Wall clock time and date at job start Tue Mar 31 2020 18:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.46833 * 2 1 4 4 C 1.34779 * 120.00361 * 269.99740 * 3 2 1 5 5 O 1.21277 * 120.00064 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.99716 * 0.02562 * 4 3 2 7 7 H 1.09007 * 109.47027 * 15.00107 * 6 4 3 8 8 F 1.39893 * 109.47459 * 255.00048 * 6 4 3 9 9 C 1.53004 * 109.46989 * 134.99747 * 6 4 3 10 10 C 1.50702 * 109.46960 * 185.00263 * 9 6 4 11 11 C 1.38240 * 119.99659 * 269.72843 * 10 9 6 12 12 C 1.38230 * 119.99514 * 179.76793 * 11 10 9 13 13 C 1.38236 * 120.00687 * 0.50542 * 12 11 10 14 14 C 1.38235 * 119.99307 * 359.74385 * 13 12 11 15 15 C 1.38231 * 120.00140 * 90.00051 * 10 9 6 16 16 C 1.46506 * 119.99880 * 90.00029 * 3 2 1 17 17 H 1.09001 * 110.91822 * 356.09305 * 16 3 2 18 18 C 1.55157 * 111.00374 * 120.00029 * 16 3 2 19 19 C 1.54321 * 103.10033 * 153.66359 * 18 16 3 20 20 N 1.47019 * 107.27531 * 337.71659 * 19 18 16 21 21 C 1.36931 * 125.65157 * 178.90454 * 20 19 18 22 22 H 1.07998 * 120.00396 * 180.02562 * 21 20 19 23 23 C 1.38821 * 119.99902 * 0.02562 * 21 20 19 24 24 N 1.31616 * 119.99909 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99845 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47535 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47325 * 120.00134 * 25 23 21 28 28 H 1.48506 * 109.47006 * 239.99849 * 25 23 21 29 29 C 1.47431 * 108.70142 * 358.94050 * 20 19 18 30 30 H 1.08999 * 109.46976 * 60.00167 * 1 2 3 31 31 H 1.09003 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47152 * 299.99617 * 1 2 3 33 33 H 1.08995 * 109.47091 * 240.00001 * 2 1 3 34 34 H 1.08999 * 109.46976 * 119.99833 * 2 1 3 35 35 H 1.09002 * 109.47143 * 304.99875 * 9 6 4 36 36 H 1.08997 * 109.46830 * 65.00055 * 9 6 4 37 37 H 1.07997 * 120.00173 * 359.97438 * 11 10 9 38 38 H 1.08008 * 120.00039 * 180.22819 * 12 11 10 39 39 H 1.07991 * 120.00447 * 179.72992 * 13 12 11 40 40 H 1.08004 * 119.99741 * 179.97438 * 14 13 12 41 41 H 1.07996 * 120.00298 * 359.97438 * 15 10 9 42 42 H 1.09002 * 110.72219 * 35.21056 * 18 16 3 43 43 H 1.09003 * 110.71618 * 272.11669 * 18 16 3 44 44 H 1.09001 * 109.88480 * 97.13771 * 19 18 16 45 45 H 1.09003 * 109.88132 * 218.14177 * 19 18 16 46 46 H 0.96994 * 119.99831 * 179.97438 * 24 23 21 47 47 H 1.08999 * 110.36190 * 142.96411 * 29 20 19 48 48 H 1.08998 * 110.36491 * 265.18090 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.6476 3.1599 -1.1671 6 6 1.9914 1.3064 -2.4723 7 1 1.3932 0.4134 -2.2906 8 9 3.2131 0.9402 -3.0471 9 6 1.2392 2.2391 -3.4237 10 6 0.8797 1.4905 -4.6813 11 6 1.7506 1.4843 -5.7548 12 6 1.4230 0.7936 -6.9065 13 6 0.2200 0.1177 -6.9886 14 6 -0.6532 0.1282 -5.9170 15 6 -0.3233 0.8146 -4.7633 16 6 2.2624 2.0718 1.2688 17 1 1.9687 1.4490 2.1137 18 6 3.7469 2.5072 1.3883 19 6 3.6795 3.7231 2.3363 20 7 2.3102 4.2540 2.2688 21 6 1.8324 5.3223 2.9797 22 1 0.8059 5.6357 2.8593 23 6 2.6676 6.0028 3.8553 24 7 3.9184 5.6206 4.0025 25 14 2.0157 7.4597 4.8256 26 1 0.5884 7.6844 4.4826 27 1 2.1380 7.1812 6.2791 28 1 2.8026 8.6725 4.4862 29 6 1.5363 3.4450 1.3095 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.3295 2.5949 -2.9401 36 1 1.8732 3.0893 -3.6756 37 1 2.6884 2.0163 -5.6925 38 1 2.1051 0.7857 -7.7439 39 1 -0.0379 -0.4183 -7.8900 40 1 -1.5933 -0.3995 -5.9813 41 1 -1.0055 0.8227 -3.9261 42 1 4.1430 2.7983 0.4154 43 1 4.3485 1.7103 1.8253 44 1 3.9064 3.4113 3.3558 45 1 4.3908 4.4838 2.0146 46 1 4.5020 6.0963 4.6140 47 1 0.5110 3.3213 1.6581 48 1 1.5477 3.9111 0.3243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318492573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:39 Heat of formation + Delta-G solvation = -23.594748 kcal Electronic energy + Delta-G solvation = -29499.920820 eV Core-core repulsion = 25470.242641 eV Total energy + Delta-G solvation = -4029.678179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -47.93328 -40.13485 -39.40879 -36.85381 -35.67614 -33.90484 -32.36813 -31.13282 -30.41707 -29.75174 -28.83670 -27.19523 -25.15697 -24.10081 -23.31186 -22.81501 -21.54355 -20.76241 -20.02304 -19.04904 -17.53837 -16.96362 -16.91436 -16.73913 -15.86366 -15.47035 -15.33309 -14.97148 -14.72273 -14.52802 -14.35328 -14.05842 -13.79657 -13.65356 -13.36952 -13.09402 -12.95389 -12.79438 -12.76040 -12.28258 -12.16354 -12.05897 -11.89623 -11.72818 -11.46494 -11.32850 -11.23250 -11.12485 -10.86938 -10.82217 -10.68159 -10.25423 -10.02875 -9.89091 -9.61854 -9.21125 -9.15446 -8.91330 -8.58595 -8.39653 -6.71037 -5.63490 -2.96061 1.06072 1.16235 2.54401 2.88789 3.44273 3.49366 3.52030 3.52544 4.09771 4.39317 4.41778 4.56717 4.58721 4.68557 4.73674 4.77063 4.88917 4.90083 5.00766 5.19097 5.26318 5.30146 5.43690 5.47501 5.54080 5.56936 5.61866 5.62695 5.64188 5.80888 5.81392 5.84417 5.87154 6.02549 6.19494 6.20494 6.26747 6.38474 6.49204 6.59808 6.63897 6.73854 6.75157 7.19145 7.46466 7.64113 7.73799 7.90709 8.20238 8.34074 9.29757 9.90199 10.57095 11.48389 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.002657 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.712462 B =10535.147960 C =10775.586617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.595 5.595 4 C 0.488 3.512 5 O -0.493 6.493 6 C 0.084 3.916 7 H 0.101 0.899 8 F -0.189 7.189 9 C -0.099 4.099 10 C -0.085 4.085 11 C -0.103 4.103 12 C -0.120 4.120 13 C -0.123 4.123 14 C -0.121 4.121 15 C -0.115 4.115 16 C 0.128 3.872 17 H 0.094 0.906 18 C -0.154 4.154 19 C 0.185 3.815 20 N -0.602 5.602 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.126 3.874 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.043 0.957 46 H 0.251 0.749 47 H 0.031 0.969 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 -17.126 -18.379 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.025 4.025 3 N -0.329 5.329 4 C 0.272 3.728 5 O -0.367 6.367 6 C 0.044 3.956 7 H 0.118 0.882 8 F -0.170 7.170 9 C -0.137 4.137 10 C -0.085 4.085 11 C -0.121 4.121 12 C -0.138 4.138 13 C -0.141 4.141 14 C -0.139 4.139 15 C -0.133 4.133 16 C 0.025 3.975 17 H 0.112 0.888 18 C -0.193 4.193 19 C 0.060 3.940 20 N -0.328 5.328 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.207 4.207 24 N -0.570 5.570 25 Si 0.742 3.258 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.001 4.001 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.711 -16.350 -18.216 25.663 hybrid contribution -0.213 0.579 0.543 0.822 sum -7.925 -15.771 -17.673 24.977 Atomic orbital electron populations 1.22278 0.95577 1.02320 1.03077 1.21687 0.94707 0.82693 1.03446 1.48039 1.64999 1.13705 1.06119 1.20758 0.79487 0.87378 0.85194 1.90793 1.42462 1.16809 1.86604 1.21740 0.83189 0.99443 0.91180 0.88157 1.92875 1.45922 1.92763 1.85460 1.21051 1.01985 0.97921 0.92694 1.19741 0.94893 0.98540 0.95320 1.21151 0.99235 0.98886 0.92837 1.21170 0.96994 0.97654 0.97965 1.21169 0.94549 0.99664 0.98709 1.21127 0.99631 0.99586 0.93559 1.21084 0.96337 0.97568 0.98284 1.22574 0.97629 0.94417 0.82852 0.88835 1.23235 0.94452 0.99765 1.01844 1.21048 0.86960 0.90543 0.95446 1.44317 1.07540 1.33640 1.47351 1.19085 0.95639 1.04109 1.16237 0.90503 1.24799 0.95980 0.99710 1.00174 1.69978 1.04948 1.41999 1.40110 0.86042 0.77815 0.82318 0.79587 1.20568 1.21837 1.21799 1.21977 0.93619 0.89323 0.95164 0.92512 0.91377 0.91489 0.90542 0.89650 0.88670 0.88268 0.85727 0.86014 0.86198 0.86045 0.85925 0.91013 0.92584 0.93722 0.93914 0.93882 0.95079 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.07 37.16 0.37 -1.04 16 2 C 0.10 0.94 5.69 -4.04 -0.02 0.92 16 3 N -0.60 -8.52 2.57 -163.38 -0.42 -8.94 16 4 C 0.49 7.60 6.31 -10.98 -0.07 7.53 16 5 O -0.49 -9.95 12.65 5.56 0.07 -9.88 16 6 C 0.08 1.00 3.15 -27.88 -0.09 0.91 16 7 H 0.10 0.92 5.31 -51.92 -0.28 0.65 16 8 F -0.19 -2.60 16.76 2.25 0.04 -2.56 16 9 C -0.10 -1.09 4.83 -27.88 -0.13 -1.23 16 10 C -0.08 -0.85 5.00 -104.62 -0.52 -1.38 16 11 C -0.10 -1.03 9.56 -39.58 -0.38 -1.41 16 12 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 13 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 14 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 15 C -0.11 -0.99 9.70 -39.58 -0.38 -1.38 16 16 C 0.13 2.31 3.56 -65.52 -0.23 2.08 16 17 H 0.09 1.55 7.92 -51.93 -0.41 1.14 16 18 C -0.15 -3.16 6.32 -24.90 -0.16 -3.31 16 19 C 0.19 4.78 5.37 -3.07 -0.02 4.76 16 20 N -0.60 -16.21 3.40 -169.76 -0.58 -16.78 16 21 C -0.22 -6.45 10.28 -15.06 -0.15 -6.60 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 24 N -0.92 -28.05 10.31 55.49 0.57 -27.48 16 25 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 C 0.13 2.79 6.59 -2.26 -0.01 2.77 16 30 H 0.06 0.45 7.73 -51.93 -0.40 0.04 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.62 6.23 -51.93 -0.32 0.29 16 34 H 0.09 0.75 7.99 -51.93 -0.41 0.33 16 35 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 36 H 0.10 1.24 7.99 -51.93 -0.41 0.82 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.07 1.57 6.25 -51.93 -0.32 1.24 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.04 1.24 7.38 -51.93 -0.38 0.85 16 45 H 0.04 1.24 7.51 -51.93 -0.39 0.85 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 1.13 5.56 -51.93 -0.29 0.84 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -34.57 385.57 -10.02 -44.59 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.40 Total: -0.60 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -3.09 Total: -1.92 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.42 Total: -53.20 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.57 -10.02 -44.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318492573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.994 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds