Wall clock time and date at job start Tue Mar 31 2020 17:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47478 * 2 1 4 4 N 1.46502 * 109.47142 * 120.00029 * 2 1 3 5 5 C 1.36934 * 119.99885 * 274.99405 * 4 2 1 6 6 H 1.08002 * 120.00347 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99842 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99916 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99923 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47221 * 89.99689 * 9 7 5 11 11 H 1.48498 * 109.47012 * 209.99409 * 9 7 5 12 12 H 1.48496 * 109.47074 * 329.99314 * 9 7 5 13 13 C 1.52997 * 109.46798 * 240.00043 * 2 1 3 14 14 H 1.08997 * 110.89050 * 304.54094 * 13 2 1 15 15 C 1.55160 * 111.00515 * 68.46716 * 13 2 1 16 16 C 1.54336 * 103.01850 * 153.37972 * 15 13 2 17 17 N 1.47024 * 107.26969 * 338.14008 * 16 15 13 18 18 C 1.34771 * 125.64726 * 178.84848 * 17 16 15 19 19 O 1.21287 * 119.99655 * 179.69195 * 18 17 16 20 20 C 1.50689 * 120.00268 * 359.69297 * 18 17 16 21 21 C 1.53002 * 109.47255 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47570 * 180.02562 * 21 20 18 23 23 C 1.38237 * 119.97864 * 89.99813 * 22 21 20 24 24 C 1.38197 * 120.03049 * 180.02562 * 23 22 21 25 25 C 1.38464 * 119.96992 * 0.22549 * 24 23 22 26 26 F 1.35096 * 120.02175 * 179.73265 * 25 24 23 27 27 C 1.38458 * 119.94930 * 359.49622 * 25 24 23 28 28 C 1.38199 * 119.97219 * 0.53059 * 27 25 24 29 29 C 1.47430 * 108.69829 * 358.58548 * 17 16 15 30 30 H 1.09006 * 109.46930 * 294.75424 * 1 2 3 31 31 H 1.09002 * 109.46973 * 54.74312 * 1 2 3 32 32 H 1.08994 * 109.47617 * 174.75357 * 1 2 3 33 33 H 0.97000 * 119.99546 * 95.00126 * 4 2 1 34 34 H 0.97005 * 120.00201 * 180.02562 * 8 7 5 35 35 H 1.09004 * 110.71720 * 271.93560 * 15 13 2 36 36 H 1.08993 * 110.72074 * 35.21299 * 15 13 2 37 37 H 1.08995 * 109.99018 * 218.66367 * 16 15 13 38 38 H 1.09005 * 109.78042 * 97.49514 * 16 15 13 39 39 H 1.09004 * 109.47368 * 60.00210 * 20 18 17 40 40 H 1.08993 * 109.47512 * 299.99690 * 20 18 17 41 41 H 1.08999 * 109.47321 * 59.99709 * 21 20 18 42 42 H 1.09003 * 109.47077 * 299.99954 * 21 20 18 43 43 H 1.08001 * 119.98457 * 359.97438 * 23 22 21 44 44 H 1.08000 * 120.01396 * 179.97438 * 24 23 22 45 45 H 1.07994 * 120.01177 * 180.25042 * 27 25 24 46 46 H 1.07997 * 119.98618 * 179.69837 * 28 27 25 47 47 H 1.08997 * 110.36190 * 143.19461 * 29 17 16 48 48 H 1.08991 * 110.36569 * 265.40406 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8921 1.0404 2.4243 7 6 2.6114 -0.6620 3.5092 8 7 2.7368 -0.0055 4.6431 9 14 3.0555 -2.4745 3.4253 10 1 4.4884 -2.6168 3.0619 11 1 2.8155 -3.1047 4.7484 12 1 2.2158 -3.1429 2.3991 13 6 2.0399 -0.7212 -1.2492 14 1 1.6251 -1.7271 -1.3138 15 6 1.7240 0.0949 -2.5305 16 6 2.8291 -0.3540 -3.5099 17 7 3.9376 -0.8854 -2.7034 18 6 5.0852 -1.3998 -3.1878 19 8 5.9370 -1.8058 -2.4257 20 6 5.3102 -1.4705 -4.6761 21 6 6.6807 -2.0906 -4.9559 22 6 6.9060 -2.1608 -6.4444 23 6 7.5067 -1.1040 -7.1026 24 6 7.7134 -1.1670 -8.4676 25 6 7.3141 -2.2874 -9.1766 26 9 7.5107 -2.3478 -10.5118 27 6 6.7177 -3.3476 -8.5154 28 6 6.5117 -3.2820 -7.1504 29 6 3.5884 -0.7565 -1.2768 30 1 -0.3633 0.4303 0.9333 31 1 -0.3633 0.5932 -0.8392 32 1 -0.3634 -1.0233 -0.0940 33 1 2.2490 -1.6318 1.1525 34 1 3.0601 -0.4627 5.4351 35 1 0.7369 -0.1598 -2.9163 36 1 1.7986 1.1645 -2.3346 37 1 3.1734 0.4964 -4.0984 38 1 2.4441 -1.1321 -4.1691 39 1 5.2736 -0.4658 -5.0973 40 1 4.5335 -2.0842 -5.1322 41 1 6.7178 -3.0952 -4.5347 42 1 7.4572 -1.4765 -4.4999 43 1 7.8140 -0.2284 -6.5501 44 1 8.1824 -0.3411 -8.9817 45 1 6.4096 -4.2236 -9.0668 46 1 6.0421 -4.1069 -6.6352 47 1 3.9583 -1.6152 -0.7167 48 1 3.9979 0.1672 -0.8681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325418310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:29 Heat of formation + Delta-G solvation = -54.455189 kcal Electronic energy + Delta-G solvation = -27801.860186 eV Core-core repulsion = 23770.843798 eV Total energy + Delta-G solvation = -4031.016388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.26044 -40.25078 -39.49999 -37.94376 -35.37612 -34.14662 -32.49898 -31.56097 -30.90575 -29.86144 -28.95118 -28.29362 -25.16292 -23.72263 -23.47817 -23.05868 -21.51730 -21.27038 -19.88561 -19.12689 -18.07103 -17.67738 -17.17656 -16.86156 -16.23234 -15.96685 -15.74276 -15.53765 -14.95551 -14.59542 -14.42640 -14.05588 -14.00110 -13.88147 -13.66205 -13.33733 -13.27001 -12.89561 -12.65127 -12.56187 -12.39973 -12.18708 -12.05657 -11.83909 -11.72666 -11.71350 -11.58779 -11.20690 -11.01935 -10.86069 -10.64038 -10.59970 -10.27337 -10.00222 -9.82516 -9.57821 -9.54157 -8.94699 -8.92841 -8.60527 -7.28084 -5.76650 -3.12416 0.70273 0.80079 2.62256 2.93405 3.18923 3.39478 3.43080 3.48177 3.86182 4.19723 4.28415 4.46263 4.55177 4.59338 4.60479 4.70823 4.73409 4.83512 4.86582 4.96237 5.00744 5.17589 5.24208 5.40272 5.42011 5.44991 5.54507 5.58105 5.59200 5.65649 5.70205 5.76529 5.80498 5.80740 5.87646 5.96677 6.03939 6.15975 6.17176 6.23755 6.28531 6.38195 6.47116 6.47752 6.74651 6.97075 7.53779 7.98533 8.16133 8.42166 9.20342 9.93196 10.12206 11.41567 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.002054 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.205671 B =13627.051650 C =14384.796135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.189 3.811 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.106 4.106 14 H 0.079 0.921 15 C -0.124 4.124 16 C 0.101 3.899 17 N -0.620 5.620 18 C 0.523 3.477 19 O -0.540 6.540 20 C -0.129 4.129 21 C -0.067 4.067 22 C -0.089 4.089 23 C -0.087 4.087 24 C -0.151 4.151 25 C 0.090 3.910 26 F -0.142 7.142 27 C -0.151 4.151 28 C -0.087 4.087 29 C 0.117 3.883 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.077 0.923 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -2.825 -29.542 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.392 5.392 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.126 4.126 14 H 0.098 0.902 15 C -0.162 4.162 16 C -0.022 4.022 17 N -0.355 5.355 18 C 0.311 3.689 19 O -0.417 6.417 20 C -0.169 4.169 21 C -0.104 4.104 22 C -0.089 4.089 23 C -0.105 4.105 24 C -0.170 4.170 25 C 0.071 3.929 26 F -0.121 7.121 27 C -0.170 4.170 28 C -0.105 4.105 29 C -0.005 4.005 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.151 0.849 47 H 0.096 0.904 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.546 -2.894 -29.020 29.516 hybrid contribution 0.222 -1.313 -0.231 1.352 sum 4.768 -4.208 -29.251 29.935 Atomic orbital electron populations 1.22412 0.98586 1.00524 1.00930 1.20137 0.92084 0.95455 0.84357 0.92389 1.42793 1.79826 1.09382 1.07153 1.19028 1.37044 0.95467 0.85660 0.89191 1.24656 1.01373 0.97403 0.95577 1.69695 1.52568 1.35579 1.00266 0.86603 0.78670 0.86834 0.76743 1.20919 1.21807 1.20389 1.22723 0.94296 1.00110 0.95508 0.90231 1.22670 0.97763 1.01020 0.94746 1.22065 0.87503 0.98211 0.94469 1.48646 1.17007 1.61090 1.08713 1.20287 0.80513 0.77299 0.90773 1.90744 1.42910 1.48003 1.60021 1.21621 0.98947 1.03447 0.92864 1.20363 0.96524 1.03341 0.90211 1.20021 0.98521 0.94159 0.96220 1.20987 0.97659 0.98581 0.93252 1.21167 1.02900 0.97902 0.95040 1.17753 1.01463 0.96253 0.77428 1.91499 1.93210 1.96722 1.30662 1.21162 1.01808 0.98624 0.95432 1.20986 0.98527 0.98048 0.92942 1.22269 0.94792 1.03105 0.80328 0.92102 0.94091 0.93764 0.80693 0.93078 0.89946 0.90145 0.91507 0.91629 0.88868 0.88905 0.89792 0.89752 0.84816 0.84728 0.84749 0.84853 0.90409 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.29 37.16 0.35 -2.27 16 2 C 0.19 3.30 2.42 -67.93 -0.16 3.14 16 3 H 0.06 1.05 8.01 -51.93 -0.42 0.64 16 4 N -0.75 -16.90 4.56 -53.43 -0.24 -17.15 16 5 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.21 13.97 55.49 0.78 -28.44 16 9 Si 0.88 22.31 27.74 -169.99 -4.71 17.60 16 10 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 13 C -0.11 -1.48 2.62 -88.47 -0.23 -1.71 16 14 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.12 -1.23 5.78 -24.89 -0.14 -1.37 16 16 C 0.10 0.91 6.49 -3.06 -0.02 0.89 16 17 N -0.62 -7.95 3.33 -170.52 -0.57 -8.52 16 18 C 0.52 6.94 7.85 -10.99 -0.09 6.85 16 19 O -0.54 -9.55 16.24 5.55 0.09 -9.46 16 20 C -0.13 -1.09 4.87 -27.89 -0.14 -1.23 16 21 C -0.07 -0.57 4.63 -27.88 -0.13 -0.70 16 22 C -0.09 -0.67 5.13 -104.62 -0.54 -1.20 16 23 C -0.09 -0.61 9.70 -39.60 -0.38 -0.99 16 24 C -0.15 -1.09 10.03 -39.51 -0.40 -1.49 16 25 C 0.09 0.74 7.30 -39.42 -0.29 0.45 16 26 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 27 C -0.15 -1.10 10.03 -39.51 -0.40 -1.49 16 28 C -0.09 -0.61 9.70 -39.59 -0.38 -0.99 16 29 C 0.12 1.84 6.03 -2.53 -0.02 1.82 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.52 7.75 -51.93 -0.40 0.12 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.36 8.19 5.66 -40.82 -0.23 7.95 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.78 7.98 -51.93 -0.41 0.37 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 42 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.08 1.42 8.04 -51.93 -0.42 1.01 16 48 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -33.69 396.90 -9.66 -43.35 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.80 Total: 4.92 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.22 Total: -7.02 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.04 Total: -54.10 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.69 -9.66 -43.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325418310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.108 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds