Wall clock time and date at job start Tue Mar 31 2020 17:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47138 * 2 1 4 4 C 1.52994 * 109.47636 * 120.00258 * 2 1 3 5 5 C 1.50706 * 109.47222 * 295.00047 * 4 2 1 6 6 C 1.38268 * 119.98664 * 89.99738 * 5 4 2 7 7 C 1.38219 * 120.05169 * 179.97438 * 6 5 4 8 8 C 1.38221 * 120.02634 * 359.97438 * 7 6 5 9 9 C 1.38434 * 119.97149 * 0.02562 * 8 7 6 10 10 F 1.35106 * 120.02331 * 179.97438 * 9 8 7 11 11 C 1.38174 * 119.98933 * 269.72627 * 5 4 2 12 12 C 1.50698 * 109.47331 * 240.00333 * 2 1 3 13 13 O 1.21282 * 120.00542 * 239.99526 * 12 2 1 14 14 N 1.34789 * 119.99826 * 59.99546 * 12 2 1 15 15 C 1.46497 * 119.99766 * 180.02562 * 14 12 2 16 16 C 1.52995 * 109.47081 * 180.02562 * 15 14 12 17 17 H 1.09000 * 112.85036 * 43.79694 * 16 15 14 18 18 C 1.53782 * 113.61925 * 175.00094 * 16 15 14 19 19 C 1.53778 * 87.08298 * 140.06182 * 18 16 15 20 20 H 1.09000 * 113.61077 * 219.93482 * 19 18 16 21 21 N 1.46499 * 113.61243 * 89.11840 * 19 18 16 22 22 C 1.36939 * 119.99547 * 156.52902 * 21 19 18 23 23 H 1.07993 * 120.00716 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99459 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00154 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99635 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99668 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99848 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99841 * 26 24 22 30 30 C 1.53781 * 87.17268 * 334.52770 * 19 18 16 31 31 H 1.09000 * 109.46750 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46661 * 299.99294 * 1 2 3 33 33 H 1.08992 * 109.47201 * 59.99715 * 1 2 3 34 34 H 1.08995 * 109.47095 * 54.99896 * 4 2 1 35 35 H 1.09002 * 109.47644 * 175.00285 * 4 2 1 36 36 H 1.08001 * 119.97403 * 359.97438 * 6 5 4 37 37 H 1.08002 * 119.98353 * 180.02562 * 7 6 5 38 38 H 1.08000 * 120.01325 * 180.02562 * 8 7 6 39 39 H 1.08001 * 120.00893 * 359.97438 * 11 5 4 40 40 H 0.96998 * 119.99736 * 0.02562 * 14 12 2 41 41 H 1.09000 * 109.47582 * 59.99753 * 15 14 12 42 42 H 1.09005 * 109.47453 * 300.00004 * 15 14 12 43 43 H 1.08999 * 113.61123 * 25.51174 * 18 16 15 44 44 H 1.09001 * 113.68652 * 254.62723 * 18 16 15 45 45 H 0.96998 * 120.00185 * 336.52285 * 21 19 18 46 46 H 0.96993 * 120.00007 * 0.02562 * 25 24 22 47 47 H 1.09001 * 113.61190 * 140.02572 * 30 19 18 48 48 H 1.09003 * 113.60863 * 270.92148 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6415 0.0570 2.4766 6 6 0.4354 -0.2054 3.0997 7 6 0.0687 0.5072 4.2259 8 6 0.9077 1.4827 4.7307 9 6 2.1155 1.7462 4.1077 10 9 2.9362 2.6999 4.6000 11 6 2.4839 1.0285 2.9821 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4547 15 6 2.1946 -0.9406 -3.6508 16 6 1.6852 -0.2190 -4.9000 17 1 1.7707 0.8652 -4.8269 18 6 2.2414 -0.7937 -6.2135 19 6 0.8370 -0.5896 -6.8059 20 1 0.5149 -1.4032 -7.4557 21 7 0.6405 0.7314 -7.4080 22 6 -0.3209 0.9107 -8.3666 23 1 -0.9338 0.0782 -8.6790 24 6 -0.5075 2.1625 -8.9367 25 7 0.2392 3.1772 -8.5556 26 14 -1.8183 2.4069 -10.2449 27 1 -1.2316 2.1579 -11.5862 28 1 -2.3298 3.7995 -10.1791 29 1 -2.9357 1.4576 -10.0095 30 6 0.2984 -0.6982 -5.3695 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5137 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 1.6055 -1.7198 1.2950 35 1 3.1264 -0.7994 1.2055 36 1 -0.2207 -0.9677 2.7062 37 1 -0.8735 0.3010 4.7120 38 1 0.6212 2.0390 5.6109 39 1 3.4281 1.2300 2.4980 40 1 1.1493 0.5390 -2.5435 41 1 1.8310 -1.9682 -3.6507 42 1 3.2846 -0.9410 -3.6510 43 1 2.5370 -1.8403 -6.1414 44 1 3.0055 -0.1689 -6.6759 45 1 1.1912 1.4791 -7.1276 46 1 0.9201 3.0502 -7.8766 47 1 -0.5054 0.0046 -5.1504 48 1 0.0638 -1.7189 -5.0674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316640723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:45 Heat of formation + Delta-G solvation = -63.320660 kcal Electronic energy + Delta-G solvation = -27434.003153 eV Core-core repulsion = 23402.602330 eV Total energy + Delta-G solvation = -4031.400823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.91044 -41.26517 -40.30048 -39.78332 -36.28641 -35.90464 -35.16122 -32.30435 -31.75224 -31.27827 -28.65249 -27.78700 -26.53882 -25.67504 -24.76547 -23.59820 -23.15249 -22.25911 -20.99001 -20.01357 -19.40114 -18.48891 -17.88945 -17.32556 -17.22777 -17.07341 -16.78483 -16.61870 -16.47050 -16.19078 -15.61118 -15.32204 -15.15497 -15.04228 -14.78829 -14.47055 -14.37574 -13.89916 -13.79872 -13.55408 -13.40620 -13.14530 -13.03973 -12.94238 -12.80917 -12.60401 -12.53363 -12.14343 -12.05130 -11.93044 -11.89025 -11.77931 -11.58772 -11.36414 -11.03292 -10.89313 -10.69694 -10.08065 -9.91434 -9.61788 -9.11421 -8.39937 -5.34010 0.17433 0.24425 1.59051 1.61241 1.69112 1.83362 2.17144 2.63198 2.70471 3.24526 3.37958 3.53427 3.59021 3.69125 3.76979 3.80046 3.81737 3.98734 4.01903 4.03809 4.18398 4.22694 4.28543 4.31462 4.37710 4.44596 4.64619 4.69119 4.74763 4.80485 4.84411 4.84955 4.89993 4.98105 5.02076 5.12194 5.13564 5.19433 5.20993 5.26277 5.27722 5.38479 5.47993 5.50492 5.56746 5.66441 5.94898 6.49012 6.51847 7.09294 7.20548 7.99871 8.10445 9.11836 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.001834 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.417693 B =15263.159976 C =16010.403209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.109 0.891 4 C -0.057 4.057 5 C -0.053 4.053 6 C -0.123 4.123 7 C -0.085 4.085 8 C -0.162 4.162 9 C 0.076 3.924 10 F -0.154 7.154 11 C -0.162 4.162 12 C 0.515 3.485 13 O -0.583 6.583 14 N -0.719 5.719 15 C 0.140 3.860 16 C -0.100 4.100 17 H 0.080 0.920 18 C -0.135 4.135 19 C 0.146 3.854 20 H 0.055 0.945 21 N -0.732 5.732 22 C -0.331 4.331 23 H 0.067 0.933 24 C -0.105 4.105 25 N -0.975 5.975 26 Si 1.130 2.870 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.273 1.273 30 C -0.150 4.150 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.134 0.866 40 H 0.411 0.589 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.056 0.944 45 H 0.361 0.639 46 H 0.244 0.756 47 H 0.047 0.953 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.079 -7.844 27.267 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.127 0.873 4 C -0.095 4.095 5 C -0.053 4.053 6 C -0.141 4.141 7 C -0.103 4.103 8 C -0.180 4.180 9 C 0.057 3.943 10 F -0.132 7.132 11 C -0.181 4.181 12 C 0.302 3.698 13 O -0.463 6.463 14 N -0.370 5.370 15 C 0.016 3.984 16 C -0.119 4.119 17 H 0.098 0.902 18 C -0.174 4.174 19 C 0.036 3.964 20 H 0.074 0.926 21 N -0.372 5.372 22 C -0.462 4.462 23 H 0.085 0.915 24 C -0.296 4.296 25 N -0.623 5.623 26 Si 0.955 3.045 27 H -0.213 1.213 28 H -0.220 1.220 29 H -0.198 1.198 30 C -0.191 4.191 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.167 0.833 37 H 0.179 0.821 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.247 0.753 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.075 0.925 45 H 0.193 0.807 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.405 -7.600 26.235 27.316 hybrid contribution 1.264 -0.012 0.949 1.581 sum 0.859 -7.612 27.184 28.242 Atomic orbital electron populations 1.21883 0.91216 1.03254 1.03903 1.21261 0.98956 1.00881 0.90824 0.87314 1.20346 1.01718 0.98194 0.89231 1.19684 0.94287 0.95154 0.96167 1.21455 0.96043 1.00748 0.95892 1.21362 0.99970 0.93647 0.95341 1.21431 0.93313 1.01087 1.02216 1.17987 0.90550 0.90006 0.95803 1.91474 1.72096 1.62303 1.87368 1.21163 1.02028 0.98126 0.96738 1.21095 0.79210 0.84059 0.85407 1.90680 1.39917 1.28266 1.87449 1.46049 1.53315 1.32247 1.05368 1.21260 0.98571 0.95886 0.82645 1.22519 0.96967 0.99403 0.93030 0.90179 1.23341 0.96854 1.02068 0.95130 1.21334 0.95475 0.87012 0.92569 0.92647 1.42301 1.41901 1.06817 1.46167 1.20437 1.12688 0.97336 1.15775 0.91517 1.27183 1.05432 0.91690 1.05324 1.70967 1.24452 1.32768 1.34159 0.82589 0.73182 0.75516 0.73255 1.21295 1.21988 1.19799 1.23725 0.95866 1.00921 0.98575 0.91774 0.89810 0.91545 0.89796 0.91030 0.83341 0.82147 0.83438 0.84836 0.75348 0.91402 0.92030 0.87539 0.92483 0.80678 0.94513 0.93370 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.66 71.98 0.62 -1.12 16 2 C -0.10 -1.50 2.71 -11.54 -0.03 -1.53 16 3 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 4 C -0.06 -0.88 4.19 29.85 0.13 -0.76 16 5 C -0.05 -0.73 4.71 -19.87 -0.09 -0.82 16 6 C -0.12 -1.30 7.96 22.27 0.18 -1.12 16 7 C -0.09 -0.80 10.04 22.26 0.22 -0.57 16 8 C -0.16 -2.02 10.03 22.31 0.22 -1.80 16 9 C 0.08 1.27 7.30 22.37 0.16 1.43 16 10 F -0.15 -3.05 17.27 44.97 0.78 -2.28 16 11 C -0.16 -2.59 9.68 22.31 0.22 -2.37 16 12 C 0.51 11.42 7.15 87.65 0.63 12.05 16 13 O -0.58 -17.36 15.92 -3.04 -0.05 -17.40 16 14 N -0.72 -15.13 5.45 -463.05 -2.52 -17.66 16 15 C 0.14 3.33 5.51 86.38 0.48 3.81 16 16 C -0.10 -2.73 3.64 -10.18 -0.04 -2.77 16 17 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 18 C -0.13 -4.02 7.38 31.12 0.23 -3.79 16 19 C 0.15 5.53 4.55 45.52 0.21 5.73 16 20 H 0.06 2.15 8.11 -2.39 -0.02 2.13 16 21 N -0.73 -35.77 5.31 -320.45 -1.70 -37.47 16 22 C -0.33 -18.29 9.97 84.03 0.84 -17.45 16 23 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 24 C -0.11 -6.02 5.50 84.86 0.47 -5.56 16 25 N -0.98 -60.20 13.70 21.65 0.30 -59.91 16 26 Si 1.13 51.30 29.92 68.60 2.05 53.36 16 27 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 29 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 30 C -0.15 -4.64 7.45 31.21 0.23 -4.41 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.83 6.27 -2.39 -0.01 0.81 16 33 H 0.07 0.79 7.56 -2.39 -0.02 0.77 16 34 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 35 H 0.07 1.30 7.90 -2.39 -0.02 1.28 16 36 H 0.15 1.02 8.04 -2.91 -0.02 0.99 16 37 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 38 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.41 7.38 7.89 -92.71 -0.73 6.65 16 41 H 0.07 1.64 7.86 -2.39 -0.02 1.63 16 42 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.11 2.62 8.10 -2.39 -0.02 2.60 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.36 18.38 6.73 -92.71 -0.62 17.75 16 46 H 0.24 14.97 6.77 -92.71 -0.63 14.34 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.09 2.45 7.91 -2.39 -0.02 2.43 16 Total: -1.00 -71.10 397.40 3.28 -67.82 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.24 Total: 34.59 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 4.67 Total: -21.05 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -3.93 Total: -115.04 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.05 Total: -17.40 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.36 kcal Total: -71.10 3.28 -67.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316640723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.499 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds