Wall clock time and date at job start Tue Mar 31 2020 18:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36936 * 119.99750 * 2 1 4 4 H 1.07995 * 120.00319 * 202.93456 * 3 2 1 5 5 C 1.38821 * 119.99936 * 22.93992 * 3 2 1 6 6 N 1.31614 * 119.99891 * 13.10232 * 5 3 2 7 7 Si 1.86798 * 119.99686 * 193.10863 * 5 3 2 8 8 H 1.48498 * 109.47401 * 59.99924 * 7 5 3 9 9 H 1.48497 * 109.47109 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47029 * 299.99441 * 7 5 3 11 11 C 1.46491 * 120.00170 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47504 * 89.99724 * 11 2 1 13 13 O 1.42896 * 109.46959 * 64.99541 * 12 11 2 14 14 C 1.42903 * 114.00041 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47201 * 180.02562 * 14 13 12 16 16 N 1.46503 * 109.47249 * 64.99920 * 15 14 13 17 17 C 1.34777 * 120.00110 * 179.72589 * 16 15 14 18 18 O 1.21281 * 119.99807 * 0.27211 * 17 16 15 19 19 C 1.50695 * 120.00076 * 180.27665 * 17 16 15 20 20 H 1.09004 * 109.47112 * 60.00208 * 19 17 16 21 21 C 1.53000 * 109.47259 * 179.97438 * 19 17 16 22 22 C 1.52997 * 109.47409 * 179.97438 * 21 19 17 23 23 C 1.53004 * 109.47112 * 300.00079 * 22 21 19 24 24 C 1.53001 * 109.46801 * 59.99995 * 23 22 21 25 25 F 1.39902 * 109.47184 * 60.00256 * 24 23 22 26 26 F 1.39902 * 109.46769 * 179.97438 * 24 23 22 27 27 C 1.52997 * 109.47292 * 299.99895 * 24 23 22 28 28 H 1.09000 * 109.46587 * 275.12101 * 1 2 3 29 29 H 1.08997 * 109.47142 * 35.12202 * 1 2 3 30 30 H 1.08998 * 109.46753 * 155.12305 * 1 2 3 31 31 H 0.96999 * 119.99582 * 180.02562 * 6 5 3 32 32 H 1.09005 * 109.46949 * 329.99684 * 11 2 1 33 33 H 1.09005 * 109.47342 * 209.99926 * 11 2 1 34 34 H 1.09000 * 109.46758 * 305.00272 * 12 11 2 35 35 H 1.08993 * 109.47429 * 185.00216 * 12 11 2 36 36 H 1.08995 * 109.47037 * 60.00427 * 14 13 12 37 37 H 1.09011 * 109.46777 * 300.00379 * 14 13 12 38 38 H 1.09004 * 109.47280 * 304.99926 * 15 14 13 39 39 H 1.09001 * 109.47096 * 184.99734 * 15 14 13 40 40 H 0.96996 * 120.00183 * 0.02562 * 16 15 14 41 41 H 1.09003 * 109.47295 * 300.00093 * 21 19 17 42 42 H 1.09007 * 109.46939 * 59.99724 * 21 19 17 43 43 H 1.08998 * 109.47228 * 59.99841 * 22 21 19 44 44 H 1.08996 * 109.47295 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.47018 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.46880 * 299.99976 * 23 22 21 47 47 H 1.09007 * 109.47195 * 300.00371 * 27 24 23 48 48 H 1.08996 * 109.47295 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1656 1.2230 -0.3644 5 6 1.5379 2.3406 0.4686 6 7 0.4117 2.2605 1.1450 7 14 2.3130 4.0079 0.1389 8 1 2.4150 4.2253 -1.3265 9 1 1.4702 5.0729 0.7393 10 1 3.6695 4.0509 0.7414 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7098 -1.4432 13 8 3.3209 -0.7715 -2.0818 14 6 3.6239 -1.0918 -3.4411 15 6 4.5559 -0.0258 -4.0207 16 7 5.8404 -0.0656 -3.3174 17 6 6.8255 0.7862 -3.6647 18 8 6.6467 1.5889 -4.5561 19 6 8.1490 0.7412 -2.9456 20 1 8.5971 -0.2446 -3.0706 21 6 9.0831 1.8031 -3.5293 22 6 10.4266 1.7578 -2.7987 23 6 10.2072 2.0343 -1.3100 24 6 9.2731 0.9723 -0.7263 25 9 9.8483 -0.2930 -0.8857 26 9 9.0730 1.2249 0.6351 27 6 7.9296 1.0176 -1.4569 28 1 -0.3632 0.0917 1.0236 29 1 -0.3633 0.8405 -0.5912 30 1 -0.3633 -0.9323 -0.4323 31 1 -0.0160 3.0673 1.4721 32 1 1.6085 -2.0285 0.5130 33 1 3.1500 -1.1385 0.5133 34 1 1.5062 -1.7540 -1.9822 35 1 2.9181 -2.6953 -1.4450 36 1 2.7018 -1.1230 -4.0213 37 1 4.1137 -2.0648 -3.4845 38 1 4.1039 0.9583 -3.8964 39 1 4.7160 -0.2209 -5.0810 40 1 5.9836 -0.7078 -2.6048 41 1 9.2391 1.6064 -4.5900 42 1 8.6351 2.7890 -3.4047 43 1 10.8746 0.7719 -2.9229 44 1 11.0918 2.5146 -3.2143 45 1 11.1643 2.0016 -0.7894 46 1 9.7591 3.0202 -1.1858 47 1 7.4815 2.0035 -1.3326 48 1 7.2641 0.2614 -1.0407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277520969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:41 Heat of formation + Delta-G solvation = -199.835395 kcal Electronic energy + Delta-G solvation = -30412.451797 eV Core-core repulsion = 25944.362025 eV Total energy + Delta-G solvation = -4468.089771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.00739 -48.00201 -41.17605 -39.12111 -38.08757 -37.19570 -35.73041 -33.45440 -32.69580 -30.93717 -30.72802 -29.24585 -27.85355 -25.36698 -24.85001 -23.87040 -23.18797 -22.08379 -21.75054 -20.87242 -18.87572 -18.65435 -17.97191 -17.70937 -17.60177 -17.36160 -17.18534 -16.88981 -16.30471 -16.08256 -15.58142 -15.43860 -15.29036 -15.14142 -14.93263 -14.74382 -14.47297 -14.33410 -14.15616 -13.94965 -13.76428 -13.62837 -13.32283 -13.22369 -12.93805 -12.77828 -12.70194 -12.66729 -12.52944 -12.31896 -12.19889 -12.03686 -11.86867 -11.84359 -11.76999 -11.69956 -11.50170 -10.80810 -10.58139 -10.35368 -10.12794 -8.69928 -7.77286 -5.22789 1.41776 1.44408 1.50416 1.51023 2.14360 2.52591 2.73934 2.87894 3.04724 3.24621 3.31738 3.36707 3.74856 3.76680 3.82234 3.91220 4.00408 4.12517 4.17412 4.22079 4.30697 4.39813 4.43391 4.53733 4.58844 4.63553 4.67510 4.69602 4.79605 4.87415 4.88645 4.89850 4.91584 4.93599 5.10843 5.14768 5.19423 5.33612 5.39983 5.41628 5.72018 5.77434 6.38596 6.48242 6.52622 7.17289 7.22736 7.95363 8.36951 9.26119 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.003576 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.650148 B = 7827.628808 C = 8643.038130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.615 5.615 3 C -0.225 4.225 4 H 0.066 0.934 5 C -0.059 4.059 6 N -0.944 5.944 7 Si 0.953 3.047 8 H -0.289 1.289 9 H -0.294 1.294 10 H -0.277 1.277 11 C 0.143 3.857 12 C 0.054 3.946 13 O -0.393 6.393 14 C 0.050 3.950 15 C 0.125 3.875 16 N -0.713 5.713 17 C 0.515 3.485 18 O -0.579 6.579 19 C -0.093 4.093 20 H 0.127 0.873 21 C -0.104 4.104 22 C -0.109 4.109 23 C -0.159 4.159 24 C 0.289 3.711 25 F -0.201 7.201 26 F -0.214 7.214 27 C -0.154 4.154 28 H 0.005 0.995 29 H 0.009 0.991 30 H 0.033 0.967 31 H 0.244 0.756 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.413 0.587 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.580 -8.974 -9.885 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.338 5.338 3 C -0.356 4.356 4 H 0.084 0.916 5 C -0.253 4.253 6 N -0.592 5.592 7 Si 0.783 3.217 8 H -0.216 1.216 9 H -0.220 1.220 10 H -0.203 1.203 11 C 0.017 3.983 12 C -0.025 4.025 13 O -0.313 6.313 14 C -0.027 4.027 15 C 0.002 3.998 16 N -0.364 5.364 17 C 0.302 3.698 18 O -0.458 6.458 19 C -0.114 4.114 20 H 0.145 0.855 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.196 4.196 24 C 0.253 3.747 25 F -0.183 7.183 26 F -0.195 7.195 27 C -0.193 4.193 28 H 0.023 0.977 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.249 0.751 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.110 0.890 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.401 -8.164 -10.310 23.438 hybrid contribution -0.444 0.639 0.480 0.914 sum 18.957 -7.525 -9.830 22.641 Atomic orbital electron populations 1.20540 0.83026 0.95796 0.97591 1.44087 1.01887 1.01869 1.85965 1.19354 0.97925 0.86436 1.31892 0.91582 1.25614 0.98920 1.01153 0.99603 1.70196 1.21007 1.27061 1.40981 0.85542 0.77856 0.80987 0.77311 1.21589 1.22004 1.20331 1.21041 0.96048 0.87554 0.93678 1.23244 0.92418 0.91596 0.95242 1.88079 1.67559 1.50961 1.24667 1.22765 0.98205 0.97554 0.84163 1.21345 0.82769 0.99182 0.96550 1.45942 1.13360 1.38156 1.38978 1.20893 0.86252 0.79643 0.82993 1.90685 1.82764 1.39099 1.33301 1.21262 0.92971 1.04328 0.92861 0.85505 1.21452 0.94385 0.97789 1.00582 1.21513 0.96864 1.04494 0.91747 1.22617 1.00334 0.98058 0.98627 1.21214 0.94670 0.81469 0.77302 1.92980 1.86282 1.43665 1.95333 1.93011 1.96126 1.94281 1.36085 1.22501 0.95888 1.06042 0.94826 0.97662 0.97182 0.94836 0.94661 0.90843 0.93527 0.94568 0.91011 0.91636 0.90344 0.93812 0.88791 0.75091 0.90153 0.91921 0.89929 0.88072 0.87973 0.88224 0.89039 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.72 8.98 127.77 1.15 9.86 16 2 N -0.61 -30.81 2.90 -726.93 -2.11 -32.92 16 3 C -0.23 -12.66 9.21 84.04 0.77 -11.88 16 4 H 0.07 3.73 7.58 -2.91 -0.02 3.71 16 5 C -0.06 -3.45 5.10 84.86 0.43 -3.02 16 6 N -0.94 -57.68 10.71 21.65 0.23 -57.44 16 7 Si 0.95 47.90 29.57 68.60 2.03 49.93 16 8 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 9 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 10 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 11 C 0.14 5.46 6.07 86.38 0.52 5.99 16 12 C 0.05 1.65 6.28 71.98 0.45 2.10 16 13 O -0.39 -13.11 9.52 -148.98 -1.42 -14.53 16 14 C 0.05 1.19 6.07 71.98 0.44 1.63 16 15 C 0.13 3.24 6.06 86.38 0.52 3.76 16 16 N -0.71 -17.03 5.40 -463.06 -2.50 -19.53 16 17 C 0.52 13.23 7.15 87.66 0.63 13.86 16 18 O -0.58 -19.29 15.98 -3.03 -0.05 -19.34 16 19 C -0.09 -1.73 2.40 -11.54 -0.03 -1.76 16 20 H 0.13 1.83 7.80 -2.38 -0.02 1.81 16 21 C -0.10 -1.75 4.49 30.59 0.14 -1.61 16 22 C -0.11 -1.27 5.80 30.59 0.18 -1.09 16 23 C -0.16 -2.23 5.45 30.60 0.17 -2.06 16 24 C 0.29 5.67 2.10 30.59 0.06 5.74 16 25 F -0.20 -4.03 16.03 44.97 0.72 -3.31 16 26 F -0.21 -5.39 17.06 44.97 0.77 -4.62 16 27 C -0.15 -3.17 4.63 30.59 0.14 -3.03 16 28 H 0.01 0.28 7.34 -2.39 -0.02 0.26 16 29 H 0.01 0.52 7.34 -2.39 -0.02 0.50 16 30 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 31 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.07 2.47 8.07 -2.38 -0.02 2.45 16 33 H 0.05 1.84 8.04 -2.38 -0.02 1.82 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.41 8.34 7.89 -92.71 -0.73 7.61 16 41 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 42 H 0.06 1.25 8.10 -2.38 -0.02 1.23 16 43 H 0.08 0.86 7.80 -2.39 -0.02 0.84 16 44 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 48 H 0.09 1.96 7.57 -2.39 -0.02 1.94 16 Total: -1.00 -74.12 391.70 3.47 -70.66 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.22 Total: 12.63 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 5.58 Total: 18.48 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -4.38 Total: -109.90 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.47 Total: -33.86 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 1.49 Total: -7.93 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -74.12 3.47 -70.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277520969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.179 kcal (2) G-P(sol) polarization free energy of solvation -74.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds