Wall clock time and date at job start Tue Mar 31 2020 18:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.46833 * 2 1 4 4 C 1.34779 * 120.00361 * 269.99740 * 3 2 1 5 5 O 1.21277 * 120.00064 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.99716 * 0.02562 * 4 3 2 7 7 H 1.09007 * 109.47027 * 15.00107 * 6 4 3 8 8 F 1.39893 * 109.47459 * 255.00048 * 6 4 3 9 9 C 1.53004 * 109.46989 * 134.99747 * 6 4 3 10 10 C 1.50702 * 109.46960 * 185.00263 * 9 6 4 11 11 C 1.38240 * 119.99659 * 269.72843 * 10 9 6 12 12 C 1.38230 * 119.99514 * 179.76793 * 11 10 9 13 13 C 1.38236 * 120.00687 * 0.50542 * 12 11 10 14 14 C 1.38235 * 119.99307 * 359.74385 * 13 12 11 15 15 C 1.38231 * 120.00140 * 90.00051 * 10 9 6 16 16 C 1.46506 * 119.99880 * 90.00029 * 3 2 1 17 17 H 1.09001 * 110.91822 * 356.09305 * 16 3 2 18 18 C 1.55157 * 111.00374 * 120.00029 * 16 3 2 19 19 C 1.54321 * 103.10033 * 153.66359 * 18 16 3 20 20 N 1.47019 * 107.27531 * 337.71659 * 19 18 16 21 21 C 1.36931 * 125.65157 * 178.90454 * 20 19 18 22 22 H 1.07998 * 120.00396 * 180.02562 * 21 20 19 23 23 C 1.38821 * 119.99902 * 0.02562 * 21 20 19 24 24 N 1.31616 * 119.99909 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99845 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47535 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47325 * 120.00134 * 25 23 21 28 28 H 1.48506 * 109.47006 * 239.99849 * 25 23 21 29 29 C 1.47431 * 108.70142 * 358.94050 * 20 19 18 30 30 H 1.08999 * 109.46976 * 60.00167 * 1 2 3 31 31 H 1.09003 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47152 * 299.99617 * 1 2 3 33 33 H 1.08995 * 109.47091 * 240.00001 * 2 1 3 34 34 H 1.08999 * 109.46976 * 119.99833 * 2 1 3 35 35 H 1.09002 * 109.47143 * 304.99875 * 9 6 4 36 36 H 1.08997 * 109.46830 * 65.00055 * 9 6 4 37 37 H 1.07997 * 120.00173 * 359.97438 * 11 10 9 38 38 H 1.08008 * 120.00039 * 180.22819 * 12 11 10 39 39 H 1.07991 * 120.00447 * 179.72992 * 13 12 11 40 40 H 1.08004 * 119.99741 * 179.97438 * 14 13 12 41 41 H 1.07996 * 120.00298 * 359.97438 * 15 10 9 42 42 H 1.09002 * 110.72219 * 35.21056 * 18 16 3 43 43 H 1.09003 * 110.71618 * 272.11669 * 18 16 3 44 44 H 1.09001 * 109.88480 * 97.13771 * 19 18 16 45 45 H 1.09003 * 109.88132 * 218.14177 * 19 18 16 46 46 H 0.96994 * 119.99831 * 179.97438 * 24 23 21 47 47 H 1.08999 * 110.36190 * 142.96411 * 29 20 19 48 48 H 1.08998 * 110.36491 * 265.18090 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.6476 3.1599 -1.1671 6 6 1.9914 1.3064 -2.4723 7 1 1.3932 0.4134 -2.2906 8 9 3.2131 0.9402 -3.0471 9 6 1.2392 2.2391 -3.4237 10 6 0.8797 1.4905 -4.6813 11 6 1.7506 1.4843 -5.7548 12 6 1.4230 0.7936 -6.9065 13 6 0.2200 0.1177 -6.9886 14 6 -0.6532 0.1282 -5.9170 15 6 -0.3233 0.8146 -4.7633 16 6 2.2624 2.0718 1.2688 17 1 1.9687 1.4490 2.1137 18 6 3.7469 2.5072 1.3883 19 6 3.6795 3.7231 2.3363 20 7 2.3102 4.2540 2.2688 21 6 1.8324 5.3223 2.9797 22 1 0.8059 5.6357 2.8593 23 6 2.6676 6.0028 3.8553 24 7 3.9184 5.6206 4.0025 25 14 2.0157 7.4597 4.8256 26 1 0.5884 7.6844 4.4826 27 1 2.1380 7.1812 6.2791 28 1 2.8026 8.6725 4.4862 29 6 1.5363 3.4450 1.3095 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.3295 2.5949 -2.9401 36 1 1.8732 3.0893 -3.6756 37 1 2.6884 2.0163 -5.6925 38 1 2.1051 0.7857 -7.7439 39 1 -0.0379 -0.4183 -7.8900 40 1 -1.5933 -0.3995 -5.9813 41 1 -1.0055 0.8227 -3.9261 42 1 4.1430 2.7983 0.4154 43 1 4.3485 1.7103 1.8253 44 1 3.9064 3.4113 3.3558 45 1 4.3908 4.4838 2.0146 46 1 4.5020 6.0963 4.6140 47 1 0.5110 3.3213 1.6581 48 1 1.5477 3.9111 0.3243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318492573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:38 Heat of formation + Delta-G solvation = -42.959229 kcal Electronic energy + Delta-G solvation = -29500.760527 eV Core-core repulsion = 25470.242641 eV Total energy + Delta-G solvation = -4030.517886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -48.97658 -41.42534 -40.08299 -38.56270 -36.94829 -34.85409 -34.20483 -31.77365 -31.73609 -30.83678 -30.39906 -28.77498 -26.71936 -25.59293 -24.15532 -23.43839 -22.66308 -22.07332 -21.80915 -20.24519 -19.04012 -18.39138 -18.02897 -17.63039 -16.98274 -16.77945 -16.50780 -16.30486 -15.81377 -15.78439 -15.53780 -15.45070 -14.93976 -14.58254 -14.29832 -14.24244 -14.19550 -14.08972 -13.73265 -13.69258 -13.60071 -13.35503 -13.02787 -12.94050 -12.81813 -12.70669 -12.33309 -12.20307 -12.16499 -12.05331 -11.99415 -11.90768 -11.85140 -11.81360 -11.52743 -10.74421 -10.54023 -9.79067 -9.75712 -9.62905 -8.87759 -7.86333 -5.22377 0.40356 0.53232 1.32664 1.43297 1.45838 1.55951 1.73104 2.48625 2.85978 3.08222 3.32121 3.51575 3.53379 3.68509 3.78400 3.87297 3.90954 4.00252 4.05530 4.14073 4.20242 4.21176 4.34136 4.37267 4.51155 4.55835 4.61338 4.65377 4.68875 4.80685 4.84292 4.86288 4.89894 4.97153 5.01017 5.12500 5.16150 5.20380 5.41023 5.41706 5.59447 5.61178 5.63470 5.65782 5.70937 5.71830 6.14040 6.16803 6.29874 7.00219 7.07744 7.74526 8.40379 9.24650 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.002657 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.712462 B =10535.147960 C =10775.586617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.089 3.911 3 N -0.589 5.589 4 C 0.482 3.518 5 O -0.550 6.550 6 C 0.095 3.905 7 H 0.139 0.861 8 F -0.199 7.199 9 C -0.094 4.094 10 C -0.099 4.099 11 C -0.124 4.124 12 C -0.128 4.128 13 C -0.125 4.125 14 C -0.123 4.123 15 C -0.118 4.118 16 C 0.150 3.850 17 H 0.118 0.882 18 C -0.140 4.140 19 C 0.196 3.804 20 N -0.623 5.623 21 C -0.241 4.241 22 H 0.082 0.918 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.983 3.017 26 H -0.264 1.264 27 H -0.287 1.287 28 H -0.295 1.295 29 C 0.123 3.877 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.020 0.980 45 H -0.006 1.006 46 H 0.247 0.753 47 H 0.042 0.958 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 -19.971 -19.294 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.032 4.032 3 N -0.321 5.321 4 C 0.268 3.732 5 O -0.427 6.427 6 C 0.056 3.944 7 H 0.156 0.844 8 F -0.180 7.180 9 C -0.132 4.132 10 C -0.099 4.099 11 C -0.143 4.143 12 C -0.146 4.146 13 C -0.143 4.143 14 C -0.140 4.140 15 C -0.136 4.136 16 C 0.045 3.955 17 H 0.136 0.864 18 C -0.179 4.179 19 C 0.070 3.930 20 N -0.350 5.350 21 C -0.370 4.370 22 H 0.100 0.900 23 C -0.262 4.262 24 N -0.603 5.603 25 Si 0.811 3.189 26 H -0.189 1.189 27 H -0.213 1.213 28 H -0.222 1.222 29 C -0.003 4.003 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.154 0.846 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.039 0.961 45 H 0.012 0.988 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.295 -19.260 -19.158 29.051 hybrid contribution 0.560 1.446 0.743 1.720 sum -9.735 -17.814 -18.415 27.409 Atomic orbital electron populations 1.22266 0.94065 1.04083 1.02525 1.22109 0.95917 0.79738 1.05461 1.48100 1.64359 1.15334 1.04306 1.21487 0.78212 0.86874 0.86640 1.90778 1.44940 1.19445 1.87515 1.21816 0.83019 1.00547 0.89054 0.84405 1.92857 1.46910 1.92792 1.85460 1.20963 1.01608 0.97208 0.93391 1.19682 0.95935 0.99540 0.94703 1.21238 0.99296 0.99857 0.93872 1.21402 0.97884 0.97474 0.97865 1.21523 0.93966 0.99067 0.99696 1.21483 1.00502 0.99060 0.92994 1.21322 0.95805 0.97059 0.99391 1.22201 0.94586 0.93126 0.85569 0.86375 1.23023 0.97082 0.98204 0.99628 1.20750 0.85811 0.91267 0.95178 1.44631 1.08508 1.34012 1.47803 1.19493 0.96008 1.05054 1.16401 0.90031 1.25725 0.96277 1.02706 1.01529 1.70209 1.06162 1.43191 1.40716 0.84944 0.77835 0.78279 0.77866 1.18852 1.21330 1.22186 1.22059 0.94150 0.90999 0.93064 0.92167 0.88408 0.93038 0.88256 0.88015 0.87955 0.90794 0.86800 0.84617 0.83849 0.83503 0.84044 0.92662 0.89719 0.96147 0.98797 0.94373 0.94018 0.95218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.07 71.98 0.72 -1.37 16 2 C 0.09 1.36 5.69 86.38 0.49 1.85 16 3 N -0.59 -15.77 2.57 -789.19 -2.03 -17.80 16 4 C 0.48 14.80 6.31 87.66 0.55 15.35 16 5 O -0.55 -23.06 12.65 -3.02 -0.04 -23.10 16 6 C 0.09 2.13 3.15 29.85 0.09 2.23 16 7 H 0.14 2.05 5.31 -2.38 -0.01 2.04 16 8 F -0.20 -5.33 16.76 44.97 0.75 -4.57 16 9 C -0.09 -2.06 4.83 29.85 0.14 -1.91 16 10 C -0.10 -1.87 5.00 -19.86 -0.10 -1.97 16 11 C -0.12 -2.45 9.56 22.27 0.21 -2.24 16 12 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 13 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 14 C -0.12 -1.52 10.05 22.27 0.22 -1.29 16 15 C -0.12 -1.72 9.70 22.27 0.22 -1.50 16 16 C 0.15 5.23 3.56 46.55 0.17 5.40 16 17 H 0.12 3.61 7.92 -2.39 -0.02 3.59 16 18 C -0.14 -5.83 6.32 31.78 0.20 -5.62 16 19 C 0.20 10.59 5.37 86.73 0.47 11.05 16 20 N -0.62 -34.65 3.40 -691.01 -2.35 -37.00 16 21 C -0.24 -14.31 10.28 84.04 0.86 -13.45 16 22 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 23 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 24 N -0.95 -60.35 10.31 21.65 0.22 -60.13 16 25 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 29 C 0.12 5.51 6.59 87.02 0.57 6.09 16 30 H 0.06 0.71 7.73 -2.39 -0.02 0.69 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 1.14 6.23 -2.39 -0.01 1.12 16 34 H 0.10 1.31 7.99 -2.39 -0.02 1.29 16 35 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 36 H 0.07 1.98 7.99 -2.39 -0.02 1.96 16 37 H 0.11 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.14 1.12 8.06 -2.92 -0.02 1.10 16 40 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 42 H 0.05 2.49 6.25 -2.39 -0.01 2.48 16 43 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.02 1.18 7.38 -2.39 -0.02 1.17 16 45 H -0.01 -0.39 7.51 -2.39 -0.02 -0.41 16 46 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 47 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 48 H 0.03 1.47 5.56 -2.39 -0.01 1.46 16 Total: -1.00 -80.36 385.57 5.28 -75.07 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.95 Total: 12.06 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.74 Total: 5.72 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.15 Total: -114.92 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.75 Total: -4.57 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -80.36 5.28 -75.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318492573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.114 kcal (2) G-P(sol) polarization free energy of solvation -80.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds