Wall clock time and date at job start Tue Mar 31 2020 17:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47478 * 2 1 4 4 N 1.46502 * 109.47142 * 120.00029 * 2 1 3 5 5 C 1.36934 * 119.99885 * 274.99405 * 4 2 1 6 6 H 1.08002 * 120.00347 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99842 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99916 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99923 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47221 * 89.99689 * 9 7 5 11 11 H 1.48498 * 109.47012 * 209.99409 * 9 7 5 12 12 H 1.48496 * 109.47074 * 329.99314 * 9 7 5 13 13 C 1.52997 * 109.46798 * 240.00043 * 2 1 3 14 14 H 1.08997 * 110.89050 * 304.54094 * 13 2 1 15 15 C 1.55160 * 111.00515 * 68.46716 * 13 2 1 16 16 C 1.54336 * 103.01850 * 153.37972 * 15 13 2 17 17 N 1.47024 * 107.26969 * 338.14008 * 16 15 13 18 18 C 1.34771 * 125.64726 * 178.84848 * 17 16 15 19 19 O 1.21287 * 119.99655 * 179.69195 * 18 17 16 20 20 C 1.50689 * 120.00268 * 359.69297 * 18 17 16 21 21 C 1.53002 * 109.47255 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47570 * 180.02562 * 21 20 18 23 23 C 1.38237 * 119.97864 * 89.99813 * 22 21 20 24 24 C 1.38197 * 120.03049 * 180.02562 * 23 22 21 25 25 C 1.38464 * 119.96992 * 0.22549 * 24 23 22 26 26 F 1.35096 * 120.02175 * 179.73265 * 25 24 23 27 27 C 1.38458 * 119.94930 * 359.49622 * 25 24 23 28 28 C 1.38199 * 119.97219 * 0.53059 * 27 25 24 29 29 C 1.47430 * 108.69829 * 358.58548 * 17 16 15 30 30 H 1.09006 * 109.46930 * 294.75424 * 1 2 3 31 31 H 1.09002 * 109.46973 * 54.74312 * 1 2 3 32 32 H 1.08994 * 109.47617 * 174.75357 * 1 2 3 33 33 H 0.97000 * 119.99546 * 95.00126 * 4 2 1 34 34 H 0.97005 * 120.00201 * 180.02562 * 8 7 5 35 35 H 1.09004 * 110.71720 * 271.93560 * 15 13 2 36 36 H 1.08993 * 110.72074 * 35.21299 * 15 13 2 37 37 H 1.08995 * 109.99018 * 218.66367 * 16 15 13 38 38 H 1.09005 * 109.78042 * 97.49514 * 16 15 13 39 39 H 1.09004 * 109.47368 * 60.00210 * 20 18 17 40 40 H 1.08993 * 109.47512 * 299.99690 * 20 18 17 41 41 H 1.08999 * 109.47321 * 59.99709 * 21 20 18 42 42 H 1.09003 * 109.47077 * 299.99954 * 21 20 18 43 43 H 1.08001 * 119.98457 * 359.97438 * 23 22 21 44 44 H 1.08000 * 120.01396 * 179.97438 * 24 23 22 45 45 H 1.07994 * 120.01177 * 180.25042 * 27 25 24 46 46 H 1.07997 * 119.98618 * 179.69837 * 28 27 25 47 47 H 1.08997 * 110.36190 * 143.19461 * 29 17 16 48 48 H 1.08991 * 110.36569 * 265.40406 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8921 1.0404 2.4243 7 6 2.6114 -0.6620 3.5092 8 7 2.7368 -0.0055 4.6431 9 14 3.0555 -2.4745 3.4253 10 1 4.4884 -2.6168 3.0619 11 1 2.8155 -3.1047 4.7484 12 1 2.2158 -3.1429 2.3991 13 6 2.0399 -0.7212 -1.2492 14 1 1.6251 -1.7271 -1.3138 15 6 1.7240 0.0949 -2.5305 16 6 2.8291 -0.3540 -3.5099 17 7 3.9376 -0.8854 -2.7034 18 6 5.0852 -1.3998 -3.1878 19 8 5.9370 -1.8058 -2.4257 20 6 5.3102 -1.4705 -4.6761 21 6 6.6807 -2.0906 -4.9559 22 6 6.9060 -2.1608 -6.4444 23 6 7.5067 -1.1040 -7.1026 24 6 7.7134 -1.1670 -8.4676 25 6 7.3141 -2.2874 -9.1766 26 9 7.5107 -2.3478 -10.5118 27 6 6.7177 -3.3476 -8.5154 28 6 6.5117 -3.2820 -7.1504 29 6 3.5884 -0.7565 -1.2768 30 1 -0.3633 0.4303 0.9333 31 1 -0.3633 0.5932 -0.8392 32 1 -0.3634 -1.0233 -0.0940 33 1 2.2490 -1.6318 1.1525 34 1 3.0601 -0.4627 5.4351 35 1 0.7369 -0.1598 -2.9163 36 1 1.7986 1.1645 -2.3346 37 1 3.1734 0.4964 -4.0984 38 1 2.4441 -1.1321 -4.1691 39 1 5.2736 -0.4658 -5.0973 40 1 4.5335 -2.0842 -5.1322 41 1 6.7178 -3.0952 -4.5347 42 1 7.4572 -1.4765 -4.4999 43 1 7.8140 -0.2284 -6.5501 44 1 8.1824 -0.3411 -8.9817 45 1 6.4096 -4.2236 -9.0668 46 1 6.0421 -4.1069 -6.6352 47 1 3.9583 -1.6152 -0.7167 48 1 3.9979 0.1672 -0.8681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325418310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:28 Heat of formation + Delta-G solvation = -74.249798 kcal Electronic energy + Delta-G solvation = -27802.718544 eV Core-core repulsion = 23770.843798 eV Total energy + Delta-G solvation = -4031.874746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -49.88173 -41.22050 -40.12317 -39.08933 -36.89271 -34.85826 -34.29157 -32.40504 -32.06767 -30.70838 -30.28065 -29.34079 -26.06080 -25.49255 -23.98796 -23.94574 -22.71236 -22.02040 -21.29436 -20.12175 -19.51055 -18.63543 -18.17311 -17.53738 -17.28041 -16.68475 -16.61362 -16.51004 -16.22041 -15.96597 -15.40448 -15.17210 -14.86561 -14.74019 -14.50988 -14.40473 -14.23871 -14.08657 -13.91251 -13.74733 -13.58623 -13.48442 -13.14404 -12.96704 -12.71376 -12.65337 -12.43526 -12.38685 -12.17428 -12.10476 -11.91306 -11.79546 -11.70787 -11.65161 -11.38864 -11.00664 -10.90303 -10.04787 -9.64030 -9.51702 -9.29922 -8.02211 -5.33283 0.14094 0.29556 1.33930 1.38390 1.43291 1.63329 2.00538 2.46798 2.62382 3.29546 3.31043 3.34594 3.57978 3.70715 3.77590 3.83455 3.95478 3.99149 4.02256 4.13063 4.27630 4.36638 4.37716 4.43868 4.47234 4.53403 4.62133 4.62805 4.76830 4.85488 4.87835 4.91222 5.01858 5.03162 5.05063 5.08420 5.13582 5.18998 5.20854 5.26984 5.29956 5.35355 5.42291 5.61098 5.63614 5.79750 5.94552 6.22738 6.58178 7.09391 7.16423 7.87501 8.03566 9.19528 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.002054 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.205671 B =13627.051650 C =14384.796135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.181 3.819 3 H 0.046 0.954 4 N -0.754 5.754 5 C -0.217 4.217 6 H 0.061 0.939 7 C -0.065 4.065 8 N -0.984 5.984 9 Si 0.945 3.055 10 H -0.289 1.289 11 H -0.296 1.296 12 H -0.252 1.252 13 C -0.096 4.096 14 H 0.086 0.914 15 C -0.114 4.114 16 C 0.097 3.903 17 N -0.620 5.620 18 C 0.514 3.486 19 O -0.596 6.596 20 C -0.115 4.115 21 C -0.062 4.062 22 C -0.090 4.090 23 C -0.089 4.089 24 C -0.154 4.154 25 C 0.071 3.929 26 F -0.152 7.152 27 C -0.154 4.154 28 C -0.088 4.088 29 C 0.116 3.884 30 H 0.028 0.972 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.361 0.639 34 H 0.255 0.745 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.041 0.959 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 -3.545 -33.394 33.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.073 3.927 3 H 0.064 0.936 4 N -0.397 5.397 5 C -0.348 4.348 6 H 0.079 0.921 7 C -0.257 4.257 8 N -0.635 5.635 9 Si 0.774 3.226 10 H -0.216 1.216 11 H -0.223 1.223 12 H -0.176 1.176 13 C -0.116 4.116 14 H 0.105 0.895 15 C -0.153 4.153 16 C -0.024 4.024 17 N -0.353 5.353 18 C 0.305 3.695 19 O -0.477 6.477 20 C -0.154 4.154 21 C -0.099 4.099 22 C -0.091 4.091 23 C -0.107 4.107 24 C -0.173 4.173 25 C 0.052 3.948 26 F -0.131 7.131 27 C -0.173 4.173 28 C -0.106 4.106 29 C -0.007 4.007 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.194 0.806 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.166 0.834 47 H 0.060 0.940 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.051 -3.602 -32.970 33.306 hybrid contribution 0.670 -0.974 0.912 1.493 sum 3.721 -4.576 -32.057 32.595 Atomic orbital electron populations 1.22255 0.96529 1.01566 1.01029 1.20429 0.93377 0.94887 0.84002 0.93581 1.42871 1.80079 1.09427 1.07297 1.19016 1.34158 0.94385 0.87255 0.92138 1.25399 1.02912 1.01863 0.95475 1.69862 1.55144 1.37421 1.01109 0.85546 0.78175 0.81897 0.76984 1.21606 1.22289 1.17609 1.22546 0.92498 1.00835 0.95713 0.89522 1.22720 0.99790 1.00445 0.92299 1.22378 0.85816 1.00085 0.94108 1.48761 1.18029 1.60835 1.07720 1.21235 0.79675 0.76030 0.92548 1.90719 1.44801 1.50439 1.61788 1.21630 0.99468 1.05360 0.88937 1.20251 0.96436 1.02432 0.90827 1.19948 0.99055 0.94681 0.95389 1.21157 0.97298 0.98990 0.93221 1.21349 1.02674 0.98071 0.95205 1.18032 1.02404 0.97140 0.77211 1.91473 1.93399 1.96823 1.31383 1.21348 1.01430 0.98852 0.95651 1.21160 0.98322 0.98278 0.92857 1.22014 0.96202 1.00195 0.82272 0.95242 0.89992 0.92955 0.80625 0.93570 0.86809 0.89886 0.88881 0.88599 0.86416 0.86294 0.90990 0.91074 0.83461 0.83456 0.83426 0.83394 0.93984 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.29 71.98 0.67 -3.87 16 2 C 0.18 6.12 2.42 44.99 0.11 6.22 16 3 H 0.05 1.67 8.01 -2.39 -0.02 1.65 16 4 N -0.75 -34.13 4.56 -322.94 -1.47 -35.61 16 5 C -0.22 -12.24 10.41 84.03 0.87 -11.36 16 6 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 7 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.98 -64.01 13.97 21.65 0.30 -63.71 16 9 Si 0.95 47.22 27.74 68.60 1.90 49.13 16 10 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 11 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 12 H -0.25 -11.30 6.52 99.48 0.65 -10.65 16 13 C -0.10 -2.45 2.62 -9.40 -0.02 -2.48 16 14 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 15 C -0.11 -1.75 5.78 31.79 0.18 -1.56 16 16 C 0.10 1.29 6.49 86.73 0.56 1.86 16 17 N -0.62 -14.61 3.33 -811.78 -2.70 -17.31 16 18 C 0.51 12.93 7.85 87.65 0.69 13.62 16 19 O -0.60 -21.52 16.24 -3.05 -0.05 -21.57 16 20 C -0.11 -1.58 4.87 29.85 0.15 -1.44 16 21 C -0.06 -0.95 4.63 29.85 0.14 -0.81 16 22 C -0.09 -1.15 5.13 -19.86 -0.10 -1.25 16 23 C -0.09 -1.04 9.70 22.26 0.22 -0.82 16 24 C -0.15 -1.93 10.03 22.31 0.22 -1.71 16 25 C 0.07 1.05 7.30 22.38 0.16 1.22 16 26 F -0.15 -2.62 17.27 44.97 0.78 -1.85 16 27 C -0.15 -1.91 10.03 22.31 0.22 -1.69 16 28 C -0.09 -1.02 9.70 22.26 0.22 -0.80 16 29 C 0.12 3.64 6.03 86.85 0.52 4.16 16 30 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.08 1.75 7.75 -2.39 -0.02 1.73 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.36 16.22 5.66 -92.71 -0.52 15.69 16 34 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.27 7.98 -2.39 -0.02 1.25 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.12 1.10 8.14 -2.38 -0.02 1.09 16 40 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 42 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 43 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 45 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 47 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 48 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 Total: -1.00 -78.69 396.90 4.40 -74.29 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.36 Total: 20.78 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 5.28 Total: -4.15 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -3.87 Total: -116.63 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.90 Total: 49.13 kcal Total: -78.69 4.40 -74.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325418310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.040 kcal (2) G-P(sol) polarization free energy of solvation -78.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds