45 -26.73 -0.15 -1.43 16 24 C 0.29 3.06 2.10 -26.73 -0.06 3.01 16 25 F -0.20 -2.20 16.03 2.25 0.04 -2.16 16 26 F -0.20 -2.55 17.06 2.25 0.04 -2.51 16 27 C -0.15 -1.64 4.63 -26.73 -0.12 -1.77 16 28 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 29 H 0.04 1.09 7.34 -51.93 -0.38 0.71 16 30 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 31 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.05 1.11 8.04 -51.93 -0.42 0.70 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 4.42 7.89 -40.82 -0.32 4.10 16 41 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.08 0.79 8.10 -51.92 -0.42 0.37 16 43 H 0.07 0.50 7.80 -51.93 -0.41 0.10 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 48 H 0.10 1.05 7.57 -51.93 -0.39 0.66 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -33.74 391.70 -7.88 -41.62 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.14 Total: -0.88 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.18 Total: 7.37 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.26 Total: -51.64 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.25 Total: -15.52 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.07 Total: -4.67 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.74 -7.88 -41.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277520969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.570 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds