Wall clock time and date at job start Tue Mar 31 2020 17:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47011 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47353 * 119.99952 * 9 7 5 12 12 H 1.48499 * 109.47342 * 239.99965 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 110.88748 * 299.30213 * 13 2 1 15 15 C 1.55158 * 111.00710 * 175.42198 * 13 2 1 16 16 C 1.54365 * 102.92041 * 206.45596 * 15 13 2 17 17 N 1.47028 * 107.29249 * 22.13366 * 16 15 13 18 18 C 1.34779 * 125.64795 * 181.12907 * 17 16 15 19 19 O 1.21278 * 119.99612 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00001 * 359.95901 * 18 17 16 21 21 C 1.53009 * 109.46866 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.46874 * 180.02562 * 21 20 18 23 23 C 1.38248 * 119.96871 * 269.72476 * 22 21 20 24 24 C 1.38198 * 120.01977 * 179.73140 * 23 22 21 25 25 C 1.38456 * 119.97669 * 0.56753 * 24 23 22 26 26 F 1.35105 * 120.02635 * 179.68525 * 25 24 23 27 27 C 1.38462 * 119.94760 * 359.70290 * 25 24 23 28 28 C 1.38195 * 119.97276 * 0.02562 * 27 25 24 29 29 C 1.47425 * 108.70050 * 1.09407 * 17 16 15 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 35 35 H 1.08997 * 110.71506 * 324.78553 * 15 13 2 36 36 H 1.08993 * 110.72114 * 88.06107 * 15 13 2 37 37 H 1.09001 * 109.84582 * 262.72678 * 16 15 13 38 38 H 1.09000 * 109.90660 * 141.57633 * 16 15 13 39 39 H 1.08996 * 109.47295 * 299.99485 * 20 18 17 40 40 H 1.08996 * 109.47179 * 60.00598 * 20 18 17 41 41 H 1.09004 * 109.47023 * 300.00403 * 21 20 18 42 42 H 1.09000 * 109.46541 * 59.99853 * 21 20 18 43 43 H 1.07993 * 119.99003 * 359.97438 * 23 22 21 44 44 H 1.08007 * 120.01154 * 180.25095 * 24 23 22 45 45 H 1.08001 * 120.01171 * 179.97438 * 27 25 24 46 46 H 1.07997 * 119.98435 * 179.97438 * 28 27 25 47 47 H 1.08995 * 110.36760 * 217.03118 * 29 17 16 48 48 H 1.08999 * 110.45924 * 94.75676 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 2.3753 1.6822 4.9211 11 1 1.9299 -0.3594 6.1523 12 1 4.2071 0.2280 5.5606 13 6 2.0400 -0.7213 -1.2492 14 1 1.6996 -1.7566 -1.2663 15 6 3.5866 -0.6427 -1.3444 16 6 3.8456 -0.7620 -2.8615 17 7 2.6095 -0.3602 -3.5487 18 6 2.4212 -0.3478 -4.8832 19 8 1.3549 0.0036 -5.3419 20 6 3.5357 -0.7701 -5.8054 21 6 3.0640 -0.6648 -7.2571 22 6 4.1783 -1.0878 -8.1793 23 6 5.0773 -0.1497 -8.6517 24 6 6.1029 -0.5373 -9.4930 25 6 6.2229 -1.8636 -9.8720 26 9 7.2214 -2.2425 -10.6995 27 6 5.3186 -2.8012 -9.4027 28 6 4.2971 -2.4122 -8.5570 29 6 1.6098 0.0259 -2.5363 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.2493 -2.3958 4.2417 35 1 3.9482 0.3133 -0.9657 36 1 4.0486 -1.4711 -0.8074 37 1 4.0923 -1.7930 -3.1149 38 1 4.6625 -0.1012 -3.1516 39 1 4.3977 -0.1201 -5.6551 40 1 3.8157 -1.8010 -5.5887 41 1 2.2021 -1.3151 -7.4072 42 1 2.7836 0.3659 -7.4741 43 1 4.9804 0.8856 -8.3601 44 1 6.8076 0.1949 -9.8587 45 1 5.4110 -3.8359 -9.6981 46 1 3.5914 -3.1433 -8.1912 47 1 0.6144 -0.2928 -2.8452 48 1 1.6289 1.1035 -2.3736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325418311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:32 Heat of formation + Delta-G solvation = -75.644036 kcal Electronic energy + Delta-G solvation = -27559.325216 eV Core-core repulsion = 23527.390011 eV Total energy + Delta-G solvation = -4031.935205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.87468 -41.20522 -40.10489 -39.02516 -36.75825 -34.83599 -34.20228 -32.05519 -31.99738 -30.82474 -30.32102 -28.70633 -26.42685 -25.56029 -23.97774 -23.94734 -22.76314 -22.01733 -21.06005 -20.05162 -19.13330 -18.62785 -18.15028 -17.57201 -17.33448 -16.64525 -16.58797 -16.45706 -16.19444 -15.67307 -15.47996 -15.05920 -14.89622 -14.61821 -14.58257 -14.38942 -14.10955 -14.00744 -13.87399 -13.71379 -13.47855 -13.33757 -13.15191 -12.88693 -12.79051 -12.63782 -12.40819 -12.30155 -12.14803 -12.11119 -11.94822 -11.76611 -11.62677 -11.53545 -11.35396 -10.94688 -10.87348 -10.03600 -9.63159 -9.50377 -8.96160 -7.90283 -5.16901 0.15375 0.30793 1.48922 1.50128 1.58962 1.64820 2.00973 2.58801 2.63735 3.32340 3.38854 3.44518 3.68582 3.71795 3.79114 3.87617 3.99393 4.02389 4.14963 4.20203 4.31306 4.34999 4.39029 4.41144 4.47476 4.54717 4.62870 4.65039 4.74065 4.81974 4.89123 4.93301 5.01239 5.04994 5.05788 5.08517 5.18337 5.20274 5.24000 5.25847 5.31421 5.37347 5.40606 5.56701 5.62202 5.62401 5.95926 6.32342 6.57062 7.15971 7.39296 8.15469 8.38988 9.33167 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.001807 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.262899 B =15490.494831 C =16205.056002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.046 0.954 4 N -0.730 5.730 5 C -0.229 4.229 6 H 0.073 0.927 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.298 1.298 12 H -0.295 1.295 13 C -0.094 4.094 14 H 0.075 0.925 15 C -0.115 4.115 16 C 0.105 3.895 17 N -0.619 5.619 18 C 0.522 3.478 19 O -0.587 6.587 20 C -0.122 4.122 21 C -0.058 4.058 22 C -0.091 4.091 23 C -0.088 4.088 24 C -0.155 4.155 25 C 0.070 3.930 26 F -0.153 7.153 27 C -0.156 4.156 28 C -0.089 4.089 29 C 0.119 3.881 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.068 0.932 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 1.323 -26.834 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.064 0.936 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.091 0.909 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.193 1.193 11 H -0.226 1.226 12 H -0.222 1.222 13 C -0.114 4.114 14 H 0.093 0.907 15 C -0.153 4.153 16 C -0.017 4.017 17 N -0.352 5.352 18 C 0.313 3.687 19 O -0.468 6.468 20 C -0.161 4.161 21 C -0.096 4.096 22 C -0.092 4.092 23 C -0.106 4.106 24 C -0.174 4.174 25 C 0.051 3.949 26 F -0.132 7.132 27 C -0.175 4.175 28 C -0.107 4.107 29 C -0.004 4.004 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.168 0.832 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.166 0.834 47 H 0.087 0.913 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.512 1.661 -27.079 27.684 hybrid contribution 0.238 -0.214 1.200 1.242 sum 5.751 1.447 -25.879 26.549 Atomic orbital electron populations 1.22366 0.98285 1.00764 1.00555 1.20309 0.92300 0.94916 0.85182 0.93552 1.42515 1.78281 1.10271 1.05926 1.19594 1.34181 0.94044 0.88313 0.90884 1.25433 1.03417 0.96836 1.01056 1.69804 1.52925 1.10015 1.29141 0.85191 0.76669 0.78216 0.80414 1.19266 1.22602 1.22204 1.22443 0.96299 0.99546 0.93100 0.90708 1.22510 0.95043 1.03109 0.94614 1.22228 0.86326 1.01686 0.91473 1.48693 1.15764 1.65553 1.05164 1.20998 0.89613 0.76806 0.81252 1.90687 1.29611 1.50526 1.75969 1.21660 0.96579 1.05142 0.92708 1.20245 0.95339 1.03109 0.90927 1.19992 0.96995 0.93734 0.98443 1.21180 0.92950 1.00794 0.95680 1.21359 1.00962 0.94465 1.00620 1.18052 0.88304 0.94502 0.94089 1.91473 1.59475 1.92131 1.70086 1.21353 0.95647 1.00382 1.00078 1.21172 0.97334 0.96100 0.96097 1.22111 0.92557 0.99113 0.86616 0.93990 0.94521 0.91565 0.79467 0.94240 0.91191 0.90634 0.89490 0.89043 0.86745 0.86965 0.90664 0.90499 0.83227 0.83495 0.83587 0.83388 0.91316 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 9.31 71.98 0.67 -4.78 16 2 C 0.18 6.57 2.40 44.99 0.11 6.67 16 3 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16 4 N -0.73 -34.21 4.90 -322.94 -1.58 -35.79 16 5 C -0.23 -12.13 9.93 84.03 0.83 -11.29 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 7 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 8 N -0.97 -57.28 13.06 21.65 0.28 -57.00 16 9 Si 0.96 45.13 29.55 68.60 2.03 47.16 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 C -0.09 -2.73 2.63 -9.40 -0.02 -2.75 16 14 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 15 C -0.11 -2.97 6.21 31.80 0.20 -2.77 16 16 C 0.10 1.94 6.49 86.74 0.56 2.50 16 17 N -0.62 -13.97 3.33 -811.70 -2.70 -16.67 16 18 C 0.52 11.82 7.85 87.66 0.69 12.51 16 19 O -0.59 -17.96 16.24 -3.02 -0.05 -18.01 16 20 C -0.12 -1.65 4.87 29.85 0.15 -1.50 16 21 C -0.06 -0.81 4.63 29.85 0.14 -0.67 16 22 C -0.09 -1.13 5.13 -19.86 -0.10 -1.23 16 23 C -0.09 -1.01 9.70 22.26 0.22 -0.79 16 24 C -0.16 -2.00 10.03 22.31 0.22 -1.77 16 25 C 0.07 1.08 7.30 22.37 0.16 1.24 16 26 F -0.15 -2.76 17.27 44.97 0.78 -1.99 16 27 C -0.16 -2.05 10.03 22.31 0.22 -1.82 16 28 C -0.09 -1.05 9.70 22.26 0.22 -0.84 16 29 C 0.12 3.12 5.42 86.86 0.47 3.59 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.87 7.33 -2.39 -0.02 1.85 16 33 H 0.37 18.87 7.80 -92.71 -0.72 18.15 16 34 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.07 1.94 8.03 -2.39 -0.02 1.92 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.17 8.04 -2.38 -0.02 1.15 16 42 H 0.08 1.17 8.04 -2.39 -0.02 1.15 16 43 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 44 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 46 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.07 1.91 7.94 -2.39 -0.02 1.89 16 48 H 0.07 1.80 8.03 -2.39 -0.02 1.78 16 Total: -1.00 -67.37 399.59 4.18 -63.20 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.22 Total: 26.53 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 5.20 Total: -7.43 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -4.00 Total: -109.46 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.05 Total: -18.01 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.37 4.18 -63.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325418311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.447 kcal (2) G-P(sol) polarization free energy of solvation -67.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds