Wall clock time and date at job start Tue Mar 31 2020 17:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47011 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47353 * 119.99952 * 9 7 5 12 12 H 1.48499 * 109.47342 * 239.99965 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 110.88748 * 299.30213 * 13 2 1 15 15 C 1.55158 * 111.00710 * 175.42198 * 13 2 1 16 16 C 1.54365 * 102.92041 * 206.45596 * 15 13 2 17 17 N 1.47028 * 107.29249 * 22.13366 * 16 15 13 18 18 C 1.34779 * 125.64795 * 181.12907 * 17 16 15 19 19 O 1.21278 * 119.99612 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00001 * 359.95901 * 18 17 16 21 21 C 1.53009 * 109.46866 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.46874 * 180.02562 * 21 20 18 23 23 C 1.38248 * 119.96871 * 269.72476 * 22 21 20 24 24 C 1.38198 * 120.01977 * 179.73140 * 23 22 21 25 25 C 1.38456 * 119.97669 * 0.56753 * 24 23 22 26 26 F 1.35105 * 120.02635 * 179.68525 * 25 24 23 27 27 C 1.38462 * 119.94760 * 359.70290 * 25 24 23 28 28 C 1.38195 * 119.97276 * 0.02562 * 27 25 24 29 29 C 1.47425 * 108.70050 * 1.09407 * 17 16 15 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 35 35 H 1.08997 * 110.71506 * 324.78553 * 15 13 2 36 36 H 1.08993 * 110.72114 * 88.06107 * 15 13 2 37 37 H 1.09001 * 109.84582 * 262.72678 * 16 15 13 38 38 H 1.09000 * 109.90660 * 141.57633 * 16 15 13 39 39 H 1.08996 * 109.47295 * 299.99485 * 20 18 17 40 40 H 1.08996 * 109.47179 * 60.00598 * 20 18 17 41 41 H 1.09004 * 109.47023 * 300.00403 * 21 20 18 42 42 H 1.09000 * 109.46541 * 59.99853 * 21 20 18 43 43 H 1.07993 * 119.99003 * 359.97438 * 23 22 21 44 44 H 1.08007 * 120.01154 * 180.25095 * 24 23 22 45 45 H 1.08001 * 120.01171 * 179.97438 * 27 25 24 46 46 H 1.07997 * 119.98435 * 179.97438 * 28 27 25 47 47 H 1.08995 * 110.36760 * 217.03118 * 29 17 16 48 48 H 1.08999 * 110.45924 * 94.75676 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 2.3753 1.6822 4.9211 11 1 1.9299 -0.3594 6.1523 12 1 4.2071 0.2280 5.5606 13 6 2.0400 -0.7213 -1.2492 14 1 1.6996 -1.7566 -1.2663 15 6 3.5866 -0.6427 -1.3444 16 6 3.8456 -0.7620 -2.8615 17 7 2.6095 -0.3602 -3.5487 18 6 2.4212 -0.3478 -4.8832 19 8 1.3549 0.0036 -5.3419 20 6 3.5357 -0.7701 -5.8054 21 6 3.0640 -0.6648 -7.2571 22 6 4.1783 -1.0878 -8.1793 23 6 5.0773 -0.1497 -8.6517 24 6 6.1029 -0.5373 -9.4930 25 6 6.2229 -1.8636 -9.8720 26 9 7.2214 -2.2425 -10.6995 27 6 5.3186 -2.8012 -9.4027 28 6 4.2971 -2.4122 -8.5570 29 6 1.6098 0.0259 -2.5363 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.2493 -2.3958 4.2417 35 1 3.9482 0.3133 -0.9657 36 1 4.0486 -1.4711 -0.8074 37 1 4.0923 -1.7930 -3.1149 38 1 4.6625 -0.1012 -3.1516 39 1 4.3977 -0.1201 -5.6551 40 1 3.8157 -1.8010 -5.5887 41 1 2.2021 -1.3151 -7.4072 42 1 2.7836 0.3659 -7.4741 43 1 4.9804 0.8856 -8.3601 44 1 6.8076 0.1949 -9.8587 45 1 5.4110 -3.8359 -9.6981 46 1 3.5914 -3.1433 -8.1912 47 1 0.6144 -0.2928 -2.8452 48 1 1.6289 1.1035 -2.3736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325418311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:34 Heat of formation + Delta-G solvation = -59.554103 kcal Electronic energy + Delta-G solvation = -27558.627505 eV Core-core repulsion = 23527.390011 eV Total energy + Delta-G solvation = -4031.237493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.23944 -40.24736 -39.48052 -37.87252 -35.23181 -34.15226 -32.47250 -31.54708 -30.70513 -29.78317 -29.11600 -27.45188 -25.29695 -24.09478 -23.46578 -22.83856 -21.54002 -21.32692 -19.65983 -19.12266 -18.05480 -17.42202 -17.02334 -16.85128 -16.29345 -15.94966 -15.75892 -15.51793 -14.93259 -14.48425 -14.38564 -14.00618 -13.90762 -13.73270 -13.52885 -13.32965 -13.20051 -13.01863 -12.62516 -12.59001 -12.38770 -12.11757 -12.04504 -11.77693 -11.74113 -11.57884 -11.24148 -11.19903 -10.92393 -10.74096 -10.60030 -10.41538 -10.21082 -9.96682 -9.83457 -9.66490 -9.52655 -8.95399 -8.92150 -8.62773 -6.99455 -5.80194 -3.08519 0.71610 0.81580 2.58389 2.92904 3.20078 3.40468 3.46800 3.48525 3.87842 4.21562 4.29506 4.48007 4.53144 4.64241 4.72502 4.76233 4.78805 4.86948 4.97495 5.01739 5.11393 5.25677 5.30012 5.43209 5.50022 5.51307 5.58490 5.60450 5.67279 5.71816 5.81231 5.84473 5.86729 5.88659 5.96089 6.04734 6.16288 6.19210 6.22069 6.35929 6.43224 6.48656 6.56148 6.61748 6.84708 7.07326 7.52074 7.67914 8.11567 8.38409 9.49995 10.06984 10.41939 11.42481 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.001807 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.262899 B =15490.494831 C =16205.056002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.116 4.116 16 C 0.097 3.903 17 N -0.617 5.617 18 C 0.525 3.475 19 O -0.547 6.547 20 C -0.131 4.131 21 C -0.065 4.065 22 C -0.090 4.090 23 C -0.087 4.087 24 C -0.151 4.151 25 C 0.091 3.909 26 F -0.142 7.142 27 C -0.151 4.151 28 C -0.087 4.087 29 C 0.113 3.887 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.076 0.924 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.360 0.622 -25.648 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.026 4.026 17 N -0.350 5.350 18 C 0.314 3.686 19 O -0.426 6.426 20 C -0.171 4.171 21 C -0.103 4.103 22 C -0.090 4.090 23 C -0.105 4.105 24 C -0.170 4.170 25 C 0.071 3.929 26 F -0.121 7.121 27 C -0.170 4.170 28 C -0.105 4.105 29 C -0.009 4.009 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.094 0.906 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.843 0.928 -25.863 26.329 hybrid contribution 0.506 -0.034 0.895 1.029 sum 5.348 0.894 -24.968 25.550 Atomic orbital electron populations 1.22492 0.99244 1.00967 1.00085 1.20132 0.91800 0.95144 0.85452 0.93303 1.42371 1.78149 1.10648 1.05139 1.19264 1.36221 0.93871 0.87287 0.91171 1.24723 1.02294 0.95976 0.98010 1.69666 1.51064 1.08636 1.28771 0.86150 0.77269 0.78816 0.84152 1.20596 1.21944 1.21938 1.22664 0.95146 1.00290 0.94121 0.90134 1.22586 0.96443 1.04135 0.92259 1.22194 0.86531 0.99755 0.94090 1.48622 1.15660 1.65658 1.05097 1.20281 0.89213 0.77817 0.81259 1.90701 1.27713 1.48730 1.75411 1.21633 0.97758 1.03833 0.93829 1.20349 0.95396 1.03647 0.90879 1.20012 0.97170 0.93452 0.98390 1.20978 0.93411 1.00002 0.96094 1.21164 1.00585 0.94556 1.00721 1.17756 0.87966 0.93646 0.93482 1.91503 1.58953 1.91979 1.69644 1.21169 0.95822 0.99826 1.00178 1.20981 0.97296 0.95802 0.96377 1.22307 0.92373 0.99365 0.86889 0.93456 0.92727 0.94373 0.78305 0.93609 0.90243 0.89435 0.91538 0.91589 0.88791 0.88756 0.89844 0.89860 0.84857 0.84742 0.84722 0.84829 0.90558 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.31 37.16 0.35 -2.57 16 2 C 0.19 3.39 2.40 -67.93 -0.16 3.22 16 3 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 4 N -0.72 -16.83 4.90 -53.43 -0.26 -17.09 16 5 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 6 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 9 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C -0.10 -1.53 2.63 -88.47 -0.23 -1.76 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.58 6.21 -24.87 -0.15 -1.74 16 16 C 0.10 1.04 6.49 -3.04 -0.02 1.02 16 17 N -0.62 -7.69 3.33 -170.49 -0.57 -8.26 16 18 C 0.53 6.53 7.85 -10.99 -0.09 6.45 16 19 O -0.55 -8.70 16.24 5.56 0.09 -8.61 16 20 C -0.13 -1.09 4.87 -27.88 -0.14 -1.23 16 21 C -0.07 -0.52 4.63 -27.88 -0.13 -0.65 16 22 C -0.09 -0.66 5.13 -104.62 -0.54 -1.20 16 23 C -0.09 -0.60 9.70 -39.59 -0.38 -0.98 16 24 C -0.15 -1.10 10.03 -39.52 -0.40 -1.50 16 25 C 0.09 0.76 7.30 -39.42 -0.29 0.47 16 26 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 27 C -0.15 -1.11 10.03 -39.51 -0.40 -1.51 16 28 C -0.09 -0.60 9.70 -39.60 -0.38 -0.99 16 29 C 0.11 1.56 5.42 -2.53 -0.01 1.55 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.56 7.33 -51.93 -0.38 0.18 16 33 H 0.38 9.54 7.80 -40.82 -0.32 9.22 16 34 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 42 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 46 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 47 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 48 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -31.19 399.59 -10.02 -41.21 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.82 Total: 5.95 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -3.22 Total: -8.26 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.10 Total: -51.83 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.19 -10.02 -41.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325418311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.349 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds