Wall clock time and date at job start Tue Mar 31 2020 19:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48496 * 109.47252 * 239.99900 * 3 2 1 5 5 H 1.48499 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46843 * 119.99948 * 3 2 1 7 7 C 1.37876 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.53504 * 114.20578 * 180.02562 * 9 7 2 11 11 N 1.47066 * 88.04678 * 139.68331 * 10 9 7 12 12 C 1.34784 * 136.05409 * 152.81416 * 11 10 9 13 13 O 1.21275 * 119.99871 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99609 * 179.97438 * 12 11 10 15 15 H 1.08997 * 110.27144 * 304.30110 * 14 12 11 16 16 C 1.55004 * 110.30420 * 66.37425 * 14 12 11 17 17 C 1.55568 * 100.97959 * 154.93794 * 16 14 12 18 18 C 1.53771 * 102.07152 * 326.53112 * 17 16 14 19 19 C 1.53263 * 114.71942 * 151.64429 * 18 17 16 20 20 N 1.48083 * 85.98469 * 92.50967 * 19 18 17 21 21 C 1.46905 * 111.00240 * 137.14634 * 20 19 18 22 22 C 1.52997 * 109.46967 * 70.51326 * 21 20 19 23 23 C 1.52998 * 109.47028 * 179.97438 * 22 21 20 24 24 C 1.52996 * 117.50194 * 243.62614 * 23 22 21 25 25 C 1.53004 * 60.00185 * 252.50912 * 24 23 22 26 26 C 1.48084 * 90.87111 * 24.20782 * 20 19 18 27 27 O 1.42530 * 108.37712 * 20.88373 * 18 17 16 28 28 C 1.47063 * 87.88808 * 332.85048 * 11 10 9 29 29 H 0.97005 * 119.99959 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.41688 * 46.80077 * 9 7 2 31 31 H 1.09002 * 113.46865 * 24.87426 * 10 9 7 32 32 H 1.08999 * 113.46581 * 254.49202 * 10 9 7 33 33 H 1.08992 * 111.10889 * 272.95464 * 16 14 12 34 34 H 1.09007 * 111.10803 * 37.07390 * 16 14 12 35 35 H 1.08997 * 110.95389 * 208.30251 * 17 16 14 36 36 H 1.09006 * 110.85907 * 84.71443 * 17 16 14 37 37 H 1.09004 * 113.79203 * 206.77643 * 19 18 17 38 38 H 1.08999 * 113.79065 * 338.24362 * 19 18 17 39 39 H 1.09003 * 109.47099 * 190.51795 * 21 20 19 40 40 H 1.08998 * 109.46994 * 310.51562 * 21 20 19 41 41 H 1.08994 * 109.47742 * 300.00382 * 22 21 20 42 42 H 1.09005 * 109.46917 * 60.00620 * 22 21 20 43 43 H 1.09005 * 115.54892 * 29.33880 * 23 22 21 44 44 H 1.08996 * 117.49973 * 359.97438 * 24 23 22 45 45 H 1.09004 * 117.49829 * 145.02673 * 24 23 22 46 46 H 1.08994 * 117.50430 * 252.51289 * 25 24 23 47 47 H 1.09004 * 117.49929 * 107.48565 * 25 24 23 48 48 H 1.09000 * 113.79575 * 221.53069 * 26 20 19 49 49 H 1.09005 * 113.89817 * 90.07492 * 26 20 19 50 50 H 1.08994 * 113.46736 * 141.90207 * 28 11 10 51 51 H 1.09003 * 113.46602 * 272.28166 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.1486 -3.7443 0.0018 11 7 1.2095 -4.3586 0.9523 12 6 0.8345 -5.6130 1.2726 13 8 1.3295 -6.5593 0.6978 14 6 -0.1989 -5.8396 2.3458 15 1 0.1107 -5.3615 3.2751 16 6 -1.5755 -5.2910 1.8914 17 6 -2.5390 -6.1640 2.7455 18 6 -1.7793 -7.4986 2.8240 19 6 -2.0653 -8.3258 4.0822 20 7 -3.1180 -8.9900 3.2800 21 6 -3.1128 -10.4419 3.5034 22 6 -3.6232 -10.7426 4.9140 23 6 -3.6185 -12.2548 5.1465 24 6 -4.9669 -12.9372 5.3850 25 6 -3.9856 -12.7558 6.5448 26 6 -2.4119 -8.6436 2.0252 27 8 -0.4025 -7.2486 2.5530 28 6 0.8589 -3.0020 1.3989 29 1 -0.4850 0.8401 -0.0004 30 1 0.4416 -2.5321 -0.7289 31 1 3.1379 -3.5657 0.4230 32 1 2.1863 -4.2531 -0.9614 33 1 -1.6778 -4.2343 2.1382 34 1 -1.7335 -5.4605 0.8262 35 1 -3.4982 -6.2910 2.2436 36 1 -2.6750 -5.7345 3.7381 37 1 -1.2477 -8.9874 4.3688 38 1 -2.4520 -7.7392 4.9156 39 1 -3.7610 -10.9244 2.7718 40 1 -2.0971 -10.8225 3.3958 41 1 -2.9752 -10.2601 5.6455 42 1 -4.6390 -10.3621 5.0216 43 1 -2.8622 -12.8130 4.5944 44 1 -5.8574 -12.3088 5.3767 45 1 -5.0981 -13.9446 4.9897 46 1 -3.4712 -13.6436 6.9124 47 1 -4.2306 -12.0080 7.2991 48 1 -3.0736 -8.3092 1.2262 49 1 -1.6972 -9.3987 1.6978 50 1 -0.2006 -2.8791 1.6233 51 1 1.5041 -2.6261 2.1930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278211989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:54 Heat of formation + Delta-G solvation = -1.393968 kcal Electronic energy + Delta-G solvation = -28690.284441 eV Core-core repulsion = 24785.029266 eV Total energy + Delta-G solvation = -3905.255176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.12397 -41.04599 -39.32705 -38.52632 -37.85759 -34.65246 -33.44819 -33.01734 -31.17244 -29.29047 -27.50194 -27.05977 -26.69535 -25.79765 -23.49757 -23.24877 -22.81800 -22.05318 -21.32435 -20.33373 -19.86027 -18.85575 -18.18807 -17.55704 -17.37743 -17.02459 -16.75837 -16.52009 -16.39999 -16.06611 -15.42492 -15.11263 -15.04547 -14.67865 -14.61642 -14.31882 -14.14968 -13.99819 -13.59483 -13.29339 -13.26690 -13.14354 -12.93580 -12.84089 -12.71442 -12.66908 -12.55607 -12.37624 -12.21284 -12.16849 -12.14875 -11.86145 -11.57835 -11.38138 -11.08145 -11.02897 -10.88248 -10.76363 -10.54889 -10.38316 -9.98219 -9.59815 -8.14621 -6.25211 1.48257 1.50807 1.51901 1.58686 1.72752 2.47482 2.62853 2.86455 2.91693 3.15498 3.31499 3.34097 3.48439 3.65506 3.78189 3.92700 3.96956 3.99420 4.06327 4.12908 4.18767 4.24952 4.28346 4.38339 4.41044 4.48171 4.53412 4.57591 4.61756 4.68914 4.71899 4.74957 4.75238 4.79289 4.83572 4.88194 4.93848 4.97922 5.00282 5.01896 5.07738 5.08365 5.09429 5.26297 5.30279 5.40998 5.61251 5.83291 5.91206 5.93578 6.25070 6.82177 6.84388 7.10352 7.44503 8.94876 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.032919 B = 0.001881 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.359291 B =14878.834897 C =15283.958176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.026 3.974 10 C 0.103 3.897 11 N -0.641 5.641 12 C 0.527 3.473 13 O -0.590 6.590 14 C 0.075 3.925 15 H 0.115 0.885 16 C -0.139 4.139 17 C -0.106 4.106 18 C 0.064 3.936 19 C 0.009 3.991 20 N -0.469 5.469 21 C 0.027 3.973 22 C -0.075 4.075 23 C -0.163 4.163 24 C -0.179 4.179 25 C -0.180 4.180 26 C 0.000 4.000 27 O -0.363 6.363 28 C 0.112 3.888 29 H 0.265 0.735 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.692 -17.545 12.663 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.083 0.917 9 C 0.006 3.994 10 C -0.019 4.019 11 N -0.375 5.375 12 C 0.317 3.683 13 O -0.472 6.472 14 C 0.015 3.985 15 H 0.132 0.868 16 C -0.176 4.176 17 C -0.144 4.144 18 C 0.024 3.976 19 C -0.119 4.119 20 N -0.193 5.193 21 C -0.101 4.101 22 C -0.112 4.112 23 C -0.181 4.181 24 C -0.216 4.216 25 C -0.217 4.217 26 C -0.129 4.129 27 O -0.281 6.281 28 C -0.010 4.010 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.192 -18.140 12.509 24.714 hybrid contribution 1.411 0.470 -0.501 1.570 sum -9.780 -17.670 12.007 23.496 Atomic orbital electron populations 1.70030 1.07232 1.27906 1.50036 1.25693 0.95567 1.02280 0.93993 0.85645 0.78367 0.78915 0.78926 1.19948 1.21260 1.19304 1.21154 0.93300 0.90464 1.51887 0.91681 1.20239 0.94502 0.91388 0.93236 1.23286 0.94701 0.92176 0.91731 1.49933 1.42386 1.04871 1.40305 1.20650 0.83227 0.80616 0.83801 1.90621 1.58771 1.41970 1.55826 1.22805 0.95270 0.83748 0.96713 0.86783 1.23268 0.91268 1.02189 1.00919 1.22787 0.98628 0.90850 1.02100 1.23866 0.80938 0.96394 0.96428 1.24372 0.93727 0.96955 0.96875 1.68522 1.37211 1.10389 1.03168 1.22634 1.00090 0.88704 0.98713 1.21004 1.01925 0.93199 0.95114 1.22288 0.99723 0.95612 1.00509 1.23106 0.93401 1.02235 1.02881 1.23031 1.03766 1.03501 0.91428 1.24341 0.96361 0.96918 0.95265 1.88452 1.26457 1.22562 1.90645 1.23502 1.00552 0.76222 1.00740 0.92603 0.94018 0.89747 0.92832 0.87522 0.91493 0.87798 0.87549 0.90864 0.86939 0.90146 0.94490 0.91724 0.91054 0.88046 0.88509 0.88360 0.88285 0.88511 0.88201 0.91490 0.91071 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.09 13.26 21.45 0.28 -47.81 16 2 C 0.03 1.27 5.46 84.65 0.46 1.74 16 3 Si 0.96 39.71 29.54 68.60 2.03 41.73 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.53 -26.11 8.83 25.60 0.23 -25.89 16 8 H 0.07 3.12 7.81 -2.91 -0.02 3.09 16 9 C 0.03 1.17 3.79 -11.14 -0.04 1.13 16 10 C 0.10 4.29 8.17 83.18 0.68 4.97 16 11 N -0.64 -25.62 3.69 -857.49 -3.16 -28.78 16 12 C 0.53 21.25 7.42 87.66 0.65 21.90 16 13 O -0.59 -28.60 17.32 15.46 0.27 -28.33 16 14 C 0.08 2.33 3.70 30.53 0.11 2.44 16 15 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 16 C -0.14 -3.57 6.33 32.16 0.20 -3.37 16 17 C -0.11 -2.11 6.32 31.74 0.20 -1.91 16 18 C 0.06 1.50 1.68 -10.32 -0.02 1.49 16 19 C 0.01 0.18 6.61 86.16 0.57 0.75 16 20 N -0.47 -8.93 6.23 -922.86 -5.75 -14.68 16 21 C 0.03 0.45 4.77 86.30 0.41 0.87 16 22 C -0.07 -1.06 5.56 30.59 0.17 -0.89 16 23 C -0.16 -2.11 5.74 -10.79 -0.06 -2.17 16 24 C -0.18 -2.05 10.18 30.59 0.31 -1.74 16 25 C -0.18 -2.06 10.25 30.60 0.31 -1.74 16 26 C 0.00 0.00 7.41 86.16 0.64 0.64 16 27 O -0.36 -11.68 10.39 -130.51 -1.36 -13.04 16 28 C 0.11 4.39 7.89 83.25 0.66 5.05 16 29 H 0.26 13.34 8.31 -92.70 -0.77 12.57 16 30 H 0.04 2.12 8.11 -2.39 -0.02 2.10 16 31 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.11 2.56 6.96 -2.39 -0.02 2.54 16 34 H 0.07 1.95 8.05 -2.38 -0.02 1.93 16 35 H 0.10 1.85 7.83 -2.39 -0.02 1.83 16 36 H 0.11 1.67 8.01 -2.38 -0.02 1.65 16 37 H 0.07 1.49 7.79 -2.38 -0.02 1.47 16 38 H 0.11 1.75 8.01 -2.39 -0.02 1.73 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.04 0.67 7.70 -2.39 -0.02 0.65 16 41 H 0.06 0.94 7.54 -2.39 -0.02 0.92 16 42 H 0.07 1.04 7.87 -2.38 -0.02 1.02 16 43 H 0.10 1.34 8.08 -2.38 -0.02 1.32 16 44 H 0.10 1.07 8.03 -2.39 -0.02 1.05 16 45 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 47 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.10 2.11 7.98 -2.39 -0.02 2.09 16 49 H 0.07 1.66 7.80 -2.38 -0.02 1.64 16 50 H 0.07 2.65 6.80 -2.39 -0.02 2.63 16 51 H 0.08 3.15 8.10 -2.39 -0.02 3.14 16 Total: -1.00 -61.88 409.58 -1.31 -63.19 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.89 Total: 24.46 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.49 Total: 3.25 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -8.63 Total: -91.26 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.09 Total: -41.37 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -61.88 -1.31 -63.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278211989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.792 kcal (2) G-P(sol) polarization free energy of solvation -61.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds