Wall clock time and date at job start Tue Mar 31 2020 19:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48506 * 109.47089 * 270.00192 * 3 2 1 5 5 H 1.48500 * 109.47109 * 30.00034 * 3 2 1 6 6 H 1.48505 * 109.47313 * 149.99770 * 3 2 1 7 7 C 1.37876 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00330 * 175.14295 * 7 2 1 9 9 C 1.50703 * 120.00032 * 355.42383 * 7 2 1 10 10 C 1.53005 * 115.54676 * 274.92215 * 9 7 2 11 11 N 1.46497 * 109.47129 * 294.81585 * 10 9 7 12 12 C 1.34769 * 120.00011 * 184.78311 * 11 10 9 13 13 O 1.21351 * 120.00387 * 5.03078 * 12 11 10 14 14 C 1.49453 * 120.00243 * 185.03773 * 12 11 10 15 15 O 1.21358 * 119.99726 * 5.08572 * 14 12 11 16 16 N 1.34769 * 120.00473 * 185.08548 * 14 12 11 17 17 C 1.46501 * 120.00011 * 179.97438 * 16 14 12 18 18 C 1.53003 * 109.46871 * 180.02562 * 17 16 14 19 19 C 1.52943 * 109.41175 * 295.36173 * 18 17 16 20 20 C 1.53182 * 109.45327 * 176.91428 * 19 18 17 21 21 C 1.53147 * 108.88457 * 56.56114 * 20 19 18 22 22 C 1.52849 * 117.67204 * 91.49792 * 21 20 19 23 23 C 1.52808 * 117.74897 * 160.37328 * 21 20 19 24 24 C 1.53154 * 115.01091 * 306.07091 * 21 20 19 25 25 C 1.52938 * 109.41153 * 175.00574 * 18 17 16 26 26 C 1.52992 * 117.50333 * 129.24725 * 9 7 2 27 27 C 1.52998 * 117.49920 * 60.58499 * 9 7 2 28 28 H 0.97005 * 120.00163 * 4.99931 * 1 2 3 29 29 H 1.09004 * 109.47254 * 54.81876 * 10 9 7 30 30 H 1.09002 * 109.46969 * 174.81524 * 10 9 7 31 31 H 0.97000 * 119.99901 * 4.77722 * 11 10 9 32 32 H 0.97004 * 119.99839 * 0.02562 * 16 14 12 33 33 H 1.08999 * 109.47587 * 300.00142 * 17 16 14 34 34 H 1.08999 * 109.47048 * 60.00844 * 17 16 14 35 35 H 1.08992 * 109.41687 * 55.14909 * 18 17 16 36 36 H 1.08996 * 109.47810 * 296.91029 * 19 18 17 37 37 H 1.09003 * 109.47338 * 56.92364 * 19 18 17 38 38 H 1.09007 * 109.56780 * 296.74443 * 20 19 18 39 39 H 1.08994 * 109.57435 * 176.38773 * 20 19 18 40 40 H 1.09001 * 117.50577 * 215.22099 * 22 21 20 41 41 H 1.09000 * 117.50899 * 0.27635 * 22 21 20 42 42 H 1.08994 * 117.50223 * 359.86527 * 23 21 20 43 43 H 1.09002 * 117.50040 * 144.89544 * 23 21 20 44 44 H 1.09001 * 109.56047 * 294.11088 * 24 21 20 45 45 H 1.08998 * 109.56623 * 173.75527 * 24 21 20 46 46 H 1.09005 * 109.47068 * 303.08047 * 25 18 17 47 47 H 1.08999 * 109.48118 * 63.09440 * 25 18 17 48 48 H 1.09001 * 117.49686 * 0.02562 * 26 9 7 49 49 H 1.09004 * 117.49963 * 145.01627 * 26 9 7 50 50 H 1.09001 * 117.50544 * 214.98024 * 27 9 7 51 51 H 1.09001 * 117.50141 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0787 9 6 1.2546 -2.4971 0.1052 10 6 0.9189 -2.9528 1.5267 11 7 2.1581 -3.2464 2.2509 12 6 2.1056 -3.7587 3.4963 13 8 1.0362 -4.0622 3.9830 14 6 3.3644 -3.9531 4.2781 15 8 4.4232 -3.5651 3.8296 16 7 3.3237 -4.5592 5.4811 17 6 4.5578 -4.7502 6.2472 18 6 4.2356 -5.4578 7.5649 19 6 3.3515 -4.5533 8.4247 20 6 2.9650 -5.2907 9.7105 21 6 4.2420 -5.7255 10.4355 22 6 4.8293 -4.7698 11.4738 23 6 4.1372 -6.0585 11.9232 24 6 5.2205 -6.5445 9.5886 25 6 5.5367 -5.7680 8.3066 26 6 1.5728 -3.5803 -0.9273 27 6 0.2451 -2.8218 -0.9976 28 1 -0.4850 0.8369 -0.0732 29 1 0.3751 -2.1616 2.0430 30 1 0.3015 -3.8501 1.4843 31 1 3.0164 -3.0721 1.8339 32 1 2.4774 -4.8697 5.8394 33 1 5.2538 -5.3583 5.6694 34 1 5.0095 -3.7805 6.4561 35 1 3.7067 -6.3878 7.3569 36 1 3.8980 -3.6446 8.6772 37 1 2.4499 -4.2930 7.8701 38 1 2.3689 -6.1690 9.4626 39 1 2.3885 -4.6258 10.3536 40 1 5.9150 -4.7251 11.5596 41 1 4.3047 -3.8300 11.6466 42 1 3.1574 -5.9667 12.3918 43 1 4.7677 -6.8616 12.3048 44 1 4.7684 -7.5028 9.3329 45 1 6.1394 -6.7107 10.1508 46 1 6.1845 -6.3689 7.6683 47 1 6.0409 -4.8358 8.5615 48 1 2.3249 -3.3507 -1.6821 49 1 1.5427 -4.6177 -0.5940 50 1 -0.6580 -3.3605 -0.7107 51 1 0.1230 -2.0928 -1.7987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331417443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:07 Heat of formation + Delta-G solvation = -49.193404 kcal Electronic energy + Delta-G solvation = -28486.772182 eV Core-core repulsion = 24579.444267 eV Total energy + Delta-G solvation = -3907.327915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.40726 -39.74098 -38.20863 -36.71276 -36.44301 -34.06362 -33.14928 -31.96952 -31.29920 -29.35981 -27.08871 -25.57850 -24.87545 -23.39665 -22.86444 -22.45030 -21.15667 -20.92664 -19.89563 -19.51359 -18.97580 -18.02723 -16.55082 -16.15834 -15.84474 -15.70426 -15.49319 -15.31116 -14.79524 -14.71234 -14.47052 -14.06693 -13.98686 -13.69117 -13.60125 -13.23644 -13.12380 -12.70160 -12.61659 -12.52789 -12.06199 -11.87650 -11.83287 -11.62528 -11.45200 -11.39631 -11.27364 -10.99607 -10.97290 -10.94606 -10.52653 -10.47065 -10.28457 -10.24935 -9.91710 -9.61510 -9.21659 -9.19554 -9.08845 -8.53212 -8.38560 -8.18038 -6.08694 -4.18240 1.80488 2.70831 3.26802 3.34672 3.38760 3.39015 3.61531 4.04956 4.19329 4.29482 4.36115 4.37999 4.52195 4.63704 4.69110 4.83681 4.94208 4.98022 5.14139 5.15522 5.18925 5.29322 5.31834 5.34477 5.41753 5.47647 5.53767 5.57272 5.62998 5.72065 5.75243 5.77119 5.81774 5.90130 5.96077 6.05574 6.10347 6.28108 6.29029 6.40072 6.47797 6.66880 6.75198 7.00091 7.08453 7.24135 7.33277 7.50102 7.81243 7.87332 8.16418 8.31663 8.53051 8.83921 9.49379 10.98329 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.002088 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.948997 B =13407.155902 C =13861.710113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.020 3.980 10 C 0.159 3.841 11 N -0.666 5.666 12 C 0.495 3.505 13 O -0.542 6.542 14 C 0.507 3.493 15 O -0.519 6.519 16 N -0.706 5.706 17 C 0.122 3.878 18 C -0.098 4.098 19 C -0.115 4.115 20 C -0.081 4.081 21 C -0.122 4.122 22 C -0.175 4.175 23 C -0.179 4.179 24 C -0.079 4.079 25 C -0.108 4.108 26 C -0.210 4.210 27 C -0.139 4.139 28 H 0.262 0.738 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.414 0.586 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.291 -12.908 20.103 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.019 3.981 10 C 0.037 3.963 11 N -0.316 5.316 12 C 0.274 3.726 13 O -0.421 6.421 14 C 0.288 3.712 15 O -0.394 6.394 16 N -0.361 5.361 17 C -0.002 4.002 18 C -0.116 4.116 19 C -0.153 4.153 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.212 4.212 23 C -0.216 4.216 24 C -0.117 4.117 25 C -0.146 4.146 26 C -0.247 4.247 27 C -0.177 4.177 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.250 0.750 32 H 0.248 0.752 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.128 -12.668 20.160 25.159 hybrid contribution 0.364 0.979 0.007 1.045 sum 8.492 -11.689 20.167 24.809 Atomic orbital electron populations 1.69988 1.05866 1.26919 1.48411 1.24991 0.94850 0.99036 0.94246 0.86615 0.80083 0.83376 0.78152 1.20647 1.21174 1.19628 1.20378 0.92785 0.88463 1.52091 0.92002 1.19044 0.99760 0.93605 0.85683 1.21210 0.83420 0.98381 0.93309 1.45891 1.12667 1.59335 1.13679 1.19949 0.88774 0.80352 0.83501 1.90707 1.30325 1.51222 1.69867 1.20488 0.89879 0.78574 0.82271 1.90760 1.31284 1.48118 1.69246 1.45768 1.11799 1.59673 1.18848 1.21498 0.86380 1.01101 0.91198 1.21373 0.97365 0.99266 0.93638 1.21618 0.99726 0.98452 0.95488 1.21142 0.94624 0.99985 0.96092 1.21520 0.98344 1.02247 0.90059 1.23018 1.00138 0.94323 1.03681 1.22989 1.02274 0.99338 0.96954 1.21121 0.97526 0.97761 0.95265 1.21471 0.96293 1.00851 0.95985 1.23031 1.00733 0.95525 1.05409 1.22472 0.90758 1.01259 1.03241 0.92864 0.90806 0.93404 0.75004 0.75250 0.91044 0.91026 0.90261 0.91457 0.91383 0.91364 0.91723 0.88982 0.88933 0.88942 0.88994 0.91401 0.91745 0.91413 0.91397 0.90214 0.91647 0.91734 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.12 12.65 55.43 0.70 -23.41 16 2 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.50 -12.98 8.59 -34.44 -0.30 -13.27 16 8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 9 C 0.02 0.47 1.47 -155.66 -0.23 0.24 16 10 C 0.16 3.55 5.53 -4.04 -0.02 3.52 16 11 N -0.67 -13.41 5.46 -60.73 -0.33 -13.74 16 12 C 0.49 9.30 7.88 -11.59 -0.09 9.21 16 13 O -0.54 -10.94 16.47 5.50 0.09 -10.85 16 14 C 0.51 8.32 7.89 -11.59 -0.09 8.23 16 15 O -0.52 -9.64 16.50 5.49 0.09 -9.55 16 16 N -0.71 -8.76 5.24 -60.73 -0.32 -9.07 16 17 C 0.12 1.21 5.06 -4.04 -0.02 1.19 16 18 C -0.10 -0.73 2.14 -90.68 -0.19 -0.92 16 19 C -0.12 -0.89 5.11 -26.67 -0.14 -1.03 16 20 C -0.08 -0.57 5.67 -26.56 -0.15 -0.72 16 21 C -0.12 -0.80 1.97 -154.53 -0.31 -1.11 16 22 C -0.17 -1.13 9.93 -26.79 -0.27 -1.40 16 23 C -0.18 -1.11 9.99 -26.82 -0.27 -1.37 16 24 C -0.08 -0.49 5.67 -26.56 -0.15 -0.64 16 25 C -0.11 -0.70 5.21 -26.67 -0.14 -0.84 16 26 C -0.21 -4.38 9.96 -26.70 -0.27 -4.64 16 27 C -0.14 -3.15 9.14 -26.70 -0.24 -3.40 16 28 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 29 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 30 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 31 H 0.41 8.27 7.84 -40.82 -0.32 7.95 16 32 H 0.41 4.64 7.11 -40.82 -0.29 4.35 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.57 7.08 -51.93 -0.37 0.20 16 38 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.37 8.09 -51.93 -0.42 -0.06 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 49 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 50 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 51 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 414.64 15.07 6.25 6.25 Total: -1.00 -29.05 414.64 -10.48 -39.52 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -8.97 Total: 10.14 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.97 Total: -5.11 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.05 Total: -46.23 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.18 Total: -20.40 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.05 -10.48 -39.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331417443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.671 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds