Wall clock time and date at job start Tue Mar 31 2020 17:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46688 * 2 1 4 4 N 1.46498 * 109.46970 * 120.00129 * 2 1 3 5 5 C 1.34778 * 119.99632 * 274.99838 * 4 2 1 6 6 O 1.21280 * 120.00625 * 4.99277 * 5 4 2 7 7 C 1.50706 * 119.99696 * 184.99307 * 5 4 2 8 8 C 1.50696 * 112.90476 * 315.24870 * 7 5 4 9 9 C 1.38251 * 119.97711 * 282.48157 * 8 7 5 10 10 C 1.38197 * 120.02590 * 179.76943 * 9 8 7 11 11 C 1.38457 * 119.97619 * 0.50974 * 10 9 8 12 12 F 1.35098 * 120.02773 * 179.77082 * 11 10 9 13 13 C 1.38461 * 119.94737 * 359.74625 * 11 10 9 14 14 C 1.38199 * 119.97518 * 359.97438 * 13 11 10 15 15 C 1.53780 * 113.61496 * 183.99963 * 7 5 4 16 16 C 1.53781 * 87.17244 * 270.92488 * 15 7 5 17 17 C 1.53784 * 87.08067 * 334.52595 * 16 15 7 18 18 C 1.52998 * 109.46864 * 240.00352 * 2 1 3 19 19 H 1.09005 * 109.46771 * 299.99682 * 18 2 1 20 20 C 1.53004 * 109.46864 * 179.97438 * 18 2 1 21 21 N 1.46498 * 109.47509 * 60.00107 * 18 2 1 22 22 C 1.36936 * 119.99837 * 204.99989 * 21 18 2 23 23 H 1.07999 * 120.00259 * 359.97438 * 22 21 18 24 24 C 1.38809 * 120.00171 * 179.97438 * 22 21 18 25 25 N 1.31626 * 119.99679 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00459 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46859 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47210 * 120.00341 * 26 24 22 29 29 H 1.48502 * 109.47162 * 240.00269 * 26 24 22 30 30 H 1.08992 * 109.47160 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47311 * 300.00128 * 1 2 3 32 32 H 1.09008 * 109.46925 * 59.99572 * 1 2 3 33 33 H 0.96998 * 119.99845 * 95.00330 * 4 2 1 34 34 H 1.08003 * 119.98289 * 0.02777 * 9 8 7 35 35 H 1.07998 * 120.01160 * 180.25776 * 10 9 8 36 36 H 1.08001 * 120.01479 * 180.02562 * 13 11 10 37 37 H 1.08005 * 119.98874 * 180.02562 * 14 13 11 38 38 H 1.08994 * 113.61641 * 156.33357 * 15 7 5 39 39 H 1.09006 * 113.61516 * 25.51541 * 15 7 5 40 40 H 1.08997 * 113.61272 * 89.07307 * 16 15 7 41 41 H 1.09001 * 113.61305 * 219.89031 * 16 15 7 42 42 H 1.08998 * 113.61388 * 139.97845 * 17 16 15 43 43 H 1.09000 * 113.61284 * 270.80152 * 17 16 15 44 44 H 1.08998 * 109.47311 * 179.97438 * 20 18 2 45 45 H 1.09001 * 109.47317 * 299.99927 * 20 18 2 46 46 H 1.09009 * 109.47233 * 59.99627 * 20 18 2 47 47 H 0.96998 * 119.99845 * 24.99498 * 21 18 2 48 48 H 0.97000 * 120.00183 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.7741 1.1332 2.4357 7 6 2.7544 -0.6971 3.5577 8 6 2.2251 -2.0915 3.7732 9 6 0.9769 -2.2769 4.3380 10 6 0.4885 -3.5551 4.5318 11 6 1.2540 -4.6505 4.1697 12 9 0.7795 -5.9005 4.3629 13 6 2.5062 -4.4637 3.6090 14 6 2.9902 -3.1845 3.4109 15 6 2.7415 0.1698 4.8277 16 6 4.1075 0.7145 4.3780 17 6 4.2913 -0.6037 3.6076 18 6 2.0400 -0.7212 -1.2493 19 1 1.6766 -1.7489 -1.2493 20 6 3.5700 -0.7206 -1.2496 21 7 1.5517 -0.0305 -2.4454 22 6 1.4209 -0.7137 -3.6250 23 1 1.6781 -1.7615 -3.6736 24 6 0.9577 -0.0595 -4.7583 25 7 0.6447 1.2176 -4.6992 26 14 0.7800 -0.9911 -6.3676 27 1 1.1948 -2.4033 -6.1704 28 1 -0.6369 -0.9491 -6.8100 29 1 1.6403 -0.3618 -7.4015 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1525 34 1 0.3816 -1.4223 4.6241 35 1 -0.4884 -3.6996 4.9692 36 1 3.1041 -5.3173 3.3258 37 1 3.9667 -3.0385 2.9732 38 1 2.7843 -0.4077 5.7511 39 1 1.9525 0.9219 4.8351 40 1 4.0375 1.5907 3.7335 41 1 4.8158 0.8462 5.1959 42 1 4.7530 -0.4765 2.6285 43 1 4.7590 -1.3924 4.1970 44 1 3.9334 -1.2348 -2.1394 45 1 3.9330 0.3072 -1.2498 46 1 3.9338 -1.2342 -0.3596 47 1 1.3210 0.9106 -2.4018 48 1 0.3207 1.6748 -5.4910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282176443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:56 Heat of formation + Delta-G solvation = -48.772942 kcal Electronic energy + Delta-G solvation = -29431.211888 eV Core-core repulsion = 25400.441901 eV Total energy + Delta-G solvation = -4030.769987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.87806 -42.10723 -39.91266 -38.77582 -37.62703 -35.59320 -33.58390 -32.13752 -31.95626 -30.88489 -30.13812 -27.04518 -26.76580 -25.91728 -24.46039 -23.72051 -22.95069 -22.28217 -21.54388 -20.08153 -19.32005 -18.72283 -18.17933 -17.26210 -17.11234 -16.83463 -16.56207 -16.50774 -15.97926 -15.73529 -15.37042 -15.23767 -15.05944 -14.75221 -14.52916 -14.45704 -14.29243 -14.07745 -13.63973 -13.50252 -13.43705 -13.21592 -13.05773 -12.95171 -12.76228 -12.74454 -12.59270 -12.27154 -12.09569 -12.01894 -11.89980 -11.73058 -11.49455 -11.44239 -11.23050 -10.99635 -10.84730 -10.09708 -10.05405 -9.51291 -9.01061 -7.91949 -5.20814 0.09714 0.28290 1.49143 1.49437 1.58314 1.59174 2.08685 2.57002 2.61707 3.29736 3.40949 3.42612 3.56342 3.66493 3.70154 3.82992 3.86003 3.98019 3.99497 4.04643 4.20234 4.34033 4.35180 4.47097 4.50891 4.58264 4.77805 4.81638 4.84908 4.88032 4.94584 4.97638 5.00483 5.04206 5.05561 5.09975 5.16282 5.18256 5.18940 5.27615 5.29472 5.49905 5.50998 5.51722 5.52565 5.59879 5.90802 6.29066 6.57355 7.25366 7.35607 8.08768 8.32123 9.31754 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.003159 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.440399 B = 8860.129350 C =10152.961785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.152 3.848 3 H 0.061 0.939 4 N -0.700 5.700 5 C 0.539 3.461 6 O -0.574 6.574 7 C -0.065 4.065 8 C -0.083 4.083 9 C -0.084 4.084 10 C -0.154 4.154 11 C 0.079 3.921 12 F -0.150 7.150 13 C -0.147 4.147 14 C -0.078 4.078 15 C -0.109 4.109 16 C -0.142 4.142 17 C -0.109 4.109 18 C 0.168 3.832 19 H 0.056 0.944 20 C -0.153 4.153 21 N -0.730 5.730 22 C -0.232 4.232 23 H 0.080 0.920 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.969 3.031 27 H -0.264 1.264 28 H -0.297 1.297 29 H -0.297 1.297 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.409 0.591 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.110 0.890 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.043 0.957 45 H 0.034 0.966 46 H 0.075 0.925 47 H 0.372 0.628 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.675 -11.008 24.249 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 H 0.079 0.921 4 N -0.351 5.351 5 C 0.326 3.674 6 O -0.453 6.453 7 C -0.069 4.069 8 C -0.083 4.083 9 C -0.103 4.103 10 C -0.173 4.173 11 C 0.060 3.940 12 F -0.129 7.129 13 C -0.166 4.166 14 C -0.096 4.096 15 C -0.147 4.147 16 C -0.179 4.179 17 C -0.146 4.146 18 C 0.059 3.941 19 H 0.074 0.926 20 C -0.213 4.213 21 N -0.371 5.371 22 C -0.363 4.363 23 H 0.098 0.902 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.799 3.201 27 H -0.188 1.188 28 H -0.225 1.225 29 H -0.224 1.224 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.246 0.754 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.142 0.858 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.093 0.907 47 H 0.204 0.796 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.405 -10.400 24.169 27.334 hybrid contribution -0.765 -0.219 -1.322 1.543 sum 6.640 -10.619 22.847 26.054 Atomic orbital electron populations 1.21917 0.95484 1.01806 1.00894 1.20900 0.93928 0.96276 0.84288 0.92120 1.45812 1.66310 1.14289 1.08709 1.20280 0.77305 0.85815 0.84004 1.90691 1.50749 1.19470 1.84367 1.20897 0.98960 0.92556 0.94442 1.19511 0.94993 0.93358 1.00442 1.20954 0.95248 0.96607 0.97447 1.21263 1.01353 0.91576 1.03114 1.18028 0.94763 0.79135 1.02065 1.91482 1.88661 1.39512 1.93271 1.21384 0.94619 0.99606 1.00990 1.21167 1.00804 0.90017 0.97623 1.22881 0.98528 0.97946 0.95307 1.22794 0.97447 0.97002 1.00666 1.23081 0.90258 0.99174 1.02131 1.20556 0.93215 0.95347 0.84983 0.92561 1.22285 0.97172 1.00672 1.01164 1.42470 1.78492 1.10215 1.05892 1.19617 1.34593 0.94241 0.87884 0.90233 1.25503 1.03072 0.96786 1.01330 1.69833 1.52721 1.10271 1.29276 0.85132 0.76581 0.78340 0.80070 1.18789 1.22453 1.22413 0.92217 0.93340 0.93021 0.75413 0.85035 0.83831 0.82740 0.82177 0.87127 0.92015 0.92042 0.88882 0.90751 0.85789 0.93797 0.94694 0.90650 0.79642 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.33 71.98 0.67 -4.38 16 2 C 0.15 5.11 2.17 44.99 0.10 5.21 16 3 H 0.06 2.36 7.65 -2.38 -0.02 2.35 16 4 N -0.70 -17.95 4.29 -442.52 -1.90 -19.85 16 5 C 0.54 14.12 6.67 87.66 0.59 14.71 16 6 O -0.57 -19.99 15.26 -3.03 -0.05 -20.03 16 7 C -0.07 -1.14 1.00 -53.06 -0.05 -1.19 16 8 C -0.08 -1.24 4.18 -19.86 -0.08 -1.33 16 9 C -0.08 -1.37 9.38 22.26 0.21 -1.17 16 10 C -0.15 -2.50 10.03 22.31 0.22 -2.28 16 11 C 0.08 1.35 7.30 22.38 0.16 1.51 16 12 F -0.15 -2.96 17.27 44.97 0.78 -2.18 16 13 C -0.15 -1.96 10.03 22.31 0.22 -1.74 16 14 C -0.08 -0.93 8.85 22.26 0.20 -0.73 16 15 C -0.11 -1.80 6.62 31.12 0.21 -1.60 16 16 C -0.14 -2.24 7.71 31.12 0.24 -2.00 16 17 C -0.11 -1.42 6.21 31.21 0.19 -1.22 16 18 C 0.17 6.18 2.52 44.99 0.11 6.30 16 19 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 20 C -0.15 -4.99 9.33 71.98 0.67 -4.32 16 21 N -0.73 -35.47 4.43 -322.94 -1.43 -36.90 16 22 C -0.23 -12.38 9.93 84.03 0.83 -11.54 16 23 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 24 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 25 N -0.97 -59.08 13.06 21.65 0.28 -58.79 16 26 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 27 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 29 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.05 2.12 7.45 -2.38 -0.02 2.11 16 33 H 0.41 8.51 7.65 -92.71 -0.71 7.80 16 34 H 0.13 2.11 8.02 -2.91 -0.02 2.09 16 35 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.16 1.13 7.04 -2.91 -0.02 1.11 16 38 H 0.11 1.33 8.09 -2.39 -0.02 1.31 16 39 H 0.06 1.31 7.49 -2.38 -0.02 1.30 16 40 H 0.06 1.32 7.91 -2.39 -0.02 1.30 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 43 H 0.12 0.93 7.47 -2.39 -0.02 0.91 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 1.83 7.45 -2.38 -0.02 1.81 16 47 H 0.37 19.96 7.58 -92.71 -0.70 19.25 16 48 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -68.32 394.84 4.23 -64.09 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.44 Total: 35.63 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 4.96 Total: -9.52 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -3.05 Total: -115.54 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.32 4.23 -64.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282176443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.317 kcal (2) G-P(sol) polarization free energy of solvation -68.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds