Wall clock time and date at job start Tue Mar 31 2020 17:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47138 * 2 1 4 4 C 1.52994 * 109.47636 * 120.00258 * 2 1 3 5 5 C 1.50706 * 109.47222 * 295.00047 * 4 2 1 6 6 C 1.38268 * 119.98664 * 89.99738 * 5 4 2 7 7 C 1.38219 * 120.05169 * 179.97438 * 6 5 4 8 8 C 1.38221 * 120.02634 * 359.97438 * 7 6 5 9 9 C 1.38434 * 119.97149 * 0.02562 * 8 7 6 10 10 F 1.35106 * 120.02331 * 179.97438 * 9 8 7 11 11 C 1.38174 * 119.98933 * 269.72627 * 5 4 2 12 12 C 1.50698 * 109.47331 * 240.00333 * 2 1 3 13 13 O 1.21282 * 120.00542 * 239.99526 * 12 2 1 14 14 N 1.34789 * 119.99826 * 59.99546 * 12 2 1 15 15 C 1.46497 * 119.99766 * 180.02562 * 14 12 2 16 16 C 1.52995 * 109.47081 * 180.02562 * 15 14 12 17 17 H 1.09000 * 112.85036 * 43.79694 * 16 15 14 18 18 C 1.53782 * 113.61925 * 175.00094 * 16 15 14 19 19 C 1.53778 * 87.08298 * 140.06182 * 18 16 15 20 20 H 1.09000 * 113.61077 * 219.93482 * 19 18 16 21 21 N 1.46499 * 113.61243 * 89.11840 * 19 18 16 22 22 C 1.36939 * 119.99547 * 156.52902 * 21 19 18 23 23 H 1.07993 * 120.00716 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99459 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00154 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99635 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99668 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99848 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99841 * 26 24 22 30 30 C 1.53781 * 87.17268 * 334.52770 * 19 18 16 31 31 H 1.09000 * 109.46750 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46661 * 299.99294 * 1 2 3 33 33 H 1.08992 * 109.47201 * 59.99715 * 1 2 3 34 34 H 1.08995 * 109.47095 * 54.99896 * 4 2 1 35 35 H 1.09002 * 109.47644 * 175.00285 * 4 2 1 36 36 H 1.08001 * 119.97403 * 359.97438 * 6 5 4 37 37 H 1.08002 * 119.98353 * 180.02562 * 7 6 5 38 38 H 1.08000 * 120.01325 * 180.02562 * 8 7 6 39 39 H 1.08001 * 120.00893 * 359.97438 * 11 5 4 40 40 H 0.96998 * 119.99736 * 0.02562 * 14 12 2 41 41 H 1.09000 * 109.47582 * 59.99753 * 15 14 12 42 42 H 1.09005 * 109.47453 * 300.00004 * 15 14 12 43 43 H 1.08999 * 113.61123 * 25.51174 * 18 16 15 44 44 H 1.09001 * 113.68652 * 254.62723 * 18 16 15 45 45 H 0.96998 * 120.00185 * 336.52285 * 21 19 18 46 46 H 0.96993 * 120.00007 * 0.02562 * 25 24 22 47 47 H 1.09001 * 113.61190 * 140.02572 * 30 19 18 48 48 H 1.09003 * 113.60863 * 270.92148 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6415 0.0570 2.4766 6 6 0.4354 -0.2054 3.0997 7 6 0.0687 0.5072 4.2259 8 6 0.9077 1.4827 4.7307 9 6 2.1155 1.7462 4.1077 10 9 2.9362 2.6999 4.6000 11 6 2.4839 1.0285 2.9821 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4547 15 6 2.1946 -0.9406 -3.6508 16 6 1.6852 -0.2190 -4.9000 17 1 1.7707 0.8652 -4.8269 18 6 2.2414 -0.7937 -6.2135 19 6 0.8370 -0.5896 -6.8059 20 1 0.5149 -1.4032 -7.4557 21 7 0.6405 0.7314 -7.4080 22 6 -0.3209 0.9107 -8.3666 23 1 -0.9338 0.0782 -8.6790 24 6 -0.5075 2.1625 -8.9367 25 7 0.2392 3.1772 -8.5556 26 14 -1.8183 2.4069 -10.2449 27 1 -1.2316 2.1579 -11.5862 28 1 -2.3298 3.7995 -10.1791 29 1 -2.9357 1.4576 -10.0095 30 6 0.2984 -0.6982 -5.3695 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5137 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 1.6055 -1.7198 1.2950 35 1 3.1264 -0.7994 1.2055 36 1 -0.2207 -0.9677 2.7062 37 1 -0.8735 0.3010 4.7120 38 1 0.6212 2.0390 5.6109 39 1 3.4281 1.2300 2.4980 40 1 1.1493 0.5390 -2.5435 41 1 1.8310 -1.9682 -3.6507 42 1 3.2846 -0.9410 -3.6510 43 1 2.5370 -1.8403 -6.1414 44 1 3.0055 -0.1689 -6.6759 45 1 1.1912 1.4791 -7.1276 46 1 0.9201 3.0502 -7.8766 47 1 -0.5054 0.0046 -5.1504 48 1 0.0638 -1.7189 -5.0674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316640723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:46 Heat of formation + Delta-G solvation = -44.767823 kcal Electronic energy + Delta-G solvation = -27433.198642 eV Core-core repulsion = 23402.602330 eV Total energy + Delta-G solvation = -4030.596312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.24055 -40.38781 -39.44400 -38.62023 -35.27207 -34.80775 -33.54040 -31.60807 -30.80100 -29.92939 -27.45453 -27.12821 -25.19131 -24.19854 -23.44196 -22.98707 -22.00449 -21.48841 -20.06959 -18.59625 -17.82690 -17.50683 -16.98536 -16.72543 -16.56411 -16.17752 -15.92305 -15.63135 -15.06985 -14.83661 -14.52474 -14.29172 -13.92209 -13.85301 -13.69120 -13.61257 -13.33050 -13.15811 -12.95550 -12.53691 -12.44617 -12.24905 -12.07188 -12.05123 -11.52433 -11.51231 -11.41469 -11.30393 -10.96936 -10.78484 -10.39075 -10.18930 -10.03349 -9.84737 -9.68673 -9.35508 -9.21057 -9.06582 -9.05082 -8.91982 -7.11154 -6.17182 -3.17709 0.73082 0.78014 2.53547 3.02057 3.22922 3.48361 3.52804 3.66808 3.83404 4.22356 4.33272 4.46400 4.58049 4.60670 4.64354 4.70332 4.80935 4.92069 4.94013 4.95470 5.06125 5.14442 5.29590 5.37367 5.42042 5.42991 5.48995 5.51218 5.55795 5.64945 5.70649 5.76598 5.80833 5.81629 5.86770 5.89270 5.95027 6.10003 6.12216 6.23313 6.33496 6.47582 6.48359 6.61316 6.75517 6.90623 7.42933 7.77523 8.12553 8.68447 9.15391 10.01567 10.15949 11.30857 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.001834 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.417693 B =15263.159976 C =16010.403209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.063 4.063 5 C -0.048 4.048 6 C -0.125 4.125 7 C -0.089 4.089 8 C -0.160 4.160 9 C 0.100 3.900 10 F -0.141 7.141 11 C -0.151 4.151 12 C 0.515 3.485 13 O -0.546 6.546 14 N -0.723 5.723 15 C 0.131 3.869 16 C -0.119 4.119 17 H 0.090 0.910 18 C -0.148 4.148 19 C 0.172 3.828 20 H 0.063 0.937 21 N -0.717 5.717 22 C -0.334 4.334 23 H 0.067 0.933 24 C -0.045 4.045 25 N -0.943 5.943 26 Si 1.083 2.917 27 H -0.295 1.295 28 H -0.288 1.288 29 H -0.294 1.294 30 C -0.167 4.167 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.402 0.598 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.368 0.632 46 H 0.255 0.745 47 H 0.066 0.934 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -6.726 26.141 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 H 0.117 0.883 4 C -0.101 4.101 5 C -0.049 4.049 6 C -0.143 4.143 7 C -0.107 4.107 8 C -0.179 4.179 9 C 0.081 3.919 10 F -0.119 7.119 11 C -0.170 4.170 12 C 0.301 3.699 13 O -0.424 6.424 14 N -0.374 5.374 15 C 0.008 3.992 16 C -0.138 4.138 17 H 0.108 0.892 18 C -0.188 4.188 19 C 0.060 3.940 20 H 0.081 0.919 21 N -0.357 5.357 22 C -0.465 4.465 23 H 0.085 0.915 24 C -0.242 4.242 25 N -0.588 5.588 26 Si 0.914 3.086 27 H -0.222 1.222 28 H -0.214 1.214 29 H -0.221 1.221 30 C -0.208 4.208 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.237 0.763 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.201 0.799 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.027 -6.440 25.081 25.915 hybrid contribution 0.801 -0.258 1.261 1.516 sum 1.828 -6.698 26.342 27.241 Atomic orbital electron populations 1.21888 0.92570 1.02980 1.03201 1.21272 0.98006 1.00935 0.92500 0.88312 1.20446 1.02574 0.98150 0.88933 1.19746 0.93715 0.95187 0.96204 1.21196 0.96455 1.00679 0.96018 1.21028 0.99266 0.94659 0.95753 1.21162 0.93918 1.00867 1.01930 1.17717 0.89735 0.89496 0.94999 1.91512 1.71567 1.61712 1.87143 1.21089 1.01722 0.97680 0.96514 1.20554 0.80069 0.84572 0.84701 1.90695 1.38219 1.26494 1.86944 1.46087 1.53433 1.32129 1.05715 1.21463 0.98760 0.96080 0.82936 1.22748 0.98503 0.99921 0.92649 0.89170 1.23435 0.99435 1.00491 0.95399 1.20985 0.92243 0.89435 0.91356 0.91940 1.42174 1.42373 1.05142 1.46042 1.20114 1.12818 0.97526 1.16002 0.91528 1.25814 1.03675 0.91564 1.03180 1.70862 1.23192 1.31775 1.32968 0.83185 0.74711 0.75546 0.75147 1.22247 1.21362 1.22096 1.23914 0.95619 0.99950 1.01311 0.91848 0.91022 0.91725 0.89676 0.89672 0.85133 0.84940 0.84868 0.84683 0.76338 0.91538 0.91846 0.90273 0.91487 0.79885 0.93400 0.91554 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.66 37.16 0.32 -0.74 16 2 C -0.11 -0.89 2.71 -91.78 -0.25 -1.13 16 3 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.06 -0.52 4.19 -27.88 -0.12 -0.64 16 5 C -0.05 -0.36 4.71 -104.63 -0.49 -0.86 16 6 C -0.13 -0.81 7.96 -39.58 -0.32 -1.13 16 7 C -0.09 -0.54 10.04 -39.59 -0.40 -0.93 16 8 C -0.16 -1.13 10.03 -39.52 -0.40 -1.53 16 9 C 0.10 0.86 7.30 -39.42 -0.29 0.57 16 10 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 11 C -0.15 -1.24 9.68 -39.52 -0.38 -1.62 16 12 C 0.52 6.03 7.15 -10.98 -0.08 5.95 16 13 O -0.55 -8.33 15.92 5.56 0.09 -8.25 16 14 N -0.72 -8.17 5.45 -60.29 -0.33 -8.49 16 15 C 0.13 1.67 5.51 -4.05 -0.02 1.65 16 16 C -0.12 -1.71 3.64 -89.67 -0.33 -2.04 16 17 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 18 C -0.15 -2.31 7.38 -25.92 -0.19 -2.50 16 19 C 0.17 3.31 4.55 -67.12 -0.31 3.01 16 20 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 21 N -0.72 -17.38 5.31 -52.64 -0.28 -17.66 16 22 C -0.33 -9.19 9.97 -15.06 -0.15 -9.34 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 25 N -0.94 -28.61 13.70 55.49 0.76 -27.85 16 26 Si 1.08 25.52 29.92 -169.99 -5.09 20.44 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 30 C -0.17 -2.70 7.45 -25.78 -0.19 -2.89 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.45 6.27 -51.93 -0.33 0.13 16 33 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 34 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 36 H 0.13 0.66 8.04 -52.49 -0.42 0.24 16 37 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.40 3.94 7.89 -40.82 -0.32 3.62 16 41 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.37 9.15 6.73 -40.82 -0.27 8.87 16 46 H 0.25 7.58 6.77 -40.82 -0.28 7.30 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -32.69 397.40 -10.01 -42.70 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.52 Total: 10.02 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -3.68 Total: -15.54 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.15 Total: -54.01 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.09 Total: 20.44 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.69 -10.01 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316640723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.071 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds