Wall clock time and date at job start Tue Mar 31 2020 17:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47300 * 2 1 4 4 C 1.53002 * 109.47347 * 120.00230 * 2 1 3 5 5 N 1.46503 * 109.46905 * 175.00095 * 4 2 1 6 6 C 1.46498 * 119.99786 * 269.99693 * 5 4 2 7 7 C 1.34775 * 120.00029 * 90.00372 * 5 4 2 8 8 O 1.21281 * 120.00073 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.99783 * 179.97438 * 7 5 4 10 10 C 1.53785 * 113.69000 * 80.93572 * 9 7 5 11 11 C 1.53777 * 87.08241 * 89.12299 * 10 9 7 12 12 C 1.50703 * 113.61172 * 139.97748 * 11 10 9 13 13 C 1.38239 * 119.97624 * 322.23151 * 12 11 10 14 14 C 1.38200 * 120.02568 * 179.72347 * 13 12 11 15 15 C 1.38465 * 119.97212 * 0.57212 * 14 13 12 16 16 F 1.35102 * 120.02330 * 179.68014 * 15 14 13 17 17 C 1.38459 * 119.94528 * 359.70199 * 15 14 13 18 18 C 1.38193 * 119.98055 * 0.02562 * 17 15 14 19 19 C 1.53781 * 113.61206 * 178.47107 * 9 7 5 20 20 N 1.46503 * 109.47161 * 240.00259 * 2 1 3 21 21 C 1.36940 * 120.00042 * 84.99712 * 20 2 1 22 22 H 1.08003 * 120.00052 * 0.02562 * 21 20 2 23 23 C 1.38813 * 120.00004 * 180.02562 * 21 20 2 24 24 N 1.31620 * 119.99617 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99830 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47108 * 89.99825 * 25 23 21 27 27 H 1.48503 * 109.46864 * 209.99933 * 25 23 21 28 28 H 1.48498 * 109.47080 * 329.99817 * 25 23 21 29 29 H 1.08997 * 109.46714 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46897 * 299.99774 * 1 2 3 31 31 H 1.08996 * 109.47083 * 59.99611 * 1 2 3 32 32 H 1.08995 * 109.46809 * 55.00094 * 4 2 1 33 33 H 1.08997 * 109.46953 * 295.00144 * 4 2 1 34 34 H 1.09004 * 109.47095 * 270.00540 * 6 5 4 35 35 H 1.08996 * 109.47159 * 30.00090 * 6 5 4 36 36 H 1.09000 * 109.47051 * 150.00513 * 6 5 4 37 37 H 1.09002 * 112.85178 * 309.66413 * 9 7 5 38 38 H 1.08999 * 113.61060 * 203.67722 * 10 9 7 39 39 H 1.08997 * 113.61198 * 334.57515 * 10 9 7 40 40 H 1.08994 * 113.61814 * 270.88533 * 11 10 9 41 41 H 1.08001 * 119.98965 * 359.97438 * 13 12 11 42 42 H 1.07997 * 120.01460 * 180.25614 * 14 13 12 43 43 H 1.08003 * 120.00742 * 179.97438 * 17 15 14 44 44 H 1.07996 * 119.99379 * 180.02562 * 18 17 15 45 45 H 1.09000 * 113.61578 * 25.34539 * 19 9 7 46 46 H 1.09001 * 113.61682 * 156.17118 * 19 9 7 47 47 H 0.96994 * 119.99909 * 264.99766 * 20 2 1 48 48 H 0.96998 * 119.99518 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5002 -0.8264 1.1904 6 6 4.1259 -1.9919 0.5610 7 6 4.2677 0.1492 1.7155 8 8 3.7496 1.1142 2.2363 9 6 5.7696 0.0408 1.6556 10 6 6.3659 0.4616 0.3019 11 6 6.4384 1.8900 0.8668 12 6 7.6963 2.6269 0.4852 13 6 8.9016 1.9524 0.4281 14 6 10.0549 2.6259 0.0727 15 6 10.0047 3.9795 -0.2148 16 9 11.1326 4.6403 -0.5561 17 6 8.7978 4.6552 -0.1518 18 6 7.6449 3.9784 0.1984 19 6 6.4992 1.2501 2.2640 20 7 2.0184 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8926 1.0406 -2.4242 23 6 2.6113 -0.6618 -3.5094 24 7 2.7374 -0.0050 -4.6430 25 14 3.0543 -2.4746 -3.4258 26 1 1.8564 -3.2921 -3.7453 27 1 4.1295 -2.7671 -4.4075 28 1 3.5291 -2.8056 -2.0583 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6055 -1.7198 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 4.2823 -2.7688 1.3095 35 1 3.4758 -2.3721 -0.2268 36 1 5.0852 -1.7020 0.1323 37 1 6.1394 -0.9190 2.0162 38 1 7.3425 0.0219 0.0995 39 1 5.6722 0.3567 -0.5323 40 1 5.5350 2.4746 0.6933 41 1 8.9414 0.8978 0.6575 42 1 10.9957 2.0979 0.0242 43 1 8.7576 5.7110 -0.3755 44 1 6.7034 4.5051 0.2472 45 1 5.9132 1.7818 3.0136 46 1 7.5118 1.0257 2.5992 47 1 2.2491 -1.6317 -1.1527 48 1 3.0601 -0.4624 -5.4351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331646939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:30 Heat of formation + Delta-G solvation = -16.343674 kcal Electronic energy + Delta-G solvation = -29321.163623 eV Core-core repulsion = 25291.799874 eV Total energy + Delta-G solvation = -4029.363749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.98592 -40.81666 -39.22043 -37.42059 -36.17892 -34.34244 -32.10755 -31.28375 -30.91844 -29.57094 -27.21437 -26.55886 -25.67178 -24.92327 -23.46548 -23.17259 -22.08978 -20.51640 -19.95467 -18.29401 -17.89510 -17.65010 -16.98065 -16.41003 -15.99448 -15.83688 -15.68531 -15.19138 -14.81596 -14.58458 -14.49043 -13.94297 -13.66182 -13.50164 -13.35689 -13.07538 -13.01271 -12.73065 -12.59217 -12.50012 -12.35079 -12.29688 -11.87578 -11.76246 -11.58003 -11.42725 -11.28116 -10.96058 -10.92277 -10.69860 -10.59141 -10.44184 -10.29997 -10.08461 -9.61092 -9.44389 -9.22586 -8.98438 -8.57628 -8.29996 -7.27940 -5.78787 -3.13779 1.02077 1.11463 2.83583 3.20313 3.26995 3.31919 3.39173 3.43909 4.14730 4.45037 4.49421 4.53136 4.62461 4.66565 4.75417 4.79439 4.92006 5.14636 5.17615 5.22241 5.30804 5.39087 5.44660 5.50564 5.55016 5.61044 5.64849 5.70262 5.77339 5.89597 5.92999 5.98106 6.00670 6.03205 6.05367 6.11374 6.14669 6.16194 6.20595 6.32329 6.45682 6.56215 6.70268 6.77901 6.78420 7.04848 7.64732 7.98574 8.39445 8.44420 9.17984 9.89846 10.10093 11.39891 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.003445 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.849287 B = 8125.486412 C = 9282.237240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.161 3.839 3 H 0.059 0.941 4 C 0.107 3.893 5 N -0.596 5.596 6 C 0.074 3.926 7 C 0.534 3.466 8 O -0.544 6.544 9 C -0.137 4.137 10 C -0.121 4.121 11 C -0.071 4.071 12 C -0.070 4.070 13 C -0.090 4.090 14 C -0.152 4.152 15 C 0.086 3.914 16 F -0.144 7.144 17 C -0.151 4.151 18 C -0.084 4.084 19 C -0.108 4.108 20 N -0.744 5.744 21 C -0.235 4.235 22 H 0.088 0.912 23 C 0.004 3.996 24 N -0.934 5.934 25 Si 0.879 3.121 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.273 1.273 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.357 0.643 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.270 0.014 14.560 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 H 0.077 0.923 4 C -0.016 4.016 5 N -0.327 5.327 6 C -0.069 4.069 7 C 0.322 3.678 8 O -0.422 6.422 9 C -0.159 4.159 10 C -0.158 4.158 11 C -0.089 4.089 12 C -0.070 4.070 13 C -0.108 4.108 14 C -0.171 4.171 15 C 0.067 3.933 16 F -0.123 7.123 17 C -0.169 4.169 18 C -0.102 4.102 19 C -0.146 4.146 20 N -0.388 5.388 21 C -0.366 4.366 22 H 0.106 0.894 23 C -0.192 4.192 24 N -0.582 5.582 25 Si 0.710 3.290 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.200 1.200 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.191 0.809 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.042 0.713 14.634 18.346 hybrid contribution 0.521 -1.349 -0.480 1.524 sum 11.562 -0.636 14.155 18.288 Atomic orbital electron populations 1.22344 0.98350 1.00837 1.00816 1.20615 0.92090 0.96526 0.85684 0.92264 1.21888 0.78928 1.01111 0.99707 1.47541 1.06624 1.21344 1.57159 1.22051 0.99790 0.87437 0.97657 1.19944 0.88330 0.81986 0.77525 1.90649 1.74885 1.31131 1.45522 1.22363 0.92613 1.00789 1.00099 1.23074 1.01699 0.94917 0.96126 1.21581 0.95582 0.95237 0.96543 1.19876 0.94873 0.93802 0.98494 1.20875 0.91157 1.00146 0.98575 1.21098 1.00052 0.92800 1.03142 1.17725 0.82462 0.90904 1.02208 1.91483 1.49819 1.81006 1.90004 1.21147 0.91527 1.01016 1.03253 1.21015 0.98009 0.93926 0.97260 1.22880 1.00037 0.95092 0.96565 1.42807 1.79782 1.09120 1.07131 1.19065 1.36470 0.95545 0.85474 0.89393 1.24642 1.01753 0.97182 0.95573 1.69696 1.52930 1.35379 1.00238 0.86725 0.78153 0.87249 0.76882 1.21330 1.21868 1.20017 0.93606 0.93980 0.92097 0.91126 0.89792 0.93356 0.89983 0.90877 0.88406 0.88971 0.89367 0.87553 0.84969 0.84950 0.84855 0.84820 0.89752 0.89508 0.80894 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 2 C 0.16 3.04 3.20 -67.93 -0.22 2.82 16 3 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 4 C 0.11 1.67 5.05 -4.04 -0.02 1.65 16 5 N -0.60 -9.13 2.73 -181.57 -0.50 -9.62 16 6 C 0.07 1.01 9.75 59.85 0.58 1.59 16 7 C 0.53 8.36 6.93 -10.99 -0.08 8.28 16 8 O -0.54 -10.05 15.41 5.56 0.09 -9.96 16 9 C -0.14 -1.65 2.99 -90.96 -0.27 -1.92 16 10 C -0.12 -1.49 6.09 -25.92 -0.16 -1.65 16 11 C -0.07 -0.89 3.65 -90.95 -0.33 -1.22 16 12 C -0.07 -0.81 5.29 -104.62 -0.55 -1.37 16 13 C -0.09 -0.92 8.59 -39.60 -0.34 -1.26 16 14 C -0.15 -1.58 10.03 -39.51 -0.40 -1.98 16 15 C 0.09 1.00 7.30 -39.42 -0.29 0.71 16 16 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 17 C -0.15 -1.67 10.03 -39.52 -0.40 -2.07 16 18 C -0.08 -0.96 9.71 -39.59 -0.38 -1.35 16 19 C -0.11 -1.20 6.92 -25.91 -0.18 -1.38 16 20 N -0.74 -16.39 4.37 -53.42 -0.23 -16.62 16 21 C -0.24 -6.36 10.41 -15.06 -0.16 -6.51 16 22 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 24 N -0.93 -28.65 13.97 55.49 0.78 -27.88 16 25 Si 0.88 20.68 27.74 -169.99 -4.71 15.96 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.27 -5.60 4.90 56.52 0.28 -5.32 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.29 3.95 -51.93 -0.20 1.08 16 36 H 0.07 0.95 5.85 -51.93 -0.30 0.65 16 37 H 0.10 0.95 7.92 -51.93 -0.41 0.54 16 38 H 0.09 0.93 6.32 -51.93 -0.33 0.60 16 39 H 0.09 1.38 7.87 -51.93 -0.41 0.97 16 40 H 0.11 1.56 8.09 -51.93 -0.42 1.14 16 41 H 0.13 1.09 6.67 -52.49 -0.35 0.74 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.13 1.40 8.05 -52.49 -0.42 0.98 16 45 H 0.08 1.06 7.41 -51.93 -0.38 0.67 16 46 H 0.09 0.78 7.72 -51.93 -0.40 0.38 16 47 H 0.36 7.52 3.49 -40.82 -0.14 7.38 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -31.95 383.49 -8.92 -40.86 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -7.22 Total: 11.26 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.93 Total: -8.07 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.05 Total: -54.12 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.96 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.95 -8.92 -40.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331646939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.519 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds