Wall clock time and date at job start Tue Mar 31 2020 17:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46688 * 2 1 4 4 N 1.46498 * 109.46970 * 120.00129 * 2 1 3 5 5 C 1.34778 * 119.99632 * 274.99838 * 4 2 1 6 6 O 1.21280 * 120.00625 * 4.99277 * 5 4 2 7 7 C 1.50706 * 119.99696 * 184.99307 * 5 4 2 8 8 C 1.50696 * 112.90476 * 315.24870 * 7 5 4 9 9 C 1.38251 * 119.97711 * 282.48157 * 8 7 5 10 10 C 1.38197 * 120.02590 * 179.76943 * 9 8 7 11 11 C 1.38457 * 119.97619 * 0.50974 * 10 9 8 12 12 F 1.35098 * 120.02773 * 179.77082 * 11 10 9 13 13 C 1.38461 * 119.94737 * 359.74625 * 11 10 9 14 14 C 1.38199 * 119.97518 * 359.97438 * 13 11 10 15 15 C 1.53780 * 113.61496 * 183.99963 * 7 5 4 16 16 C 1.53781 * 87.17244 * 270.92488 * 15 7 5 17 17 C 1.53784 * 87.08067 * 334.52595 * 16 15 7 18 18 C 1.52998 * 109.46864 * 240.00352 * 2 1 3 19 19 H 1.09005 * 109.46771 * 299.99682 * 18 2 1 20 20 C 1.53004 * 109.46864 * 179.97438 * 18 2 1 21 21 N 1.46498 * 109.47509 * 60.00107 * 18 2 1 22 22 C 1.36936 * 119.99837 * 204.99989 * 21 18 2 23 23 H 1.07999 * 120.00259 * 359.97438 * 22 21 18 24 24 C 1.38809 * 120.00171 * 179.97438 * 22 21 18 25 25 N 1.31626 * 119.99679 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00459 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46859 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47210 * 120.00341 * 26 24 22 29 29 H 1.48502 * 109.47162 * 240.00269 * 26 24 22 30 30 H 1.08992 * 109.47160 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47311 * 300.00128 * 1 2 3 32 32 H 1.09008 * 109.46925 * 59.99572 * 1 2 3 33 33 H 0.96998 * 119.99845 * 95.00330 * 4 2 1 34 34 H 1.08003 * 119.98289 * 0.02777 * 9 8 7 35 35 H 1.07998 * 120.01160 * 180.25776 * 10 9 8 36 36 H 1.08001 * 120.01479 * 180.02562 * 13 11 10 37 37 H 1.08005 * 119.98874 * 180.02562 * 14 13 11 38 38 H 1.08994 * 113.61641 * 156.33357 * 15 7 5 39 39 H 1.09006 * 113.61516 * 25.51541 * 15 7 5 40 40 H 1.08997 * 113.61272 * 89.07307 * 16 15 7 41 41 H 1.09001 * 113.61305 * 219.89031 * 16 15 7 42 42 H 1.08998 * 113.61388 * 139.97845 * 17 16 15 43 43 H 1.09000 * 113.61284 * 270.80152 * 17 16 15 44 44 H 1.08998 * 109.47311 * 179.97438 * 20 18 2 45 45 H 1.09001 * 109.47317 * 299.99927 * 20 18 2 46 46 H 1.09009 * 109.47233 * 59.99627 * 20 18 2 47 47 H 0.96998 * 119.99845 * 24.99498 * 21 18 2 48 48 H 0.97000 * 120.00183 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.7741 1.1332 2.4357 7 6 2.7544 -0.6971 3.5577 8 6 2.2251 -2.0915 3.7732 9 6 0.9769 -2.2769 4.3380 10 6 0.4885 -3.5551 4.5318 11 6 1.2540 -4.6505 4.1697 12 9 0.7795 -5.9005 4.3629 13 6 2.5062 -4.4637 3.6090 14 6 2.9902 -3.1845 3.4109 15 6 2.7415 0.1698 4.8277 16 6 4.1075 0.7145 4.3780 17 6 4.2913 -0.6037 3.6076 18 6 2.0400 -0.7212 -1.2493 19 1 1.6766 -1.7489 -1.2493 20 6 3.5700 -0.7206 -1.2496 21 7 1.5517 -0.0305 -2.4454 22 6 1.4209 -0.7137 -3.6250 23 1 1.6781 -1.7615 -3.6736 24 6 0.9577 -0.0595 -4.7583 25 7 0.6447 1.2176 -4.6992 26 14 0.7800 -0.9911 -6.3676 27 1 1.1948 -2.4033 -6.1704 28 1 -0.6369 -0.9491 -6.8100 29 1 1.6403 -0.3618 -7.4015 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1525 34 1 0.3816 -1.4223 4.6241 35 1 -0.4884 -3.6996 4.9692 36 1 3.1041 -5.3173 3.3258 37 1 3.9667 -3.0385 2.9732 38 1 2.7843 -0.4077 5.7511 39 1 1.9525 0.9219 4.8351 40 1 4.0375 1.5907 3.7335 41 1 4.8158 0.8462 5.1959 42 1 4.7530 -0.4765 2.6285 43 1 4.7590 -1.3924 4.1970 44 1 3.9334 -1.2348 -2.1394 45 1 3.9330 0.3072 -1.2498 46 1 3.9338 -1.2342 -0.3596 47 1 1.3210 0.9106 -2.4018 48 1 0.3207 1.6748 -5.4910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282176443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:57 Heat of formation + Delta-G solvation = -31.863504 kcal Electronic energy + Delta-G solvation = -29430.478640 eV Core-core repulsion = 25400.441901 eV Total energy + Delta-G solvation = -4030.036739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.13864 -41.21730 -38.96592 -37.73836 -36.34792 -33.95992 -31.91394 -31.50365 -31.04022 -29.50038 -28.41041 -26.21647 -26.04918 -24.01180 -23.21191 -22.98113 -22.11923 -21.23199 -20.11300 -18.99198 -18.03921 -17.44678 -17.28025 -16.52304 -15.99735 -15.83348 -15.75701 -14.96045 -14.81360 -14.66258 -14.33854 -13.89131 -13.74794 -13.62653 -13.57959 -13.32090 -13.07351 -12.90788 -12.72016 -12.45392 -12.41030 -12.12564 -11.82742 -11.65703 -11.37770 -11.19964 -11.14096 -10.96411 -10.85809 -10.76747 -10.68943 -10.52020 -10.20078 -9.92700 -9.84601 -9.65539 -9.42573 -9.03724 -8.79978 -8.73538 -7.00774 -5.79484 -3.09107 0.78712 0.91274 2.65287 3.13861 3.34472 3.41508 3.47504 3.49342 3.96757 4.13658 4.29079 4.38614 4.49139 4.56477 4.59532 4.62987 4.73839 4.95651 5.12444 5.18878 5.33586 5.42054 5.47807 5.49573 5.58230 5.66178 5.66461 5.70305 5.74419 5.80989 5.84006 5.84805 5.88376 5.94301 6.09183 6.16371 6.19397 6.22471 6.37582 6.40894 6.51207 6.55663 6.61931 6.80206 6.94003 7.00460 7.67327 7.68527 8.34619 8.38584 9.49684 10.04770 10.39894 11.42940 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.003159 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.440399 B = 8860.129350 C =10152.961785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.084 0.916 4 N -0.710 5.710 5 C 0.541 3.459 6 O -0.534 6.534 7 C -0.070 4.070 8 C -0.079 4.079 9 C -0.077 4.077 10 C -0.149 4.149 11 C 0.096 3.904 12 F -0.141 7.141 13 C -0.149 4.149 14 C -0.085 4.085 15 C -0.111 4.111 16 C -0.139 4.139 17 C -0.120 4.120 18 C 0.169 3.831 19 H 0.049 0.951 20 C -0.163 4.163 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.071 0.929 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.397 0.603 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.034 0.966 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.926 -8.497 22.896 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 H 0.102 0.898 4 N -0.360 5.360 5 C 0.325 3.675 6 O -0.410 6.410 7 C -0.074 4.074 8 C -0.079 4.079 9 C -0.095 4.095 10 C -0.168 4.168 11 C 0.077 3.923 12 F -0.120 7.120 13 C -0.168 4.168 14 C -0.103 4.103 15 C -0.149 4.149 16 C -0.176 4.176 17 C -0.158 4.158 18 C 0.058 3.942 19 H 0.067 0.933 20 C -0.224 4.224 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.089 0.911 24 C -0.207 4.207 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.231 0.769 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.053 0.947 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.624 -7.822 22.772 24.726 hybrid contribution -0.213 -0.993 -1.020 1.439 sum 5.411 -8.815 21.752 24.086 Atomic orbital electron populations 1.22040 0.94927 1.01725 1.02335 1.21358 0.94546 0.97368 0.83533 0.89804 1.46020 1.66444 1.13861 1.09677 1.19589 0.78270 0.86279 0.83336 1.90699 1.49192 1.17471 1.83678 1.21027 0.97749 0.92324 0.96257 1.19556 0.94835 0.93696 0.99856 1.20884 0.94932 0.96566 0.97104 1.21144 1.00864 0.91695 1.03113 1.17761 0.93916 0.79409 1.01217 1.91505 1.88434 1.38927 1.93088 1.21148 0.95095 0.98736 1.01835 1.20947 1.00128 0.90783 0.98471 1.22838 0.99067 0.98316 0.94667 1.22822 0.97030 0.97499 1.00255 1.23014 0.91986 0.98946 1.01845 1.20387 0.92098 0.95560 0.86150 0.93261 1.22444 0.99075 1.01055 0.99795 1.42291 1.78201 1.10676 1.04810 1.19232 1.36741 0.93894 0.87086 0.91123 1.24733 1.02023 0.95958 0.98033 1.69674 1.50686 1.08629 1.28856 0.86138 0.77325 0.78772 0.84059 1.20586 1.21870 1.21878 0.93172 0.93371 0.90156 0.76919 0.84936 0.84644 0.84526 0.84569 0.89441 0.89778 0.89305 0.91025 0.90552 0.88813 0.92636 0.93413 0.94653 0.78052 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.33 37.16 0.35 -2.31 16 2 C 0.14 2.31 2.17 -67.93 -0.15 2.16 16 3 H 0.08 1.59 7.65 -51.93 -0.40 1.19 16 4 N -0.71 -9.66 4.29 -53.80 -0.23 -9.89 16 5 C 0.54 7.35 6.67 -10.98 -0.07 7.28 16 6 O -0.53 -9.17 15.26 5.56 0.08 -9.08 16 7 C -0.07 -0.69 1.00 -155.86 -0.16 -0.85 16 8 C -0.08 -0.71 4.18 -104.62 -0.44 -1.14 16 9 C -0.08 -0.70 9.38 -39.59 -0.37 -1.07 16 10 C -0.15 -1.34 10.03 -39.52 -0.40 -1.73 16 11 C 0.10 0.92 7.30 -39.42 -0.29 0.63 16 12 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 13 C -0.15 -1.24 10.03 -39.51 -0.40 -1.64 16 14 C -0.09 -0.68 8.85 -39.59 -0.35 -1.03 16 15 C -0.11 -1.02 6.62 -25.92 -0.17 -1.19 16 16 C -0.14 -1.23 7.71 -25.92 -0.20 -1.43 16 17 C -0.12 -0.99 6.21 -25.78 -0.16 -1.15 16 18 C 0.17 3.18 2.52 -67.93 -0.17 3.01 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 C -0.16 -2.81 9.33 37.16 0.35 -2.47 16 21 N -0.72 -17.28 4.43 -53.43 -0.24 -17.52 16 22 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 26 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.08 1.59 7.45 -51.92 -0.39 1.21 16 33 H 0.40 4.71 7.65 -40.82 -0.31 4.40 16 34 H 0.13 1.13 8.02 -52.48 -0.42 0.71 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.14 0.85 7.04 -52.48 -0.37 0.48 16 38 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.08 0.90 7.49 -51.93 -0.39 0.51 16 40 H 0.09 0.97 7.91 -51.93 -0.41 0.56 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.09 0.60 7.47 -51.93 -0.39 0.21 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.03 0.49 7.45 -51.92 -0.39 0.10 16 47 H 0.39 10.01 7.58 -40.82 -0.31 9.70 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 394.84 15.07 5.95 5.95 Total: -1.00 -30.86 394.84 -9.10 -39.96 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -7.53 Total: 11.80 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.87 Total: -9.88 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.26 Total: -54.32 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.86 -9.10 -39.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282176443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.096 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds