Wall clock time and date at job start Tue Mar 31 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47057 * 2 1 4 4 C 1.34773 * 120.00001 * 271.94051 * 3 2 1 5 5 O 1.21283 * 119.99935 * 186.87317 * 4 3 2 6 6 C 1.50707 * 119.99923 * 6.86358 * 4 3 2 7 7 H 1.08998 * 109.47080 * 7.22879 * 6 4 3 8 8 F 1.39898 * 109.46513 * 127.22700 * 6 4 3 9 9 C 1.52998 * 109.47025 * 247.23019 * 6 4 3 10 10 C 1.50700 * 109.46755 * 175.00505 * 9 6 4 11 11 C 1.38240 * 119.99633 * 269.71999 * 10 9 6 12 12 C 1.38237 * 119.99928 * 179.74429 * 11 10 9 13 13 C 1.38234 * 119.99722 * 0.53171 * 12 11 10 14 14 C 1.38234 * 120.00039 * 359.74819 * 13 12 11 15 15 C 1.38229 * 120.00407 * 359.97438 * 14 13 12 16 16 C 1.46504 * 119.99839 * 91.94030 * 3 2 1 17 17 H 1.08999 * 110.64233 * 12.12690 * 16 3 2 18 18 C 1.55150 * 110.71920 * 248.98599 * 16 3 2 19 19 C 1.54911 * 101.61911 * 276.94431 * 18 16 3 20 20 N 1.47472 * 104.80841 * 323.04288 * 19 18 16 21 21 C 1.36934 * 125.63006 * 204.13580 * 20 19 18 22 22 H 1.08000 * 120.00253 * 179.97438 * 21 20 19 23 23 C 1.38817 * 119.99813 * 359.92297 * 21 20 19 24 24 N 1.31620 * 119.99955 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99817 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47269 * 90.00117 * 25 23 21 27 27 H 1.48509 * 109.46728 * 209.99715 * 25 23 21 28 28 H 1.48500 * 109.47184 * 329.99455 * 25 23 21 29 29 C 1.47021 * 108.72028 * 24.06979 * 20 19 18 30 30 H 1.08996 * 109.47218 * 300.00559 * 1 2 3 31 31 H 1.09000 * 109.46963 * 60.00357 * 1 2 3 32 32 H 1.09004 * 109.46956 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47485 * 239.99920 * 2 1 3 34 34 H 1.09000 * 109.46963 * 119.99643 * 2 1 3 35 35 H 1.09000 * 109.46966 * 294.99920 * 9 6 4 36 36 H 1.08997 * 109.47260 * 54.99909 * 9 6 4 37 37 H 1.07999 * 119.99871 * 0.02562 * 11 10 9 38 38 H 1.07999 * 120.00053 * 180.30002 * 12 11 10 39 39 H 1.08001 * 119.99753 * 179.76815 * 13 12 11 40 40 H 1.07999 * 119.99714 * 179.97438 * 14 13 12 41 41 H 1.08002 * 120.00582 * 180.02562 * 15 14 13 42 42 H 1.09004 * 111.00358 * 35.03712 * 18 16 3 43 43 H 1.08996 * 111.00561 * 158.84982 * 18 16 3 44 44 H 1.09004 * 110.36594 * 81.84402 * 19 18 16 45 45 H 1.08998 * 110.36750 * 204.17090 * 19 18 16 46 46 H 0.97000 * 120.00056 * 179.97438 * 24 23 21 47 47 H 1.09003 * 109.87976 * 239.55444 * 29 20 19 48 48 H 1.09001 * 110.01037 * 118.46624 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2057 2.0298 -1.1665 5 8 2.7261 3.1253 -1.1745 6 6 1.7687 1.3936 -2.4609 7 1 1.2128 0.4806 -2.2476 8 9 0.9509 2.2838 -3.1651 9 6 2.9998 1.0558 -3.3042 10 6 2.5716 0.3100 -4.5418 11 6 2.4970 -1.0703 -4.5257 12 6 2.0991 -1.7542 -5.6593 13 6 1.7865 -1.0585 -6.8121 14 6 1.8668 0.3214 -6.8299 15 6 2.2590 1.0057 -5.6947 16 6 2.3030 2.0576 1.2681 17 1 2.3076 1.3437 2.0917 18 6 1.2751 3.1900 1.5290 19 6 1.8767 4.3540 0.7025 20 7 3.3360 4.2163 0.8645 21 6 4.2523 5.2249 0.7291 22 1 5.3037 5.0216 0.8688 23 6 3.8297 6.5085 0.4113 24 7 2.5484 6.7559 0.2396 25 14 5.0797 7.8842 0.2260 26 1 5.5352 7.9523 -1.1858 27 1 4.4541 9.1760 0.6071 28 1 6.2434 7.6181 1.1093 29 6 3.6441 2.8177 1.1968 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5067 1.9767 -3.5922 36 1 3.6795 0.4337 -2.7219 37 1 2.7451 -1.6141 -3.6262 38 1 2.0361 -2.8323 -5.6453 39 1 1.4793 -1.5930 -7.6989 40 1 1.6229 0.8649 -7.7307 41 1 2.3214 2.0838 -5.7084 42 1 0.2882 2.9155 1.1563 43 1 1.2337 3.4437 2.5882 44 1 1.6010 4.2558 -0.3475 45 1 1.5394 5.3128 1.0961 46 1 2.2531 7.6528 0.0179 47 1 4.1498 2.7686 2.1612 48 1 4.2769 2.3814 0.4240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318492570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:26 Heat of formation + Delta-G solvation = 3.173616 kcal Electronic energy + Delta-G solvation = -30422.638611 eV Core-core repulsion = 26394.121195 eV Total energy + Delta-G solvation = -4028.517415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -47.57290 -40.02655 -39.29928 -36.34487 -35.52906 -33.70029 -32.21885 -31.02128 -30.12928 -29.51960 -28.74627 -27.06304 -24.96698 -24.16289 -23.12269 -22.69910 -21.34563 -20.65247 -19.95481 -18.55465 -17.30403 -16.83954 -16.60280 -16.55642 -15.68577 -15.41664 -15.19351 -14.76772 -14.63857 -14.34115 -14.28694 -13.84940 -13.60181 -13.53888 -13.18231 -12.94641 -12.83425 -12.75720 -12.42609 -11.99026 -11.97272 -11.91161 -11.67212 -11.42922 -11.24613 -11.19241 -11.08570 -10.99079 -10.84714 -10.71624 -10.69333 -9.96033 -9.86927 -9.62620 -9.35856 -9.06179 -8.99662 -8.74352 -8.49986 -7.90578 -6.47307 -5.38648 -2.75641 1.17847 1.27367 2.97899 3.16383 3.53379 3.57596 3.59369 3.65507 4.36627 4.60585 4.65883 4.69534 4.77539 4.83352 4.85791 4.89680 5.01066 5.05228 5.14220 5.29596 5.36971 5.43455 5.46663 5.59492 5.60957 5.69932 5.73077 5.75159 5.76427 5.82905 5.93361 5.98135 6.05767 6.14100 6.30675 6.34726 6.37872 6.51640 6.53315 6.66084 6.74877 6.83835 6.86568 7.20173 7.72212 7.81538 7.96995 8.11920 8.61193 8.74678 9.48788 10.10736 10.77793 11.65038 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.003795 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.448716 B = 7377.097347 C = 8753.562384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.106 3.894 3 N -0.607 5.607 4 C 0.455 3.545 5 O -0.421 6.421 6 C 0.087 3.913 7 H 0.094 0.906 8 F -0.188 7.188 9 C -0.101 4.101 10 C -0.082 4.082 11 C -0.116 4.116 12 C -0.122 4.122 13 C -0.124 4.124 14 C -0.119 4.119 15 C -0.102 4.102 16 C 0.135 3.865 17 H 0.084 0.916 18 C -0.160 4.160 19 C 0.156 3.844 20 N -0.578 5.578 21 C -0.204 4.204 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.908 3.092 26 H -0.292 1.292 27 H -0.293 1.293 28 H -0.284 1.284 29 C 0.140 3.860 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.094 0.906 46 H 0.247 0.753 47 H 0.020 0.980 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 -21.201 -7.205 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.018 4.018 3 N -0.344 5.344 4 C 0.238 3.762 5 O -0.288 6.288 6 C 0.047 3.953 7 H 0.112 0.888 8 F -0.168 7.168 9 C -0.139 4.139 10 C -0.082 4.082 11 C -0.134 4.134 12 C -0.140 4.140 13 C -0.142 4.142 14 C -0.137 4.137 15 C -0.120 4.120 16 C 0.032 3.968 17 H 0.102 0.898 18 C -0.200 4.200 19 C 0.031 3.969 20 N -0.303 5.303 21 C -0.333 4.333 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.569 5.569 25 Si 0.739 3.261 26 H -0.220 1.220 27 H -0.220 1.220 28 H -0.210 1.210 29 C 0.013 3.987 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.112 0.888 46 H 0.057 0.943 47 H 0.038 0.962 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -4.376 -20.300 -7.277 22.005 hybrid contribution 0.440 0.555 -0.290 0.765 sum -3.936 -19.745 -7.567 21.509 Atomic orbital electron populations 1.22315 0.96145 1.01893 1.03072 1.21534 0.94398 0.83166 1.02677 1.47885 1.67378 1.13375 1.05796 1.20748 0.83218 0.87281 0.84991 1.91168 1.35615 1.16848 1.85196 1.21647 0.91675 0.91729 0.90253 0.88782 1.92879 1.73603 1.70916 1.79444 1.21088 0.96535 1.02290 0.93977 1.19756 0.99730 0.93673 0.95026 1.21053 1.00310 0.93513 0.98560 1.21101 0.99937 0.99740 0.93252 1.21151 1.00482 0.94439 0.98172 1.21172 0.99793 0.94447 0.98325 1.21191 0.97999 1.00416 0.92411 1.22117 0.97264 0.93938 0.83459 0.89820 1.23547 0.97092 0.98154 1.01195 1.22119 0.82945 0.95569 0.96221 1.44165 1.02925 1.01966 1.81276 1.18963 0.88254 0.87054 1.39049 0.91173 1.24676 0.96065 0.97307 1.02788 1.69831 1.12258 1.19378 1.55476 0.86163 0.80189 0.82082 0.77633 1.21999 1.21952 1.21010 1.21368 0.92906 0.87656 0.96793 0.91775 0.92428 0.91792 0.91076 0.90150 0.88436 0.89001 0.86041 0.86134 0.86265 0.86027 0.85615 0.92574 0.91682 0.94521 0.88824 0.94259 0.96208 0.96236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.98 37.16 0.37 -1.29 16 2 C 0.11 1.07 5.71 -4.04 -0.02 1.04 16 3 N -0.61 -9.29 2.51 -164.03 -0.41 -9.70 16 4 C 0.45 8.28 5.85 -10.98 -0.06 8.21 16 5 O -0.42 -10.22 10.54 5.55 0.06 -10.16 16 6 C 0.09 1.27 3.05 -27.88 -0.08 1.19 16 7 H 0.09 1.10 4.90 -51.93 -0.25 0.84 16 8 F -0.19 -3.34 16.74 2.25 0.04 -3.30 16 9 C -0.10 -1.32 5.09 -27.88 -0.14 -1.46 16 10 C -0.08 -0.96 5.00 -104.62 -0.52 -1.49 16 11 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 12 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 13 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 14 C -0.12 -1.23 10.05 -39.59 -0.40 -1.62 16 15 C -0.10 -1.23 9.55 -39.59 -0.38 -1.61 16 16 C 0.14 2.36 3.70 -66.10 -0.24 2.11 16 17 H 0.08 1.17 7.81 -51.93 -0.41 0.77 16 18 C -0.16 -3.18 6.67 -24.59 -0.16 -3.34 16 19 C 0.16 4.08 4.91 -2.50 -0.01 4.06 16 20 N -0.58 -15.68 2.27 -170.03 -0.39 -16.07 16 21 C -0.20 -6.08 10.27 -15.06 -0.15 -6.23 16 22 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 23 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 24 N -0.92 -28.75 10.09 55.49 0.56 -28.19 16 25 Si 0.91 23.58 29.55 -169.99 -5.02 18.55 16 26 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 29 C 0.14 3.07 5.99 -3.07 -0.02 3.06 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.62 7.19 -51.93 -0.37 0.25 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.59 6.55 -51.93 -0.34 0.25 16 34 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 35 H 0.10 1.48 8.09 -51.93 -0.42 1.06 16 36 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.04 1.08 5.38 -51.98 -0.28 0.80 16 45 H 0.09 2.78 5.88 -51.93 -0.31 2.47 16 46 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.02 0.45 7.29 -51.93 -0.38 0.08 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -35.98 380.30 -9.90 -45.88 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.36 Total: -0.32 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.11 Total: -2.44 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.24 Total: -53.95 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.06 Total: -10.16 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.02 Total: 18.55 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.98 -9.90 -45.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318492570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.057 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds