Wall clock time and date at job start Tue Mar 31 2020 17:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47300 * 2 1 4 4 C 1.53002 * 109.47347 * 120.00230 * 2 1 3 5 5 N 1.46503 * 109.46905 * 175.00095 * 4 2 1 6 6 C 1.46498 * 119.99786 * 269.99693 * 5 4 2 7 7 C 1.34775 * 120.00029 * 90.00372 * 5 4 2 8 8 O 1.21281 * 120.00073 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.99783 * 179.97438 * 7 5 4 10 10 C 1.53785 * 113.69000 * 80.93572 * 9 7 5 11 11 C 1.53777 * 87.08241 * 89.12299 * 10 9 7 12 12 C 1.50703 * 113.61172 * 139.97748 * 11 10 9 13 13 C 1.38239 * 119.97624 * 322.23151 * 12 11 10 14 14 C 1.38200 * 120.02568 * 179.72347 * 13 12 11 15 15 C 1.38465 * 119.97212 * 0.57212 * 14 13 12 16 16 F 1.35102 * 120.02330 * 179.68014 * 15 14 13 17 17 C 1.38459 * 119.94528 * 359.70199 * 15 14 13 18 18 C 1.38193 * 119.98055 * 0.02562 * 17 15 14 19 19 C 1.53781 * 113.61206 * 178.47107 * 9 7 5 20 20 N 1.46503 * 109.47161 * 240.00259 * 2 1 3 21 21 C 1.36940 * 120.00042 * 84.99712 * 20 2 1 22 22 H 1.08003 * 120.00052 * 0.02562 * 21 20 2 23 23 C 1.38813 * 120.00004 * 180.02562 * 21 20 2 24 24 N 1.31620 * 119.99617 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99830 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47108 * 89.99825 * 25 23 21 27 27 H 1.48503 * 109.46864 * 209.99933 * 25 23 21 28 28 H 1.48498 * 109.47080 * 329.99817 * 25 23 21 29 29 H 1.08997 * 109.46714 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46897 * 299.99774 * 1 2 3 31 31 H 1.08996 * 109.47083 * 59.99611 * 1 2 3 32 32 H 1.08995 * 109.46809 * 55.00094 * 4 2 1 33 33 H 1.08997 * 109.46953 * 295.00144 * 4 2 1 34 34 H 1.09004 * 109.47095 * 270.00540 * 6 5 4 35 35 H 1.08996 * 109.47159 * 30.00090 * 6 5 4 36 36 H 1.09000 * 109.47051 * 150.00513 * 6 5 4 37 37 H 1.09002 * 112.85178 * 309.66413 * 9 7 5 38 38 H 1.08999 * 113.61060 * 203.67722 * 10 9 7 39 39 H 1.08997 * 113.61198 * 334.57515 * 10 9 7 40 40 H 1.08994 * 113.61814 * 270.88533 * 11 10 9 41 41 H 1.08001 * 119.98965 * 359.97438 * 13 12 11 42 42 H 1.07997 * 120.01460 * 180.25614 * 14 13 12 43 43 H 1.08003 * 120.00742 * 179.97438 * 17 15 14 44 44 H 1.07996 * 119.99379 * 180.02562 * 18 17 15 45 45 H 1.09000 * 113.61578 * 25.34539 * 19 9 7 46 46 H 1.09001 * 113.61682 * 156.17118 * 19 9 7 47 47 H 0.96994 * 119.99909 * 264.99766 * 20 2 1 48 48 H 0.96998 * 119.99518 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5002 -0.8264 1.1904 6 6 4.1259 -1.9919 0.5610 7 6 4.2677 0.1492 1.7155 8 8 3.7496 1.1142 2.2363 9 6 5.7696 0.0408 1.6556 10 6 6.3659 0.4616 0.3019 11 6 6.4384 1.8900 0.8668 12 6 7.6963 2.6269 0.4852 13 6 8.9016 1.9524 0.4281 14 6 10.0549 2.6259 0.0727 15 6 10.0047 3.9795 -0.2148 16 9 11.1326 4.6403 -0.5561 17 6 8.7978 4.6552 -0.1518 18 6 7.6449 3.9784 0.1984 19 6 6.4992 1.2501 2.2640 20 7 2.0184 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8926 1.0406 -2.4242 23 6 2.6113 -0.6618 -3.5094 24 7 2.7374 -0.0050 -4.6430 25 14 3.0543 -2.4746 -3.4258 26 1 1.8564 -3.2921 -3.7453 27 1 4.1295 -2.7671 -4.4075 28 1 3.5291 -2.8056 -2.0583 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6055 -1.7198 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 4.2823 -2.7688 1.3095 35 1 3.4758 -2.3721 -0.2268 36 1 5.0852 -1.7020 0.1323 37 1 6.1394 -0.9190 2.0162 38 1 7.3425 0.0219 0.0995 39 1 5.6722 0.3567 -0.5323 40 1 5.5350 2.4746 0.6933 41 1 8.9414 0.8978 0.6575 42 1 10.9957 2.0979 0.0242 43 1 8.7576 5.7110 -0.3755 44 1 6.7034 4.5051 0.2472 45 1 5.9132 1.7818 3.0136 46 1 7.5118 1.0257 2.5992 47 1 2.2491 -1.6317 -1.1527 48 1 3.0601 -0.4624 -5.4351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331646939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:29 Heat of formation + Delta-G solvation = -34.287860 kcal Electronic energy + Delta-G solvation = -29321.941741 eV Core-core repulsion = 25291.799874 eV Total energy + Delta-G solvation = -4030.141867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.88849 -41.86791 -40.23765 -38.57141 -37.54851 -35.83022 -34.01983 -32.11604 -31.89848 -31.33365 -28.43614 -27.65423 -26.61628 -26.13419 -25.22258 -24.12524 -23.09416 -21.90419 -21.22370 -19.77851 -19.28019 -18.75446 -18.03426 -17.37182 -17.14289 -16.96799 -16.59334 -16.55889 -16.36252 -15.69873 -15.62339 -15.42790 -14.97508 -14.64007 -14.47119 -14.23408 -14.09134 -13.96504 -13.87147 -13.70153 -13.50372 -13.33024 -13.25762 -13.19348 -12.79523 -12.74615 -12.59037 -12.38694 -12.19534 -12.17327 -11.84228 -11.76594 -11.65032 -11.43403 -11.24065 -10.99990 -10.66012 -10.05647 -9.60019 -9.46266 -9.22066 -7.97590 -5.31331 0.14428 0.28288 1.34399 1.44990 1.52041 1.65001 2.13663 2.52457 2.58031 3.29256 3.34035 3.50170 3.51559 3.58069 3.66461 3.79617 3.84499 3.96581 3.99286 4.07620 4.24070 4.32509 4.35857 4.37104 4.45920 4.60047 4.63661 4.68727 4.71433 4.77822 4.85554 4.90163 4.94510 4.95938 5.05118 5.05618 5.09308 5.14470 5.16564 5.22788 5.26116 5.36650 5.43314 5.65194 5.67917 5.80386 5.93785 6.23664 6.48760 7.12037 7.25465 7.84702 8.09172 9.24532 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.003445 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.849287 B = 8125.486412 C = 9282.237240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.158 3.842 3 H 0.018 0.982 4 C 0.114 3.886 5 N -0.601 5.601 6 C 0.068 3.932 7 C 0.523 3.477 8 O -0.583 6.583 9 C -0.130 4.130 10 C -0.114 4.114 11 C -0.076 4.076 12 C -0.079 4.079 13 C -0.085 4.085 14 C -0.148 4.148 15 C 0.069 3.931 16 F -0.150 7.150 17 C -0.157 4.157 18 C -0.102 4.102 19 C -0.095 4.095 20 N -0.738 5.738 21 C -0.223 4.223 22 H 0.038 0.962 23 C -0.065 4.065 24 N -0.990 5.990 25 Si 0.950 3.050 26 H -0.286 1.286 27 H -0.301 1.301 28 H -0.222 1.222 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.163 0.837 42 H 0.157 0.843 43 H 0.143 0.857 44 H 0.130 0.870 45 H 0.065 0.935 46 H 0.121 0.879 47 H 0.368 0.632 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.193 -3.724 16.903 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.036 0.964 4 C -0.010 4.010 5 N -0.331 5.331 6 C -0.074 4.074 7 C 0.312 3.688 8 O -0.464 6.464 9 C -0.151 4.151 10 C -0.152 4.152 11 C -0.094 4.094 12 C -0.079 4.079 13 C -0.103 4.103 14 C -0.167 4.167 15 C 0.050 3.950 16 F -0.129 7.129 17 C -0.175 4.175 18 C -0.121 4.121 19 C -0.132 4.132 20 N -0.383 5.383 21 C -0.354 4.354 22 H 0.056 0.944 23 C -0.256 4.256 24 N -0.641 5.641 25 Si 0.777 3.223 26 H -0.213 1.213 27 H -0.228 1.228 28 H -0.146 1.146 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.155 0.845 38 H 0.145 0.855 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.180 0.820 42 H 0.175 0.825 43 H 0.161 0.839 44 H 0.148 0.852 45 H 0.084 0.916 46 H 0.139 0.861 47 H 0.204 0.796 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.954 -3.042 17.040 21.619 hybrid contribution -0.160 -0.011 -1.215 1.226 sum 12.794 -3.053 15.824 20.577 Atomic orbital electron populations 1.22211 0.96631 1.02004 1.00652 1.20729 0.93297 0.94753 0.86324 0.96370 1.21785 0.79678 1.02211 0.97332 1.47709 1.06488 1.21993 1.56942 1.22222 0.99302 0.87525 0.98338 1.20689 0.90075 0.81283 0.76752 1.90631 1.75944 1.32534 1.47279 1.22371 0.89907 1.02972 0.99871 1.23089 1.02389 0.94855 0.94823 1.21453 0.94568 0.95267 0.98160 1.19917 0.95199 0.93772 0.99048 1.21135 0.90091 1.01395 0.97642 1.21399 1.01174 0.92235 1.01884 1.17971 0.82301 0.91747 1.02949 1.91467 1.50002 1.81250 1.90162 1.21278 0.91431 1.01698 1.03127 1.21119 0.98196 0.94537 0.98203 1.22878 1.01380 0.94051 0.94930 1.42636 1.79985 1.09389 1.06338 1.18877 1.35190 0.93769 0.87590 0.94351 1.25523 1.02248 1.03030 0.94782 1.69924 1.54887 1.37967 1.01297 0.85573 0.77491 0.79869 0.79368 1.21260 1.22777 1.14551 0.91650 0.91335 0.95134 0.87996 0.89494 0.89246 0.91832 0.90270 0.84534 0.85538 0.93311 0.91473 0.81987 0.82508 0.83882 0.85240 0.91615 0.86066 0.79630 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.49 71.98 0.68 -4.54 16 2 C 0.16 6.01 3.20 44.99 0.14 6.16 16 3 H 0.02 0.83 8.08 -2.38 -0.02 0.81 16 4 C 0.11 3.32 5.05 86.38 0.44 3.76 16 5 N -0.60 -17.08 2.73 -846.76 -2.31 -19.39 16 6 C 0.07 1.57 9.75 127.77 1.25 2.82 16 7 C 0.52 15.78 6.93 87.66 0.61 16.38 16 8 O -0.58 -21.94 15.41 -3.03 -0.05 -21.98 16 9 C -0.13 -2.77 2.99 -11.01 -0.03 -2.81 16 10 C -0.11 -2.62 6.09 31.12 0.19 -2.43 16 11 C -0.08 -1.88 3.65 -11.01 -0.04 -1.92 16 12 C -0.08 -1.78 5.29 -19.86 -0.11 -1.88 16 13 C -0.09 -1.50 8.59 22.26 0.19 -1.31 16 14 C -0.15 -2.71 10.03 22.31 0.22 -2.48 16 15 C 0.07 1.54 7.30 22.38 0.16 1.70 16 16 F -0.15 -3.51 17.27 44.97 0.78 -2.73 16 17 C -0.16 -3.50 10.03 22.31 0.22 -3.28 16 18 C -0.10 -2.43 9.71 22.26 0.22 -2.22 16 19 C -0.09 -1.92 6.92 31.12 0.22 -1.70 16 20 N -0.74 -32.37 4.37 -322.91 -1.41 -33.78 16 21 C -0.22 -12.53 10.41 84.03 0.87 -11.66 16 22 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 23 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 24 N -0.99 -63.29 13.97 21.65 0.30 -62.99 16 25 Si 0.95 42.11 27.74 68.60 1.90 44.02 16 26 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 27 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.22 -7.86 4.90 99.48 0.49 -7.37 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 2.38 8.07 -2.39 -0.02 2.36 16 33 H 0.09 2.53 7.42 -2.39 -0.02 2.51 16 34 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.06 1.70 3.95 -2.39 -0.01 1.69 16 36 H 0.08 1.72 5.85 -2.39 -0.01 1.71 16 37 H 0.14 1.90 7.92 -2.39 -0.02 1.88 16 38 H 0.13 2.01 6.32 -2.39 -0.02 2.00 16 39 H 0.05 1.52 7.87 -2.39 -0.02 1.50 16 40 H 0.07 2.17 8.09 -2.39 -0.02 2.15 16 41 H 0.16 1.83 6.67 -2.91 -0.02 1.81 16 42 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.13 3.03 8.05 -2.91 -0.02 3.00 16 45 H 0.07 1.61 7.41 -2.39 -0.02 1.59 16 46 H 0.12 1.64 7.72 -2.39 -0.02 1.62 16 47 H 0.37 14.63 3.49 -92.71 -0.32 14.31 16 48 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -75.98 383.49 5.34 -70.63 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.43 Total: 34.91 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 5.70 Total: -8.68 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -3.42 Total: -116.16 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.98 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.73 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.90 Total: 44.02 kcal Total: -75.98 5.34 -70.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331646939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.344 kcal (2) G-P(sol) polarization free energy of solvation -75.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds