Wall clock time and date at job start Tue Mar 31 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47057 * 2 1 4 4 C 1.34773 * 120.00001 * 271.94051 * 3 2 1 5 5 O 1.21283 * 119.99935 * 186.87317 * 4 3 2 6 6 C 1.50707 * 119.99923 * 6.86358 * 4 3 2 7 7 H 1.08998 * 109.47080 * 7.22879 * 6 4 3 8 8 F 1.39898 * 109.46513 * 127.22700 * 6 4 3 9 9 C 1.52998 * 109.47025 * 247.23019 * 6 4 3 10 10 C 1.50700 * 109.46755 * 175.00505 * 9 6 4 11 11 C 1.38240 * 119.99633 * 269.71999 * 10 9 6 12 12 C 1.38237 * 119.99928 * 179.74429 * 11 10 9 13 13 C 1.38234 * 119.99722 * 0.53171 * 12 11 10 14 14 C 1.38234 * 120.00039 * 359.74819 * 13 12 11 15 15 C 1.38229 * 120.00407 * 359.97438 * 14 13 12 16 16 C 1.46504 * 119.99839 * 91.94030 * 3 2 1 17 17 H 1.08999 * 110.64233 * 12.12690 * 16 3 2 18 18 C 1.55150 * 110.71920 * 248.98599 * 16 3 2 19 19 C 1.54911 * 101.61911 * 276.94431 * 18 16 3 20 20 N 1.47472 * 104.80841 * 323.04288 * 19 18 16 21 21 C 1.36934 * 125.63006 * 204.13580 * 20 19 18 22 22 H 1.08000 * 120.00253 * 179.97438 * 21 20 19 23 23 C 1.38817 * 119.99813 * 359.92297 * 21 20 19 24 24 N 1.31620 * 119.99955 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99817 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47269 * 90.00117 * 25 23 21 27 27 H 1.48509 * 109.46728 * 209.99715 * 25 23 21 28 28 H 1.48500 * 109.47184 * 329.99455 * 25 23 21 29 29 C 1.47021 * 108.72028 * 24.06979 * 20 19 18 30 30 H 1.08996 * 109.47218 * 300.00559 * 1 2 3 31 31 H 1.09000 * 109.46963 * 60.00357 * 1 2 3 32 32 H 1.09004 * 109.46956 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47485 * 239.99920 * 2 1 3 34 34 H 1.09000 * 109.46963 * 119.99643 * 2 1 3 35 35 H 1.09000 * 109.46966 * 294.99920 * 9 6 4 36 36 H 1.08997 * 109.47260 * 54.99909 * 9 6 4 37 37 H 1.07999 * 119.99871 * 0.02562 * 11 10 9 38 38 H 1.07999 * 120.00053 * 180.30002 * 12 11 10 39 39 H 1.08001 * 119.99753 * 179.76815 * 13 12 11 40 40 H 1.07999 * 119.99714 * 179.97438 * 14 13 12 41 41 H 1.08002 * 120.00582 * 180.02562 * 15 14 13 42 42 H 1.09004 * 111.00358 * 35.03712 * 18 16 3 43 43 H 1.08996 * 111.00561 * 158.84982 * 18 16 3 44 44 H 1.09004 * 110.36594 * 81.84402 * 19 18 16 45 45 H 1.08998 * 110.36750 * 204.17090 * 19 18 16 46 46 H 0.97000 * 120.00056 * 179.97438 * 24 23 21 47 47 H 1.09003 * 109.87976 * 239.55444 * 29 20 19 48 48 H 1.09001 * 110.01037 * 118.46624 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2057 2.0298 -1.1665 5 8 2.7261 3.1253 -1.1745 6 6 1.7687 1.3936 -2.4609 7 1 1.2128 0.4806 -2.2476 8 9 0.9509 2.2838 -3.1651 9 6 2.9998 1.0558 -3.3042 10 6 2.5716 0.3100 -4.5418 11 6 2.4970 -1.0703 -4.5257 12 6 2.0991 -1.7542 -5.6593 13 6 1.7865 -1.0585 -6.8121 14 6 1.8668 0.3214 -6.8299 15 6 2.2590 1.0057 -5.6947 16 6 2.3030 2.0576 1.2681 17 1 2.3076 1.3437 2.0917 18 6 1.2751 3.1900 1.5290 19 6 1.8767 4.3540 0.7025 20 7 3.3360 4.2163 0.8645 21 6 4.2523 5.2249 0.7291 22 1 5.3037 5.0216 0.8688 23 6 3.8297 6.5085 0.4113 24 7 2.5484 6.7559 0.2396 25 14 5.0797 7.8842 0.2260 26 1 5.5352 7.9523 -1.1858 27 1 4.4541 9.1760 0.6071 28 1 6.2434 7.6181 1.1093 29 6 3.6441 2.8177 1.1968 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5067 1.9767 -3.5922 36 1 3.6795 0.4337 -2.7219 37 1 2.7451 -1.6141 -3.6262 38 1 2.0361 -2.8323 -5.6453 39 1 1.4793 -1.5930 -7.6989 40 1 1.6229 0.8649 -7.7307 41 1 2.3214 2.0838 -5.7084 42 1 0.2882 2.9155 1.1563 43 1 1.2337 3.4437 2.5882 44 1 1.6010 4.2558 -0.3475 45 1 1.5394 5.3128 1.0961 46 1 2.2531 7.6528 0.0179 47 1 4.1498 2.7686 2.1612 48 1 4.2769 2.3814 0.4240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318492570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:25 Heat of formation + Delta-G solvation = -17.858013 kcal Electronic energy + Delta-G solvation = -30423.550610 eV Core-core repulsion = 26394.121195 eV Total energy + Delta-G solvation = -4029.429415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.90241 -41.44948 -40.10355 -38.05741 -36.86357 -34.82171 -34.07018 -31.76990 -31.49981 -30.82477 -30.24828 -28.69120 -26.57885 -25.76893 -24.01273 -23.45716 -22.45560 -21.99190 -21.83221 -19.92020 -18.87273 -18.31636 -17.86105 -17.65510 -17.05055 -16.70301 -16.49308 -16.19515 -15.78382 -15.77246 -15.58137 -15.54829 -14.73492 -14.44816 -14.27275 -14.10714 -14.07525 -13.72475 -13.69257 -13.56911 -13.39460 -13.30466 -13.02585 -12.90057 -12.83218 -12.70705 -12.30210 -12.14133 -12.07221 -12.00416 -11.96567 -11.85471 -11.72208 -11.54352 -11.27275 -10.72557 -10.28142 -9.81034 -9.64852 -9.43085 -8.63329 -7.65339 -5.03756 0.39051 0.51188 1.40484 1.44772 1.52296 1.59848 1.95071 2.53946 2.85609 3.26550 3.41697 3.54935 3.60968 3.82379 3.84340 3.93339 3.95726 4.09794 4.12209 4.18512 4.20354 4.31676 4.33784 4.43697 4.54232 4.59434 4.63558 4.73426 4.77294 4.79563 4.82338 4.95813 4.99326 5.05095 5.09576 5.11543 5.18100 5.18371 5.43800 5.49398 5.57165 5.63443 5.69845 5.80613 5.87759 5.98850 6.12654 6.42662 6.48436 7.22251 7.36656 7.95410 8.59933 9.36085 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.003795 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.448716 B = 7377.097347 C = 8753.562384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 N -0.599 5.599 4 C 0.451 3.549 5 O -0.497 6.497 6 C 0.091 3.909 7 H 0.135 0.865 8 F -0.211 7.211 9 C -0.092 4.092 10 C -0.098 4.098 11 C -0.114 4.114 12 C -0.120 4.120 13 C -0.124 4.124 14 C -0.130 4.130 15 C -0.131 4.131 16 C 0.150 3.850 17 H 0.139 0.861 18 C -0.145 4.145 19 C 0.161 3.839 20 N -0.596 5.596 21 C -0.217 4.217 22 H 0.070 0.930 23 C -0.076 4.076 24 N -0.949 5.949 25 Si 0.973 3.027 26 H -0.297 1.297 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.134 3.866 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.113 0.887 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.001 0.999 45 H 0.049 0.951 46 H 0.238 0.762 47 H 0.032 0.968 48 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -26.021 -6.575 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.025 4.025 3 N -0.335 5.335 4 C 0.236 3.764 5 O -0.369 6.369 6 C 0.052 3.948 7 H 0.152 0.848 8 F -0.191 7.191 9 C -0.130 4.130 10 C -0.098 4.098 11 C -0.132 4.132 12 C -0.138 4.138 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.149 4.149 16 C 0.046 3.954 17 H 0.156 0.844 18 C -0.185 4.185 19 C 0.037 3.963 20 N -0.321 5.321 21 C -0.347 4.347 22 H 0.088 0.912 23 C -0.267 4.267 24 N -0.600 5.600 25 Si 0.802 3.198 26 H -0.225 1.225 27 H -0.219 1.219 28 H -0.191 1.191 29 C 0.008 3.992 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.151 0.849 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.019 0.981 45 H 0.067 0.933 46 H 0.048 0.952 47 H 0.049 0.951 48 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -4.594 -25.209 -6.623 26.466 hybrid contribution 0.503 1.929 -0.545 2.066 sum -4.092 -23.280 -7.168 24.700 Atomic orbital electron populations 1.22295 0.95424 1.03668 1.01761 1.22016 0.94899 0.79997 1.05621 1.48026 1.66041 1.15240 1.04150 1.21437 0.81703 0.86480 0.86791 1.91151 1.39171 1.20133 1.86450 1.21865 0.92489 0.91930 0.88529 0.84764 1.92829 1.74339 1.72092 1.79888 1.20976 0.95902 1.01243 0.94910 1.19691 1.01248 0.94800 0.94028 1.21353 0.99397 0.92317 1.00147 1.21525 0.98376 1.01378 0.92490 1.21531 0.99347 0.93813 0.99503 1.21374 0.99807 0.95526 0.98076 1.21216 0.99995 0.99711 0.93971 1.22051 0.93240 0.94141 0.85964 0.84381 1.23349 0.98058 0.96527 1.00557 1.21768 0.83270 0.96148 0.95159 1.44393 1.02991 1.03739 1.80952 1.19346 0.88970 0.88246 1.38153 0.91164 1.25522 0.97942 0.99784 1.03475 1.70151 1.14055 1.19078 1.56761 0.85135 0.78412 0.78911 0.77292 1.22480 1.21915 1.19102 1.21570 0.95654 0.85618 0.96354 0.92627 0.94312 0.88423 0.88572 0.86866 0.92167 0.86904 0.83209 0.82903 0.83617 0.84937 0.87940 0.91053 0.90556 0.98121 0.93331 0.95232 0.95064 0.97556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.98 71.98 0.72 -1.80 16 2 C 0.10 1.45 5.71 86.38 0.49 1.94 16 3 N -0.60 -16.93 2.51 -791.25 -1.99 -18.91 16 4 C 0.45 16.57 5.85 87.66 0.51 17.09 16 5 O -0.50 -25.55 10.54 -3.04 -0.03 -25.58 16 6 C 0.09 2.65 3.05 29.85 0.09 2.75 16 7 H 0.14 2.77 4.90 -2.39 -0.01 2.76 16 8 F -0.21 -7.90 16.74 44.97 0.75 -7.15 16 9 C -0.09 -2.45 5.09 29.85 0.15 -2.29 16 10 C -0.10 -2.24 5.00 -19.86 -0.10 -2.34 16 11 C -0.11 -1.87 9.70 22.27 0.22 -1.65 16 12 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 13 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 14 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 15 C -0.13 -3.29 9.55 22.27 0.21 -3.08 16 16 C 0.15 4.84 3.70 46.18 0.17 5.02 16 17 H 0.14 3.09 7.81 -2.39 -0.02 3.07 16 18 C -0.15 -5.66 6.67 31.98 0.21 -5.45 16 19 C 0.16 8.87 4.91 86.85 0.43 9.30 16 20 N -0.60 -33.55 2.27 -691.86 -1.57 -35.12 16 21 C -0.22 -13.47 10.27 84.04 0.86 -12.61 16 22 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 23 C -0.08 -4.76 5.49 84.86 0.47 -4.30 16 24 N -0.95 -62.99 10.09 21.65 0.22 -62.77 16 25 Si 0.97 50.55 29.55 68.60 2.03 52.58 16 26 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 27 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 28 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 29 C 0.13 5.85 5.99 86.73 0.52 6.37 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.72 7.19 -2.39 -0.02 0.70 16 32 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.10 1.03 6.55 -2.39 -0.02 1.02 16 34 H 0.11 1.10 7.85 -2.39 -0.02 1.09 16 35 H 0.06 2.02 8.09 -2.39 -0.02 2.00 16 36 H 0.11 2.41 8.08 -2.39 -0.02 2.39 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.10 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 43 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.00 0.08 5.38 -3.27 -0.02 0.06 16 45 H 0.05 3.08 5.88 -2.39 -0.01 3.07 16 46 H 0.24 15.41 8.31 -92.71 -0.77 14.64 16 47 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.01 0.30 7.29 -2.39 -0.02 0.28 16 Total: -1.00 -88.17 380.30 5.98 -82.20 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.94 Total: 11.34 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 5.63 Total: 3.43 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -3.34 Total: -116.81 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.03 Total: -25.58 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 0.75 Total: -7.15 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.03 Total: 52.58 kcal Total: -88.17 5.98 -82.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318492570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.337 kcal (2) G-P(sol) polarization free energy of solvation -88.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds