Wall clock time and date at job start Tue Mar 31 2020 18:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 120.00069 * 2 1 4 4 H 1.08005 * 120.00351 * 208.41068 * 3 2 1 5 5 C 1.38812 * 120.00018 * 28.41202 * 3 2 1 6 6 N 1.31616 * 119.99957 * 7.74224 * 5 3 2 7 7 Si 1.86805 * 120.00032 * 187.74655 * 5 3 2 8 8 H 1.48500 * 109.47144 * 59.99846 * 7 5 3 9 9 H 1.48498 * 109.46868 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46688 * 299.99557 * 7 5 3 11 11 C 1.46494 * 120.00263 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47300 * 270.00168 * 11 2 1 13 13 N 1.46499 * 109.47019 * 179.97438 * 12 11 2 14 14 C 1.46501 * 120.00229 * 269.99509 * 13 12 11 15 15 C 1.34778 * 119.99903 * 90.00416 * 13 12 11 16 16 O 1.21279 * 120.00127 * 5.34308 * 15 13 12 17 17 C 1.50697 * 120.00162 * 185.33882 * 15 13 12 18 18 C 1.50707 * 112.84655 * 66.59944 * 17 15 13 19 19 C 1.38238 * 119.97272 * 238.34703 * 18 17 15 20 20 C 1.38199 * 120.02714 * 179.97438 * 19 18 17 21 21 C 1.38458 * 119.97214 * 359.97438 * 20 19 18 22 22 F 1.35107 * 120.02574 * 179.97438 * 21 20 19 23 23 C 1.38453 * 119.94985 * 359.97438 * 21 20 19 24 24 C 1.38198 * 119.97305 * 0.02562 * 23 21 20 25 25 C 1.53782 * 113.61856 * 197.79276 * 17 15 13 26 26 C 1.53951 * 87.01630 * 89.23098 * 25 17 15 27 27 C 1.53775 * 113.61669 * 295.40404 * 17 15 13 28 28 H 1.08997 * 109.47612 * 274.22587 * 1 2 3 29 29 H 1.09000 * 109.47215 * 34.22736 * 1 2 3 30 30 H 1.08998 * 109.46956 * 154.21940 * 1 2 3 31 31 H 0.97003 * 120.00258 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.47646 * 149.99888 * 11 2 1 33 33 H 1.09005 * 109.47511 * 30.00050 * 11 2 1 34 34 H 1.09003 * 109.46643 * 59.99980 * 12 11 2 35 35 H 1.08998 * 109.47144 * 299.99810 * 12 11 2 36 36 H 1.08996 * 109.47739 * 265.43320 * 14 13 12 37 37 H 1.09006 * 109.46715 * 25.43739 * 14 13 12 38 38 H 1.09000 * 109.46987 * 145.43028 * 14 13 12 39 39 H 1.07999 * 119.99186 * 359.97438 * 19 18 17 40 40 H 1.08001 * 120.01896 * 180.27170 * 20 19 18 41 41 H 1.08004 * 120.01438 * 180.02562 * 23 21 20 42 42 H 1.08004 * 119.98789 * 180.02562 * 24 23 21 43 43 H 1.08995 * 113.61542 * 203.75405 * 25 17 15 44 44 H 1.09001 * 113.61171 * 334.65491 * 25 17 15 45 45 H 1.08998 * 113.53982 * 270.81168 * 26 25 17 46 46 H 1.09006 * 113.74102 * 139.94943 * 26 25 17 47 47 H 1.09000 * 113.61873 * 25.34676 * 27 17 15 48 48 H 1.09007 * 113.61822 * 156.16217 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1321 1.2423 -0.4450 5 6 1.5810 2.3157 0.5720 6 7 0.4555 2.2160 1.2469 7 14 2.4132 3.9775 0.3837 8 1 2.5168 4.3187 -1.0578 9 1 1.6110 5.0145 1.0809 10 1 3.7729 3.9202 0.9780 11 6 2.1975 -1.2686 0.0006 12 6 2.4525 -1.7097 1.4433 13 7 3.1845 -2.9787 1.4438 14 6 2.4516 -4.2472 1.4446 15 6 4.5323 -2.9792 1.4437 16 8 5.1391 -1.9337 1.5410 17 6 5.2853 -4.2789 1.3228 18 6 5.0999 -4.9400 -0.0188 19 6 4.5779 -6.2179 -0.0928 20 6 4.4069 -6.8250 -1.3225 21 6 4.7582 -6.1525 -2.4807 22 9 4.5919 -6.7451 -3.6834 23 6 5.2799 -4.8722 -2.4054 24 6 5.4499 -4.2672 -1.1746 25 6 6.7553 -4.1827 1.7641 26 6 6.2692 -4.5370 3.1812 27 6 5.0697 -5.2289 2.5126 28 1 -0.3634 0.0757 1.0248 29 1 -0.3634 0.8497 -0.5780 30 1 -0.3633 -0.9254 -0.4470 31 1 0.0579 3.0055 1.6463 32 1 3.1499 -1.1386 -0.5133 33 1 1.6085 -2.0286 -0.5129 34 1 1.5000 -1.8399 1.9571 35 1 3.0415 -0.9499 1.9568 36 1 2.3408 -4.6023 2.4691 37 1 1.4661 -4.0977 1.0033 38 1 3.0024 -4.9854 0.8617 39 1 4.3037 -6.7422 0.8107 40 1 3.9950 -7.8217 -1.3804 41 1 5.5538 -4.3465 -3.3083 42 1 5.8565 -3.2683 -1.1157 43 1 7.3956 -4.9441 1.3189 44 1 7.1708 -3.1782 1.6824 45 1 5.9947 -3.6669 3.7775 46 1 6.9287 -5.2232 3.7126 47 1 4.1263 -5.0680 3.0344 48 1 5.2468 -6.2772 2.2722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320029445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:29 Heat of formation + Delta-G solvation = 0.597126 kcal Electronic energy + Delta-G solvation = -29867.070516 eV Core-core repulsion = 25838.441376 eV Total energy + Delta-G solvation = -4028.629140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.05863 -41.30607 -38.77478 -37.37774 -35.93555 -34.84484 -31.53845 -31.42842 -31.01888 -28.74039 -26.85998 -25.97633 -25.84110 -25.61537 -23.57042 -22.99875 -22.02173 -21.01771 -20.08734 -18.36172 -18.01192 -17.03610 -16.67667 -16.43410 -16.00475 -15.86554 -15.73482 -15.14285 -14.92066 -14.55389 -14.35439 -13.85373 -13.62727 -13.53427 -13.45767 -13.13587 -13.04723 -12.72280 -12.64327 -12.36317 -12.32064 -12.26045 -11.97200 -11.76364 -11.30696 -11.25157 -11.00806 -10.84010 -10.78607 -10.66274 -10.50640 -10.43953 -10.11782 -9.96426 -9.74980 -9.57490 -9.31990 -8.66899 -8.55025 -8.32283 -6.64746 -5.69506 -3.20558 0.88142 1.00126 2.80313 3.21601 3.34725 3.44508 3.47554 3.50409 4.04264 4.23015 4.39662 4.43529 4.50156 4.56032 4.61407 4.67549 4.72180 5.01602 5.18816 5.19530 5.27132 5.39368 5.45232 5.48339 5.55520 5.67612 5.69481 5.70562 5.76036 5.78427 5.85973 5.88677 5.92702 5.97375 6.03610 6.20702 6.27319 6.28656 6.33201 6.64715 6.65042 6.74690 6.81461 7.08610 7.35410 7.70728 7.73435 7.87088 8.44128 8.49122 9.28515 9.88877 10.40003 11.35199 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.003456 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.568704 B = 8100.844221 C = 8968.250163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.254 4.254 4 H 0.066 0.934 5 C 0.007 3.993 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.146 3.854 12 C 0.092 3.908 13 N -0.604 5.604 14 C 0.069 3.931 15 C 0.536 3.464 16 O -0.526 6.526 17 C -0.067 4.067 18 C -0.069 4.069 19 C -0.090 4.090 20 C -0.152 4.152 21 C 0.094 3.906 22 F -0.142 7.142 23 C -0.146 4.146 24 C -0.076 4.076 25 C -0.113 4.113 26 C -0.140 4.140 27 C -0.132 4.132 28 H 0.031 0.969 29 H 0.041 0.959 30 H -0.004 1.004 31 H 0.253 0.747 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.372 -22.243 -0.193 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.384 4.384 4 H 0.084 0.916 5 C -0.191 4.191 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.207 1.207 11 C 0.018 3.982 12 C -0.032 4.032 13 N -0.337 5.337 14 C -0.074 4.074 15 C 0.322 3.678 16 O -0.402 6.402 17 C -0.071 4.071 18 C -0.069 4.069 19 C -0.108 4.108 20 C -0.171 4.171 21 C 0.075 3.925 22 F -0.120 7.120 23 C -0.165 4.165 24 C -0.094 4.094 25 C -0.150 4.150 26 C -0.177 4.177 27 C -0.169 4.169 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.526 -21.527 -0.118 23.154 hybrid contribution 0.123 0.792 -0.261 0.843 sum 8.649 -20.734 -0.379 22.469 Atomic orbital electron populations 1.20818 0.82633 0.95489 0.99321 1.43880 1.01770 1.00561 1.85788 1.19151 1.01562 0.86498 1.31218 0.91626 1.25159 0.97744 0.98917 0.97328 1.70007 1.19812 1.28352 1.37134 0.86339 0.78967 0.83601 0.77688 1.20999 1.21610 1.20732 1.21102 0.95900 0.88183 0.93055 1.22650 0.95465 0.83169 1.01876 1.47952 1.05331 1.07890 1.72541 1.22046 0.97870 0.86256 1.01248 1.19621 0.82266 0.89197 0.76726 1.90732 1.67578 1.32860 1.49021 1.20938 0.98843 0.94693 0.92580 1.19433 0.99475 0.94365 0.93670 1.20925 0.98212 0.94299 0.97366 1.21089 1.03441 1.01216 0.91328 1.17746 1.01672 0.92493 0.80584 1.91501 1.93434 1.83750 1.43350 1.21168 1.01853 0.93987 0.99457 1.20965 0.97506 1.00082 0.90818 1.22891 0.92982 1.03578 0.95574 1.22845 0.97496 1.00767 0.96630 1.23186 1.00103 0.98517 0.95133 0.95080 0.94070 0.98527 0.93706 0.93812 0.94846 0.91463 0.89526 0.92914 0.90973 0.90849 0.84471 0.84654 0.84558 0.84733 0.89414 0.89449 0.89781 0.90905 0.90325 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 9.02 59.84 0.54 4.56 16 2 N -0.60 -15.47 2.91 -181.12 -0.53 -16.00 16 3 C -0.25 -7.26 9.61 -15.06 -0.14 -7.41 16 4 H 0.07 1.88 7.84 -52.48 -0.41 1.47 16 5 C 0.01 0.20 5.19 -17.43 -0.09 0.11 16 6 N -0.91 -26.78 10.77 55.49 0.60 -26.19 16 7 Si 0.90 22.55 29.56 -169.99 -5.03 17.53 16 8 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 C 0.15 3.16 6.03 -4.04 -0.02 3.14 16 12 C 0.09 1.83 5.75 -4.04 -0.02 1.80 16 13 N -0.60 -9.44 2.87 -181.57 -0.52 -9.96 16 14 C 0.07 0.78 9.09 59.85 0.54 1.33 16 15 C 0.54 8.57 6.09 -10.99 -0.07 8.50 16 16 O -0.53 -10.74 15.51 5.56 0.09 -10.65 16 17 C -0.07 -0.77 0.47 -156.00 -0.07 -0.84 16 18 C -0.07 -0.73 3.91 -104.62 -0.41 -1.14 16 19 C -0.09 -0.76 7.24 -39.60 -0.29 -1.05 16 20 C -0.15 -1.34 10.03 -39.51 -0.40 -1.74 16 21 C 0.09 1.00 7.30 -39.42 -0.29 0.71 16 22 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 23 C -0.15 -1.59 10.03 -39.52 -0.40 -1.98 16 24 C -0.08 -0.88 9.40 -39.60 -0.37 -1.25 16 25 C -0.11 -1.20 7.09 -25.83 -0.18 -1.38 16 26 C -0.14 -1.34 7.81 -25.83 -0.20 -1.54 16 27 C -0.13 -1.14 5.66 -25.92 -0.15 -1.29 16 28 H 0.03 0.82 7.30 -51.93 -0.38 0.44 16 29 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 30 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.04 1.00 8.04 -51.93 -0.42 0.58 16 33 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 34 H 0.07 1.30 8.07 -51.93 -0.42 0.89 16 35 H 0.09 2.05 7.36 -51.93 -0.38 1.66 16 36 H 0.05 0.50 6.99 -51.93 -0.36 0.14 16 37 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 38 H 0.07 0.72 3.63 -51.93 -0.19 0.53 16 39 H 0.14 0.82 6.01 -52.49 -0.32 0.51 16 40 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 42 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 43 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 44 H 0.09 1.12 7.34 -51.93 -0.38 0.74 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.69 6.03 -51.93 -0.31 0.37 16 48 H 0.09 0.59 6.37 -51.93 -0.33 0.26 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -32.71 383.05 -8.79 -41.50 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.19 Total: -0.97 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.02 Total: 0.53 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.45 Total: -52.14 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.71 -8.79 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320029445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.093 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds