Wall clock time and date at job start Tue Mar 31 2020 18:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00095 * 2 1 4 4 C 1.52993 * 109.47375 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47097 * 65.00205 * 4 3 2 6 6 C 1.36939 * 120.00213 * 270.00475 * 5 4 3 7 7 H 1.08000 * 120.00141 * 145.87970 * 6 5 4 8 8 C 1.38813 * 119.99631 * 325.87308 * 6 5 4 9 9 N 1.31620 * 120.00378 * 336.94902 * 8 6 5 10 10 Si 1.86802 * 119.99871 * 156.95055 * 8 6 5 11 11 H 1.48508 * 109.46846 * 60.00037 * 10 8 6 12 12 H 1.48494 * 109.47332 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47200 * 300.00084 * 10 8 6 14 14 C 1.46503 * 120.00137 * 89.99880 * 5 4 3 15 15 C 1.53004 * 109.46687 * 89.40200 * 14 5 4 16 16 N 1.46503 * 109.46687 * 180.02562 * 15 14 5 17 17 C 1.34785 * 119.99795 * 179.97438 * 16 15 14 18 18 O 1.21277 * 119.99928 * 0.02562 * 17 16 15 19 19 C 1.50691 * 119.99970 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47261 * 180.02562 * 19 17 16 21 21 H 1.08991 * 110.01694 * 53.60784 * 20 19 17 22 22 C 1.54267 * 110.03396 * 175.00176 * 20 19 17 23 23 C 1.54894 * 104.19794 * 142.93998 * 22 20 19 24 24 C 1.54888 * 102.74799 * 322.05979 * 23 22 20 25 25 C 1.53880 * 110.07101 * 292.19313 * 20 19 17 26 26 F 1.39894 * 110.03105 * 121.40984 * 25 20 19 27 27 F 1.39897 * 110.02934 * 359.97438 * 25 20 19 28 28 H 1.08999 * 109.46836 * 299.99127 * 1 2 3 29 29 H 1.09001 * 109.47346 * 59.99841 * 1 2 3 30 30 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46856 * 60.00117 * 3 2 1 32 32 H 1.09001 * 109.47474 * 300.00559 * 3 2 1 33 33 H 1.09006 * 109.47143 * 305.00338 * 4 3 2 34 34 H 1.08999 * 109.47542 * 185.00467 * 4 3 2 35 35 H 0.97001 * 120.00286 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.47057 * 329.40942 * 14 5 4 37 37 H 1.08993 * 109.47529 * 209.40678 * 14 5 4 38 38 H 1.09000 * 109.47237 * 60.00746 * 15 14 5 39 39 H 1.08996 * 109.47892 * 300.00105 * 15 14 5 40 40 H 0.96996 * 120.00537 * 0.02562 * 16 15 14 41 41 H 1.09004 * 109.47558 * 60.00165 * 19 17 16 42 42 H 1.09001 * 109.47374 * 300.00315 * 19 17 16 43 43 H 1.08999 * 110.48695 * 24.26346 * 22 20 19 44 44 H 1.08999 * 110.48908 * 261.61891 * 22 20 19 45 45 H 1.08991 * 110.76028 * 203.74060 * 23 22 20 46 46 H 1.09003 * 110.91165 * 80.44145 * 23 22 20 47 47 H 1.09004 * 110.48688 * 156.61416 * 24 23 22 48 48 H 1.08997 * 110.48450 * 279.26250 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0967 -0.7970 -1.3370 7 1 3.8746 -1.3024 -2.2652 8 6 4.5050 -1.5273 -0.2294 9 7 5.1951 -0.9424 0.7267 10 14 4.0750 -3.3402 -0.0958 11 1 4.6618 -4.0742 -1.2457 12 1 4.6231 -3.8869 1.1714 13 1 2.5988 -3.5010 -0.1072 14 6 4.2863 1.4008 -2.4148 15 6 5.7630 1.7993 -2.3761 16 7 6.0735 2.6361 -3.5379 17 6 7.3237 3.1083 -3.7134 18 8 8.1916 2.8400 -2.9100 19 6 7.6429 3.9694 -4.9081 20 6 9.1196 4.3679 -4.8695 21 1 9.7436 3.4790 -4.7778 22 6 9.4910 5.1446 -6.1496 23 6 10.4879 6.2254 -5.6625 24 6 9.8996 6.6397 -4.2909 25 6 9.3794 5.3185 -3.6877 26 9 10.3422 4.7696 -2.8339 27 9 8.1907 5.5472 -2.9864 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5681 0.8409 34 1 3.9785 2.1764 0.0890 35 1 5.4807 -1.4529 1.5005 36 1 3.6672 2.2977 -2.3929 37 1 4.0845 0.8423 -3.3288 38 1 6.3821 0.9025 -2.3981 39 1 5.9649 2.3579 -1.4622 40 1 5.3793 2.8510 -4.1803 41 1 7.0236 4.8661 -4.8856 42 1 7.4413 3.4115 -5.8225 43 1 8.6061 5.6099 -6.5838 44 1 9.9687 4.4830 -6.8722 45 1 10.5043 7.0728 -6.3477 46 1 11.4876 5.8073 -5.5436 47 1 10.6755 7.0690 -3.6570 48 1 9.0807 7.3464 -4.4249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332922965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:52 Heat of formation + Delta-G solvation = -169.521562 kcal Electronic energy + Delta-G solvation = -30018.730779 eV Core-core repulsion = 25551.955514 eV Total energy + Delta-G solvation = -4466.775265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.74570 -46.79967 -39.42512 -37.57718 -37.19407 -35.69709 -33.98795 -32.05056 -31.25578 -29.47526 -28.15875 -27.46076 -25.74468 -25.63609 -23.53301 -22.11340 -21.55349 -20.61971 -20.14782 -19.63092 -17.70089 -16.94662 -16.80253 -16.54095 -16.08992 -15.68239 -15.44452 -15.08861 -14.97071 -14.53237 -14.46973 -14.21068 -14.01311 -13.95062 -13.56606 -13.43049 -13.18028 -13.05565 -12.92431 -12.71766 -12.24197 -11.90879 -11.81223 -11.75203 -11.65724 -11.56207 -11.48358 -11.08552 -11.04616 -10.89914 -10.73554 -10.63306 -10.55354 -10.40756 -10.07682 -9.90903 -9.68861 -9.44913 -8.80146 -8.48399 -8.36406 -6.57997 -5.67530 -3.21099 3.03442 3.48726 3.50426 3.54384 3.61081 3.69620 3.81756 4.07076 4.21808 4.61178 4.67920 4.72137 4.78188 4.89840 4.99867 5.08775 5.11732 5.30817 5.36285 5.42276 5.45080 5.50702 5.55808 5.58516 5.64425 5.76595 5.80455 5.82145 5.97188 5.98778 6.05862 6.10706 6.16413 6.28205 6.36395 6.63054 6.71527 6.84412 6.90032 7.11767 7.72271 7.90972 7.93987 8.10498 8.59638 8.66340 9.25139 9.90630 10.42572 11.34371 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.002531 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.112233 B =11059.828855 C =11637.662207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.049 3.951 4 C 0.138 3.862 5 N -0.570 5.570 6 C -0.247 4.247 7 H 0.059 0.941 8 C 0.019 3.981 9 N -0.888 5.888 10 Si 0.899 3.101 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.281 1.281 14 C 0.140 3.860 15 C 0.099 3.901 16 N -0.727 5.727 17 C 0.504 3.496 18 O -0.534 6.534 19 C -0.136 4.136 20 C -0.118 4.118 21 H 0.108 0.892 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.165 4.165 25 C 0.294 3.706 26 F -0.191 7.191 27 F -0.196 7.196 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.110 0.890 34 H 0.040 0.960 35 H 0.254 0.746 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.393 0.607 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 16.064 -14.189 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.030 4.030 4 C 0.011 3.989 5 N -0.290 5.290 6 C -0.377 4.377 7 H 0.077 0.923 8 C -0.181 4.181 9 N -0.531 5.531 10 Si 0.729 3.271 11 H -0.212 1.212 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.012 3.988 15 C -0.026 4.026 16 N -0.378 5.378 17 C 0.289 3.711 18 O -0.411 6.411 19 C -0.176 4.176 20 C -0.138 4.138 21 H 0.126 0.874 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.203 4.203 25 C 0.257 3.743 26 F -0.171 7.171 27 F -0.177 7.177 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.127 0.873 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.225 0.775 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.069 15.582 -13.366 20.929 hybrid contribution -0.913 -0.592 0.133 1.096 sum 3.156 14.990 -13.234 20.244 Atomic orbital electron populations 1.22632 0.84365 1.01443 0.98337 1.88238 1.16443 1.27618 1.94793 1.23376 0.98773 0.84128 0.96759 1.21119 0.87594 0.96851 0.93330 1.43687 1.74426 1.02668 1.08177 1.18840 1.39315 0.81204 0.98316 0.92316 1.24976 0.96655 0.97773 0.98660 1.69944 1.35887 1.36214 1.11080 0.86432 0.78643 0.85303 0.76676 1.21170 1.21931 1.20716 1.21090 0.90906 0.94049 0.92759 1.22425 1.00171 0.93730 0.86291 1.46178 1.10501 1.52832 1.28262 1.20447 0.83017 0.80551 0.87104 1.90758 1.46491 1.58516 1.45304 1.21712 0.96166 1.01111 0.98601 1.22602 0.97886 0.99598 0.93679 0.87364 1.22440 0.99750 0.97397 0.96005 1.22461 0.99261 0.99060 0.95216 1.23408 1.02917 0.95637 0.98376 1.21582 0.74529 0.93624 0.84532 1.93031 1.63452 1.87301 1.73360 1.92990 1.47935 1.95216 1.81530 0.95565 0.95356 0.90773 0.95682 0.95601 0.87301 0.94186 0.93581 0.94569 0.93357 0.91137 0.92409 0.77486 0.88364 0.88149 0.90341 0.90069 0.90052 0.90432 0.89092 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.90 10.18 -35.23 -0.36 -8.25 16 3 C 0.05 1.00 6.28 37.15 0.23 1.23 16 4 C 0.14 3.24 5.73 -4.05 -0.02 3.21 16 5 N -0.57 -13.95 2.43 -173.24 -0.42 -14.37 16 6 C -0.25 -6.78 8.98 -15.06 -0.14 -6.91 16 7 H 0.06 1.62 7.93 -52.49 -0.42 1.20 16 8 C 0.02 0.55 4.95 -17.43 -0.09 0.46 16 9 N -0.89 -26.14 11.33 55.49 0.63 -25.51 16 10 Si 0.90 22.58 29.61 -169.99 -5.03 17.55 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.14 2.79 5.78 -4.04 -0.02 2.77 16 15 C 0.10 2.02 6.00 -4.04 -0.02 2.00 16 16 N -0.73 -11.41 5.56 -60.29 -0.33 -11.74 16 17 C 0.50 8.21 6.73 -10.99 -0.07 8.13 16 18 O -0.53 -11.36 14.58 5.56 0.08 -11.28 16 19 C -0.14 -1.44 4.63 -27.89 -0.13 -1.57 16 20 C -0.12 -1.27 2.39 -89.50 -0.21 -1.48 16 21 H 0.11 1.35 7.80 -51.93 -0.41 0.94 16 22 C -0.12 -0.78 6.36 -25.07 -0.16 -0.94 16 23 C -0.12 -0.76 6.91 -24.74 -0.17 -0.94 16 24 C -0.17 -1.39 6.40 -25.07 -0.16 -1.55 16 25 C 0.29 3.77 1.80 -25.61 -0.05 3.72 16 26 F -0.19 -3.11 16.76 2.25 0.04 -3.07 16 27 F -0.20 -3.01 14.10 2.25 0.03 -2.98 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.11 2.97 5.33 -51.93 -0.28 2.69 16 34 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 37 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 38 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.39 4.66 8.47 -40.82 -0.35 4.31 16 41 H 0.10 0.88 7.63 -51.93 -0.40 0.48 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.40 7.86 -51.93 -0.41 0.00 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 48 H 0.10 0.68 8.12 -51.93 -0.42 0.26 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -35.08 393.11 -7.48 -42.56 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.13 Total: 1.43 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 0.10 Total: 9.75 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.13 Total: -51.63 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.28 Total: -19.54 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.07 Total: -6.05 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.08 -7.48 -42.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332922965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.961 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds