Wall clock time and date at job start Tue Mar 31 2020 18:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 120.00069 * 2 1 4 4 H 1.08005 * 120.00351 * 208.41068 * 3 2 1 5 5 C 1.38812 * 120.00018 * 28.41202 * 3 2 1 6 6 N 1.31616 * 119.99957 * 7.74224 * 5 3 2 7 7 Si 1.86805 * 120.00032 * 187.74655 * 5 3 2 8 8 H 1.48500 * 109.47144 * 59.99846 * 7 5 3 9 9 H 1.48498 * 109.46868 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46688 * 299.99557 * 7 5 3 11 11 C 1.46494 * 120.00263 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47300 * 270.00168 * 11 2 1 13 13 N 1.46499 * 109.47019 * 179.97438 * 12 11 2 14 14 C 1.46501 * 120.00229 * 269.99509 * 13 12 11 15 15 C 1.34778 * 119.99903 * 90.00416 * 13 12 11 16 16 O 1.21279 * 120.00127 * 5.34308 * 15 13 12 17 17 C 1.50697 * 120.00162 * 185.33882 * 15 13 12 18 18 C 1.50707 * 112.84655 * 66.59944 * 17 15 13 19 19 C 1.38238 * 119.97272 * 238.34703 * 18 17 15 20 20 C 1.38199 * 120.02714 * 179.97438 * 19 18 17 21 21 C 1.38458 * 119.97214 * 359.97438 * 20 19 18 22 22 F 1.35107 * 120.02574 * 179.97438 * 21 20 19 23 23 C 1.38453 * 119.94985 * 359.97438 * 21 20 19 24 24 C 1.38198 * 119.97305 * 0.02562 * 23 21 20 25 25 C 1.53782 * 113.61856 * 197.79276 * 17 15 13 26 26 C 1.53951 * 87.01630 * 89.23098 * 25 17 15 27 27 C 1.53775 * 113.61669 * 295.40404 * 17 15 13 28 28 H 1.08997 * 109.47612 * 274.22587 * 1 2 3 29 29 H 1.09000 * 109.47215 * 34.22736 * 1 2 3 30 30 H 1.08998 * 109.46956 * 154.21940 * 1 2 3 31 31 H 0.97003 * 120.00258 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.47646 * 149.99888 * 11 2 1 33 33 H 1.09005 * 109.47511 * 30.00050 * 11 2 1 34 34 H 1.09003 * 109.46643 * 59.99980 * 12 11 2 35 35 H 1.08998 * 109.47144 * 299.99810 * 12 11 2 36 36 H 1.08996 * 109.47739 * 265.43320 * 14 13 12 37 37 H 1.09006 * 109.46715 * 25.43739 * 14 13 12 38 38 H 1.09000 * 109.46987 * 145.43028 * 14 13 12 39 39 H 1.07999 * 119.99186 * 359.97438 * 19 18 17 40 40 H 1.08001 * 120.01896 * 180.27170 * 20 19 18 41 41 H 1.08004 * 120.01438 * 180.02562 * 23 21 20 42 42 H 1.08004 * 119.98789 * 180.02562 * 24 23 21 43 43 H 1.08995 * 113.61542 * 203.75405 * 25 17 15 44 44 H 1.09001 * 113.61171 * 334.65491 * 25 17 15 45 45 H 1.08998 * 113.53982 * 270.81168 * 26 25 17 46 46 H 1.09006 * 113.74102 * 139.94943 * 26 25 17 47 47 H 1.09000 * 113.61873 * 25.34676 * 27 17 15 48 48 H 1.09007 * 113.61822 * 156.16217 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1321 1.2423 -0.4450 5 6 1.5810 2.3157 0.5720 6 7 0.4555 2.2160 1.2469 7 14 2.4132 3.9775 0.3837 8 1 2.5168 4.3187 -1.0578 9 1 1.6110 5.0145 1.0809 10 1 3.7729 3.9202 0.9780 11 6 2.1975 -1.2686 0.0006 12 6 2.4525 -1.7097 1.4433 13 7 3.1845 -2.9787 1.4438 14 6 2.4516 -4.2472 1.4446 15 6 4.5323 -2.9792 1.4437 16 8 5.1391 -1.9337 1.5410 17 6 5.2853 -4.2789 1.3228 18 6 5.0999 -4.9400 -0.0188 19 6 4.5779 -6.2179 -0.0928 20 6 4.4069 -6.8250 -1.3225 21 6 4.7582 -6.1525 -2.4807 22 9 4.5919 -6.7451 -3.6834 23 6 5.2799 -4.8722 -2.4054 24 6 5.4499 -4.2672 -1.1746 25 6 6.7553 -4.1827 1.7641 26 6 6.2692 -4.5370 3.1812 27 6 5.0697 -5.2289 2.5126 28 1 -0.3634 0.0757 1.0248 29 1 -0.3634 0.8497 -0.5780 30 1 -0.3633 -0.9254 -0.4470 31 1 0.0579 3.0055 1.6463 32 1 3.1499 -1.1386 -0.5133 33 1 1.6085 -2.0286 -0.5129 34 1 1.5000 -1.8399 1.9571 35 1 3.0415 -0.9499 1.9568 36 1 2.3408 -4.6023 2.4691 37 1 1.4661 -4.0977 1.0033 38 1 3.0024 -4.9854 0.8617 39 1 4.3037 -6.7422 0.8107 40 1 3.9950 -7.8217 -1.3804 41 1 5.5538 -4.3465 -3.3083 42 1 5.8565 -3.2683 -1.1157 43 1 7.3956 -4.9441 1.3189 44 1 7.1708 -3.1782 1.6824 45 1 5.9947 -3.6669 3.7775 46 1 6.9287 -5.2232 3.7126 47 1 4.1263 -5.0680 3.0344 48 1 5.2468 -6.2772 2.2722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320029445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:28 Heat of formation + Delta-G solvation = -17.434439 kcal Electronic energy + Delta-G solvation = -29867.852423 eV Core-core repulsion = 25838.441376 eV Total energy + Delta-G solvation = -4029.411048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.88557 -42.29271 -39.80307 -38.43276 -37.61530 -36.43103 -33.50050 -32.19617 -31.95277 -30.38271 -27.95321 -27.86946 -26.91405 -26.67420 -25.09143 -23.83969 -22.94559 -22.54042 -21.46927 -19.46506 -18.87561 -18.76720 -17.98421 -17.41464 -17.19175 -16.94640 -16.76029 -16.57326 -16.03293 -15.92400 -15.44584 -15.36663 -15.05506 -14.65801 -14.57835 -14.37467 -14.10436 -14.00977 -13.95133 -13.64467 -13.53321 -13.20481 -13.04237 -12.96659 -12.80928 -12.77081 -12.70110 -12.47229 -12.14345 -12.07290 -12.03530 -11.84286 -11.64027 -11.45929 -11.25798 -10.80104 -10.71057 -10.08568 -9.75039 -9.48553 -8.73752 -7.88942 -5.42873 0.07534 0.24518 1.40880 1.43427 1.49985 1.58422 2.00357 2.47059 2.53696 3.25446 3.26530 3.40635 3.50719 3.57557 3.65627 3.76935 3.82585 3.92543 3.96251 4.11776 4.28422 4.33942 4.39826 4.42991 4.49140 4.57758 4.68507 4.77569 4.80236 4.82491 4.90438 4.93300 4.95397 4.99125 5.05077 5.10601 5.13671 5.15209 5.15932 5.25040 5.27103 5.44879 5.49032 5.55189 5.61772 5.68465 5.88621 6.30829 6.46811 7.11764 7.20079 7.79801 8.23970 9.13141 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.003456 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.568704 B = 8100.844221 C = 8968.250163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.614 5.614 3 C -0.270 4.270 4 H 0.053 0.947 5 C -0.040 4.040 6 N -0.930 5.930 7 Si 0.964 3.036 8 H -0.276 1.276 9 H -0.285 1.285 10 H -0.283 1.283 11 C 0.153 3.847 12 C 0.112 3.888 13 N -0.604 5.604 14 C 0.062 3.938 15 C 0.529 3.471 16 O -0.585 6.585 17 C -0.066 4.066 18 C -0.073 4.073 19 C -0.076 4.076 20 C -0.139 4.139 21 C 0.081 3.919 22 F -0.148 7.148 23 C -0.156 4.156 24 C -0.096 4.096 25 C -0.116 4.116 26 C -0.140 4.140 27 C -0.115 4.115 28 H 0.011 0.989 29 H 0.015 0.985 30 H 0.035 0.965 31 H 0.251 0.749 32 H 0.021 0.979 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.177 0.823 40 H 0.167 0.833 41 H 0.136 0.864 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.922 -26.219 0.264 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.401 4.401 4 H 0.070 0.930 5 C -0.236 4.236 6 N -0.576 5.576 7 Si 0.791 3.209 8 H -0.201 1.201 9 H -0.210 1.210 10 H -0.209 1.209 11 C 0.026 3.974 12 C -0.013 4.013 13 N -0.336 5.336 14 C -0.079 4.079 15 C 0.318 3.682 16 O -0.465 6.465 17 C -0.069 4.069 18 C -0.074 4.074 19 C -0.093 4.093 20 C -0.158 4.158 21 C 0.062 3.938 22 F -0.127 7.127 23 C -0.175 4.175 24 C -0.114 4.114 25 C -0.154 4.154 26 C -0.177 4.177 27 C -0.152 4.152 28 H 0.029 0.971 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.194 0.806 40 H 0.184 0.816 41 H 0.154 0.846 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.119 0.881 47 H 0.102 0.898 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.070 -25.563 0.330 26.808 hybrid contribution 0.309 1.978 -0.462 2.055 sum 8.379 -23.585 -0.133 25.029 Atomic orbital electron populations 1.20610 0.82017 0.96279 0.97974 1.44067 1.02403 1.01196 1.86165 1.19298 1.01333 0.88171 1.31282 0.92952 1.25831 0.98462 1.01982 0.97309 1.70145 1.20732 1.28928 1.37778 0.85410 0.77788 0.79744 0.77913 1.20135 1.21009 1.20925 1.21081 0.94818 0.87280 0.94234 1.21992 0.95218 0.84415 0.99716 1.47947 1.05525 1.07983 1.72137 1.22385 0.97820 0.84182 1.03537 1.20531 0.82262 0.90394 0.75055 1.90703 1.68776 1.35571 1.51449 1.20836 0.98545 0.92942 0.94596 1.19419 1.00219 0.95411 0.92342 1.21250 0.96358 0.92946 0.98737 1.21440 1.01829 1.02141 0.90354 1.17962 1.02200 0.92447 0.81160 1.91486 1.93532 1.83731 1.43952 1.21191 1.02410 0.94685 0.99211 1.20856 0.98996 0.99490 0.92044 1.22963 0.92954 1.02462 0.96996 1.22811 0.98690 1.00468 0.95736 1.23280 0.99777 0.99620 0.92504 0.97060 0.96627 0.94638 0.93952 0.96084 0.92011 0.90715 0.94380 0.90173 0.90404 0.88791 0.80610 0.81581 0.84636 0.87375 0.86918 0.92978 0.92661 0.88112 0.89783 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.77 9.02 127.77 1.15 9.92 16 2 N -0.61 -32.61 2.91 -726.95 -2.12 -34.73 16 3 C -0.27 -16.02 9.61 84.03 0.81 -15.21 16 4 H 0.05 3.17 7.84 -2.91 -0.02 3.15 16 5 C -0.04 -2.33 5.19 84.86 0.44 -1.89 16 6 N -0.93 -56.11 10.77 21.65 0.23 -55.88 16 7 Si 0.96 47.53 29.56 68.60 2.03 49.56 16 8 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 9 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 11 C 0.15 6.76 6.03 86.38 0.52 7.28 16 12 C 0.11 4.55 5.75 86.38 0.50 5.05 16 13 N -0.60 -18.60 2.87 -846.75 -2.43 -21.04 16 14 C 0.06 1.19 9.09 127.77 1.16 2.35 16 15 C 0.53 17.31 6.09 87.66 0.53 17.84 16 16 O -0.59 -25.85 15.51 -3.03 -0.05 -25.90 16 17 C -0.07 -1.41 0.47 -53.15 -0.02 -1.43 16 18 C -0.07 -1.38 3.91 -19.86 -0.08 -1.46 16 19 C -0.08 -0.90 7.24 22.26 0.16 -0.74 16 20 C -0.14 -1.82 10.03 22.31 0.22 -1.59 16 21 C 0.08 1.55 7.30 22.37 0.16 1.71 16 22 F -0.15 -3.10 17.27 44.97 0.78 -2.33 16 23 C -0.16 -3.35 10.03 22.31 0.22 -3.13 16 24 C -0.10 -2.24 9.40 22.26 0.21 -2.03 16 25 C -0.12 -2.40 7.09 31.18 0.22 -2.18 16 26 C -0.14 -2.39 7.81 31.18 0.24 -2.15 16 27 C -0.11 -1.50 5.66 31.12 0.18 -1.33 16 28 H 0.01 0.60 7.30 -2.39 -0.02 0.58 16 29 H 0.01 0.82 7.51 -2.39 -0.02 0.80 16 30 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 31 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.02 1.00 8.04 -2.39 -0.02 0.99 16 33 H 0.06 2.36 7.86 -2.38 -0.02 2.34 16 34 H 0.07 2.90 8.07 -2.39 -0.02 2.88 16 35 H 0.04 1.91 7.36 -2.39 -0.02 1.89 16 36 H 0.08 1.15 6.99 -2.39 -0.02 1.14 16 37 H 0.08 1.45 8.04 -2.38 -0.02 1.43 16 38 H 0.09 1.41 3.63 -2.39 -0.01 1.40 16 39 H 0.18 0.76 6.01 -2.91 -0.02 0.74 16 40 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.11 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.11 1.75 8.09 -2.39 -0.02 1.73 16 44 H 0.05 1.45 7.34 -2.39 -0.02 1.43 16 45 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.08 1.07 6.03 -2.39 -0.01 1.06 16 48 H 0.14 0.74 6.37 -2.38 -0.02 0.72 16 Total: -1.00 -77.05 383.05 6.04 -71.01 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.96 Total: 8.28 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.63 Total: 11.02 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -4.31 Total: -111.64 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.90 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -77.05 6.04 -71.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320029445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.574 kcal (2) G-P(sol) polarization free energy of solvation -77.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds