Wall clock time and date at job start Tue Mar 31 2020 19:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48506 * 109.47089 * 270.00192 * 3 2 1 5 5 H 1.48500 * 109.47109 * 30.00034 * 3 2 1 6 6 H 1.48505 * 109.47313 * 149.99770 * 3 2 1 7 7 C 1.37876 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00330 * 175.14295 * 7 2 1 9 9 C 1.50703 * 120.00032 * 355.42383 * 7 2 1 10 10 C 1.53005 * 115.54676 * 274.92215 * 9 7 2 11 11 N 1.46497 * 109.47129 * 294.81585 * 10 9 7 12 12 C 1.34769 * 120.00011 * 184.78311 * 11 10 9 13 13 O 1.21351 * 120.00387 * 5.03078 * 12 11 10 14 14 C 1.49453 * 120.00243 * 185.03773 * 12 11 10 15 15 O 1.21358 * 119.99726 * 5.08572 * 14 12 11 16 16 N 1.34769 * 120.00473 * 185.08548 * 14 12 11 17 17 C 1.46501 * 120.00011 * 179.97438 * 16 14 12 18 18 C 1.53003 * 109.46871 * 180.02562 * 17 16 14 19 19 C 1.52943 * 109.41175 * 295.36173 * 18 17 16 20 20 C 1.53182 * 109.45327 * 176.91428 * 19 18 17 21 21 C 1.53147 * 108.88457 * 56.56114 * 20 19 18 22 22 C 1.52849 * 117.67204 * 91.49792 * 21 20 19 23 23 C 1.52808 * 117.74897 * 160.37328 * 21 20 19 24 24 C 1.53154 * 115.01091 * 306.07091 * 21 20 19 25 25 C 1.52938 * 109.41153 * 175.00574 * 18 17 16 26 26 C 1.52992 * 117.50333 * 129.24725 * 9 7 2 27 27 C 1.52998 * 117.49920 * 60.58499 * 9 7 2 28 28 H 0.97005 * 120.00163 * 4.99931 * 1 2 3 29 29 H 1.09004 * 109.47254 * 54.81876 * 10 9 7 30 30 H 1.09002 * 109.46969 * 174.81524 * 10 9 7 31 31 H 0.97000 * 119.99901 * 4.77722 * 11 10 9 32 32 H 0.97004 * 119.99839 * 0.02562 * 16 14 12 33 33 H 1.08999 * 109.47587 * 300.00142 * 17 16 14 34 34 H 1.08999 * 109.47048 * 60.00844 * 17 16 14 35 35 H 1.08992 * 109.41687 * 55.14909 * 18 17 16 36 36 H 1.08996 * 109.47810 * 296.91029 * 19 18 17 37 37 H 1.09003 * 109.47338 * 56.92364 * 19 18 17 38 38 H 1.09007 * 109.56780 * 296.74443 * 20 19 18 39 39 H 1.08994 * 109.57435 * 176.38773 * 20 19 18 40 40 H 1.09001 * 117.50577 * 215.22099 * 22 21 20 41 41 H 1.09000 * 117.50899 * 0.27635 * 22 21 20 42 42 H 1.08994 * 117.50223 * 359.86527 * 23 21 20 43 43 H 1.09002 * 117.50040 * 144.89544 * 23 21 20 44 44 H 1.09001 * 109.56047 * 294.11088 * 24 21 20 45 45 H 1.08998 * 109.56623 * 173.75527 * 24 21 20 46 46 H 1.09005 * 109.47068 * 303.08047 * 25 18 17 47 47 H 1.08999 * 109.48118 * 63.09440 * 25 18 17 48 48 H 1.09001 * 117.49686 * 0.02562 * 26 9 7 49 49 H 1.09004 * 117.49963 * 145.01627 * 26 9 7 50 50 H 1.09001 * 117.50544 * 214.98024 * 27 9 7 51 51 H 1.09001 * 117.50141 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0787 9 6 1.2546 -2.4971 0.1052 10 6 0.9189 -2.9528 1.5267 11 7 2.1581 -3.2464 2.2509 12 6 2.1056 -3.7587 3.4963 13 8 1.0362 -4.0622 3.9830 14 6 3.3644 -3.9531 4.2781 15 8 4.4232 -3.5651 3.8296 16 7 3.3237 -4.5592 5.4811 17 6 4.5578 -4.7502 6.2472 18 6 4.2356 -5.4578 7.5649 19 6 3.3515 -4.5533 8.4247 20 6 2.9650 -5.2907 9.7105 21 6 4.2420 -5.7255 10.4355 22 6 4.8293 -4.7698 11.4738 23 6 4.1372 -6.0585 11.9232 24 6 5.2205 -6.5445 9.5886 25 6 5.5367 -5.7680 8.3066 26 6 1.5728 -3.5803 -0.9273 27 6 0.2451 -2.8218 -0.9976 28 1 -0.4850 0.8369 -0.0732 29 1 0.3751 -2.1616 2.0430 30 1 0.3015 -3.8501 1.4843 31 1 3.0164 -3.0721 1.8339 32 1 2.4774 -4.8697 5.8394 33 1 5.2538 -5.3583 5.6694 34 1 5.0095 -3.7805 6.4561 35 1 3.7067 -6.3878 7.3569 36 1 3.8980 -3.6446 8.6772 37 1 2.4499 -4.2930 7.8701 38 1 2.3689 -6.1690 9.4626 39 1 2.3885 -4.6258 10.3536 40 1 5.9150 -4.7251 11.5596 41 1 4.3047 -3.8300 11.6466 42 1 3.1574 -5.9667 12.3918 43 1 4.7677 -6.8616 12.3048 44 1 4.7684 -7.5028 9.3329 45 1 6.1394 -6.7107 10.1508 46 1 6.1845 -6.3689 7.6683 47 1 6.0409 -4.8358 8.5615 48 1 2.3249 -3.3507 -1.6821 49 1 1.5427 -4.6177 -0.5940 50 1 -0.6580 -3.3605 -0.7107 51 1 0.1230 -2.0928 -1.7987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331417443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:06 Heat of formation + Delta-G solvation = -65.218490 kcal Electronic energy + Delta-G solvation = -28487.467082 eV Core-core repulsion = 24579.444267 eV Total energy + Delta-G solvation = -3908.022815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.68688 -40.47868 -39.60853 -38.46151 -37.27921 -35.31322 -34.46574 -33.96082 -31.84746 -30.17547 -28.68288 -27.43075 -25.96612 -24.18702 -23.61421 -23.20414 -22.88772 -21.65135 -21.42035 -21.06570 -19.65303 -19.40017 -18.08995 -17.80464 -17.07783 -16.66577 -16.53803 -16.34341 -16.20457 -16.04138 -15.83160 -15.28790 -15.06597 -14.74233 -14.57138 -14.41919 -14.22311 -13.93527 -13.68514 -13.49781 -13.25229 -13.15517 -12.96182 -12.83524 -12.78148 -12.62778 -12.38837 -12.33104 -12.08204 -12.01537 -11.92274 -11.58161 -11.42219 -11.04181 -10.98309 -10.81586 -10.71987 -10.45897 -10.41888 -10.28881 -10.11555 -9.96143 -8.11113 -6.24537 0.38593 1.39758 1.40166 1.43828 1.51986 2.17904 2.41187 2.73140 2.89406 3.16397 3.43619 3.60553 3.65565 3.68662 3.79119 3.99091 4.07453 4.13758 4.19761 4.26287 4.44138 4.51419 4.52675 4.59659 4.62452 4.64848 4.68644 4.72554 4.82809 4.90672 4.91847 4.96022 5.02192 5.05617 5.08847 5.13438 5.15612 5.20005 5.26737 5.28415 5.31495 5.34494 5.35654 5.52555 5.53028 5.54855 5.68332 5.76894 6.01037 6.35423 6.46517 6.78270 6.82988 7.00645 7.44984 8.95452 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.002088 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.948997 B =13407.155902 C =13861.710113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.027 3.973 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.506 4.506 8 H 0.058 0.942 9 C -0.005 4.005 10 C 0.175 3.825 11 N -0.670 5.670 12 C 0.495 3.505 13 O -0.556 6.556 14 C 0.512 3.488 15 O -0.543 6.543 16 N -0.686 5.686 17 C 0.120 3.880 18 C -0.087 4.087 19 C -0.114 4.114 20 C -0.079 4.079 21 C -0.127 4.127 22 C -0.179 4.179 23 C -0.176 4.176 24 C -0.077 4.077 25 C -0.105 4.105 26 C -0.180 4.180 27 C -0.145 4.145 28 H 0.260 0.740 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.415 0.585 32 H 0.418 0.582 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.075 0.925 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.506 -14.264 21.169 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.174 4.174 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.544 4.544 8 H 0.076 0.924 9 C -0.006 4.006 10 C 0.051 3.949 11 N -0.319 5.319 12 C 0.276 3.724 13 O -0.436 6.436 14 C 0.292 3.708 15 O -0.420 6.420 16 N -0.339 5.339 17 C -0.002 4.002 18 C -0.106 4.106 19 C -0.152 4.152 20 C -0.117 4.117 21 C -0.127 4.127 22 C -0.216 4.216 23 C -0.213 4.213 24 C -0.114 4.114 25 C -0.143 4.143 26 C -0.217 4.217 27 C -0.183 4.183 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.251 0.749 32 H 0.256 0.744 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.108 0.892 50 H 0.094 0.906 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.351 -14.049 21.260 27.144 hybrid contribution -0.018 1.359 -0.259 1.383 sum 9.333 -12.690 21.000 26.252 Atomic orbital electron populations 1.70085 1.06927 1.27347 1.49704 1.25639 0.95543 1.01811 0.94393 0.85752 0.78847 0.80087 0.78185 1.20069 1.21389 1.19508 1.20640 0.92787 0.89758 1.51211 0.92430 1.19097 1.00779 0.94045 0.86691 1.20827 0.84088 0.97458 0.92478 1.45805 1.11899 1.59924 1.14313 1.20381 0.89615 0.79348 0.83064 1.90694 1.31252 1.51641 1.70035 1.19998 0.88369 0.79260 0.83135 1.90756 1.31489 1.49718 1.70071 1.45769 1.13211 1.57550 1.17377 1.21710 0.85187 1.01297 0.92042 1.21318 0.98053 0.99063 0.92181 1.21595 0.99298 0.98418 0.95897 1.21115 0.94966 0.99941 0.95653 1.21558 0.98270 1.02516 0.90366 1.23051 1.00398 0.94343 1.03846 1.23040 1.02426 0.99301 0.96548 1.21114 0.97725 0.97659 0.94900 1.21454 0.95639 1.00988 0.96227 1.23018 0.99164 0.95985 1.03573 1.22392 0.92051 1.01519 1.02354 0.93073 0.94178 0.92595 0.74894 0.74416 0.90556 0.91525 0.89438 0.92106 0.92225 0.91055 0.91927 0.88585 0.89322 0.88867 0.88267 0.90991 0.91027 0.90549 0.91700 0.89914 0.89160 0.90612 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.50 12.65 21.45 0.27 -50.23 16 2 C 0.03 1.45 5.43 84.65 0.46 1.91 16 3 Si 0.95 43.03 29.54 68.60 2.03 45.05 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.51 -26.36 8.59 25.60 0.22 -26.14 16 8 H 0.06 2.98 7.82 -2.91 -0.02 2.95 16 9 C -0.01 -0.25 1.47 -52.93 -0.08 -0.33 16 10 C 0.17 7.80 5.53 86.38 0.48 8.28 16 11 N -0.67 -26.78 5.46 -464.41 -2.54 -29.31 16 12 C 0.50 18.35 7.88 87.27 0.69 19.04 16 13 O -0.56 -22.13 16.47 -3.25 -0.05 -22.19 16 14 C 0.51 16.33 7.89 87.27 0.69 17.02 16 15 O -0.54 -19.71 16.50 -3.27 -0.05 -19.76 16 16 N -0.69 -16.05 5.24 -464.41 -2.43 -18.48 16 17 C 0.12 2.19 5.06 86.38 0.44 2.63 16 18 C -0.09 -1.13 2.14 -10.83 -0.02 -1.16 16 19 C -0.11 -1.62 5.11 30.64 0.16 -1.46 16 20 C -0.08 -1.00 5.67 30.70 0.17 -0.82 16 21 C -0.13 -1.46 1.97 -52.19 -0.10 -1.57 16 22 C -0.18 -2.08 9.93 30.55 0.30 -1.78 16 23 C -0.18 -1.89 9.99 30.54 0.31 -1.58 16 24 C -0.08 -0.77 5.67 30.70 0.17 -0.59 16 25 C -0.11 -1.14 5.21 30.63 0.16 -0.98 16 26 C -0.18 -7.24 9.96 30.61 0.30 -6.93 16 27 C -0.14 -6.52 9.14 30.62 0.28 -6.24 16 28 H 0.26 14.01 8.32 -92.70 -0.77 13.24 16 29 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 31 H 0.41 16.45 7.84 -92.71 -0.73 15.72 16 32 H 0.42 8.81 7.11 -92.71 -0.66 8.15 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.94 7.08 -2.39 -0.02 0.92 16 38 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.06 0.81 8.09 -2.39 -0.02 0.79 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 46 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 49 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 50 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 51 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -61.28 414.64 1.38 -59.90 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.46 Total: 35.73 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 4.62 Total: -0.71 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -4.70 Total: -98.02 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.11 Total: -41.95 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -61.28 1.38 -59.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331417443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.314 kcal (2) G-P(sol) polarization free energy of solvation -61.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds