Wall clock time and date at job start Tue Mar 31 2020 19:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48496 * 109.47252 * 239.99900 * 3 2 1 5 5 H 1.48499 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46843 * 119.99948 * 3 2 1 7 7 C 1.37876 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.53504 * 114.20578 * 180.02562 * 9 7 2 11 11 N 1.47066 * 88.04678 * 139.68331 * 10 9 7 12 12 C 1.34784 * 136.05409 * 152.81416 * 11 10 9 13 13 O 1.21275 * 119.99871 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99609 * 179.97438 * 12 11 10 15 15 H 1.08997 * 110.27144 * 304.30110 * 14 12 11 16 16 C 1.55004 * 110.30420 * 66.37425 * 14 12 11 17 17 C 1.55568 * 100.97959 * 154.93794 * 16 14 12 18 18 C 1.53771 * 102.07152 * 326.53112 * 17 16 14 19 19 C 1.53263 * 114.71942 * 151.64429 * 18 17 16 20 20 N 1.48083 * 85.98469 * 92.50967 * 19 18 17 21 21 C 1.46905 * 111.00240 * 137.14634 * 20 19 18 22 22 C 1.52997 * 109.46967 * 70.51326 * 21 20 19 23 23 C 1.52998 * 109.47028 * 179.97438 * 22 21 20 24 24 C 1.52996 * 117.50194 * 243.62614 * 23 22 21 25 25 C 1.53004 * 60.00185 * 252.50912 * 24 23 22 26 26 C 1.48084 * 90.87111 * 24.20782 * 20 19 18 27 27 O 1.42530 * 108.37712 * 20.88373 * 18 17 16 28 28 C 1.47063 * 87.88808 * 332.85048 * 11 10 9 29 29 H 0.97005 * 119.99959 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.41688 * 46.80077 * 9 7 2 31 31 H 1.09002 * 113.46865 * 24.87426 * 10 9 7 32 32 H 1.08999 * 113.46581 * 254.49202 * 10 9 7 33 33 H 1.08992 * 111.10889 * 272.95464 * 16 14 12 34 34 H 1.09007 * 111.10803 * 37.07390 * 16 14 12 35 35 H 1.08997 * 110.95389 * 208.30251 * 17 16 14 36 36 H 1.09006 * 110.85907 * 84.71443 * 17 16 14 37 37 H 1.09004 * 113.79203 * 206.77643 * 19 18 17 38 38 H 1.08999 * 113.79065 * 338.24362 * 19 18 17 39 39 H 1.09003 * 109.47099 * 190.51795 * 21 20 19 40 40 H 1.08998 * 109.46994 * 310.51562 * 21 20 19 41 41 H 1.08994 * 109.47742 * 300.00382 * 22 21 20 42 42 H 1.09005 * 109.46917 * 60.00620 * 22 21 20 43 43 H 1.09005 * 115.54892 * 29.33880 * 23 22 21 44 44 H 1.08996 * 117.49973 * 359.97438 * 24 23 22 45 45 H 1.09004 * 117.49829 * 145.02673 * 24 23 22 46 46 H 1.08994 * 117.50430 * 252.51289 * 25 24 23 47 47 H 1.09004 * 117.49929 * 107.48565 * 25 24 23 48 48 H 1.09000 * 113.79575 * 221.53069 * 26 20 19 49 49 H 1.09005 * 113.89817 * 90.07492 * 26 20 19 50 50 H 1.08994 * 113.46736 * 141.90207 * 28 11 10 51 51 H 1.09003 * 113.46602 * 272.28166 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.1486 -3.7443 0.0018 11 7 1.2095 -4.3586 0.9523 12 6 0.8345 -5.6130 1.2726 13 8 1.3295 -6.5593 0.6978 14 6 -0.1989 -5.8396 2.3458 15 1 0.1107 -5.3615 3.2751 16 6 -1.5755 -5.2910 1.8914 17 6 -2.5390 -6.1640 2.7455 18 6 -1.7793 -7.4986 2.8240 19 6 -2.0653 -8.3258 4.0822 20 7 -3.1180 -8.9900 3.2800 21 6 -3.1128 -10.4419 3.5034 22 6 -3.6232 -10.7426 4.9140 23 6 -3.6185 -12.2548 5.1465 24 6 -4.9669 -12.9372 5.3850 25 6 -3.9856 -12.7558 6.5448 26 6 -2.4119 -8.6436 2.0252 27 8 -0.4025 -7.2486 2.5530 28 6 0.8589 -3.0020 1.3989 29 1 -0.4850 0.8401 -0.0004 30 1 0.4416 -2.5321 -0.7289 31 1 3.1379 -3.5657 0.4230 32 1 2.1863 -4.2531 -0.9614 33 1 -1.6778 -4.2343 2.1382 34 1 -1.7335 -5.4605 0.8262 35 1 -3.4982 -6.2910 2.2436 36 1 -2.6750 -5.7345 3.7381 37 1 -1.2477 -8.9874 4.3688 38 1 -2.4520 -7.7392 4.9156 39 1 -3.7610 -10.9244 2.7718 40 1 -2.0971 -10.8225 3.3958 41 1 -2.9752 -10.2601 5.6455 42 1 -4.6390 -10.3621 5.0216 43 1 -2.8622 -12.8130 4.5944 44 1 -5.8574 -12.3088 5.3767 45 1 -5.0981 -13.9446 4.9897 46 1 -3.4712 -13.6436 6.9124 47 1 -4.2306 -12.0080 7.2991 48 1 -3.0736 -8.3092 1.2262 49 1 -1.6972 -9.3987 1.6978 50 1 -0.2006 -2.8791 1.6233 51 1 1.5041 -2.6261 2.1930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278211989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:56 Heat of formation + Delta-G solvation = 15.019479 kcal Electronic energy + Delta-G solvation = -28689.572701 eV Core-core repulsion = 24785.029266 eV Total energy + Delta-G solvation = -3904.543435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.09629 -39.53425 -38.25988 -37.52731 -36.54788 -32.77843 -32.46059 -32.03568 -29.67003 -28.10031 -26.53475 -25.71312 -25.03257 -24.50362 -22.76164 -22.35181 -21.98581 -20.75170 -20.40944 -19.37229 -18.27946 -17.25508 -16.65688 -16.49090 -16.16928 -16.10090 -15.68025 -15.38448 -14.84345 -14.57881 -14.47315 -14.20070 -13.93177 -13.78497 -13.31953 -13.09076 -12.85926 -12.62629 -12.37617 -12.21687 -12.02569 -11.86553 -11.83740 -11.63757 -11.55268 -11.53126 -11.42775 -11.29898 -10.97659 -10.88151 -10.80793 -10.78797 -10.44672 -10.37411 -10.21142 -9.79238 -9.47967 -9.23758 -9.15288 -8.89956 -8.61230 -7.90586 -6.22347 -4.27890 2.99031 3.18668 3.23076 3.28622 3.31729 3.40830 3.62719 3.95131 4.20327 4.29810 4.30201 4.50615 4.52268 4.55502 4.60003 4.80852 4.85003 4.89427 5.04410 5.06218 5.07951 5.15271 5.26021 5.27500 5.31015 5.37492 5.45834 5.49687 5.53883 5.60521 5.65749 5.66378 5.72939 5.75103 5.83625 5.89378 5.97289 5.98786 6.06535 6.09222 6.14048 6.22930 6.41038 6.50529 6.58750 6.74515 6.75905 7.01692 7.50674 7.75410 8.13836 8.46486 8.72768 8.76043 9.39122 10.87298 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.032919 B = 0.001881 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.359291 B =14878.834897 C =15283.958176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.102 3.898 11 N -0.642 5.642 12 C 0.533 3.467 13 O -0.548 6.548 14 C 0.071 3.929 15 H 0.094 0.906 16 C -0.143 4.143 17 C -0.119 4.119 18 C 0.077 3.923 19 C 0.001 3.999 20 N -0.474 5.474 21 C 0.026 3.974 22 C -0.083 4.083 23 C -0.153 4.153 24 C -0.180 4.180 25 C -0.181 4.181 26 C 0.003 3.997 27 O -0.337 6.337 28 C 0.095 3.905 29 H 0.265 0.735 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.061 0.939 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.895 -17.696 10.879 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.020 4.020 11 N -0.378 5.378 12 C 0.321 3.679 13 O -0.426 6.426 14 C 0.010 3.990 15 H 0.112 0.888 16 C -0.180 4.180 17 C -0.157 4.157 18 C 0.036 3.964 19 C -0.127 4.127 20 N -0.198 5.198 21 C -0.103 4.103 22 C -0.121 4.121 23 C -0.172 4.172 24 C -0.217 4.217 25 C -0.218 4.218 26 C -0.125 4.125 27 O -0.254 6.254 28 C -0.027 4.027 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.079 0.921 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.390 -18.290 10.712 23.606 hybrid contribution 1.151 0.595 0.115 1.300 sum -9.240 -17.695 10.827 22.710 Atomic orbital electron populations 1.69933 1.06056 1.27278 1.48959 1.25017 0.94875 0.99379 0.94164 0.86590 0.79601 0.82599 0.78859 1.20028 1.21219 1.20071 1.20869 0.93018 0.89528 1.52226 0.91854 1.20364 0.94739 0.91102 0.92064 1.23354 0.94321 0.92990 0.91350 1.49933 1.42674 1.04553 1.40595 1.19813 0.83074 0.81522 0.83521 1.90651 1.57096 1.40855 1.54015 1.22784 0.95524 0.83084 0.97608 0.88848 1.23300 0.91975 1.01322 1.01450 1.22783 0.99138 0.92393 1.01343 1.23514 0.82413 0.95381 0.95088 1.24384 0.93845 0.97367 0.97154 1.68495 1.37765 1.09523 1.04004 1.22616 1.00280 0.89564 0.97802 1.21098 1.02217 0.92684 0.96109 1.22303 0.99124 0.96036 0.99721 1.23041 0.93678 1.01946 1.03044 1.22960 1.03966 1.03253 0.91670 1.24338 0.96383 0.97281 0.94517 1.88470 1.24015 1.22535 1.90405 1.23726 0.99798 0.76846 1.02356 0.92556 0.91297 0.90822 0.92431 0.88399 0.89770 0.89003 0.89775 0.90368 0.88803 0.90370 0.93901 0.91582 0.90961 0.87897 0.88705 0.88985 0.88915 0.88786 0.88669 0.90227 0.92077 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.35 13.26 55.43 0.74 -22.61 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.52 -12.85 8.83 -34.44 -0.30 -13.15 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.04 0.83 3.79 -91.16 -0.35 0.48 16 10 C 0.10 2.10 8.17 -8.50 -0.07 2.03 16 11 N -0.64 -12.91 3.69 -184.96 -0.68 -13.60 16 12 C 0.53 10.74 7.42 -10.98 -0.08 10.66 16 13 O -0.55 -13.01 17.32 -13.76 -0.24 -13.25 16 14 C 0.07 1.13 3.70 -26.82 -0.10 1.03 16 15 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 16 C -0.14 -1.94 6.33 -24.31 -0.15 -2.09 16 17 C -0.12 -1.33 6.32 -24.96 -0.16 -1.48 16 18 C 0.08 0.96 1.68 -90.02 -0.15 0.81 16 19 C 0.00 0.01 6.61 -3.04 -0.02 -0.01 16 20 N -0.47 -4.88 6.23 -241.60 -1.51 -6.39 16 21 C 0.03 0.23 4.77 -3.82 -0.02 0.21 16 22 C -0.08 -0.65 5.56 -26.73 -0.15 -0.80 16 23 C -0.15 -1.09 5.74 -90.62 -0.52 -1.61 16 24 C -0.18 -1.17 10.18 -26.73 -0.27 -1.44 16 25 C -0.18 -1.18 10.25 -26.73 -0.27 -1.45 16 26 C 0.00 0.04 7.41 -3.03 -0.02 0.02 16 27 O -0.34 -5.52 10.39 -54.55 -0.57 -6.09 16 28 C 0.10 1.91 7.89 -8.41 -0.07 1.84 16 29 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 31 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.10 1.27 6.96 -51.93 -0.36 0.91 16 34 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 35 H 0.09 0.94 7.83 -51.93 -0.41 0.53 16 36 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 37 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 38 H 0.09 0.87 8.01 -51.93 -0.42 0.46 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.40 7.70 -51.93 -0.40 0.00 16 41 H 0.07 0.53 7.54 -51.93 -0.39 0.14 16 42 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 43 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 44 H 0.09 0.60 8.03 -51.93 -0.42 0.18 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.10 1.04 7.98 -51.93 -0.41 0.63 16 49 H 0.08 0.97 7.80 -51.93 -0.41 0.57 16 50 H 0.06 1.17 6.80 -51.93 -0.35 0.82 16 51 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 LS Contribution 409.58 15.07 6.17 6.17 Total: -1.00 -29.03 409.58 -12.88 -41.91 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.97 Total: 2.54 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.80 Total: -3.29 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -1.45 Total: -42.60 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.80 Total: -19.34 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -29.03 -12.88 -41.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278211989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.929 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds