Wall clock time and date at job start Tue Mar 31 2020 18:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00095 * 2 1 4 4 C 1.52993 * 109.47375 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47097 * 65.00205 * 4 3 2 6 6 C 1.36939 * 120.00213 * 270.00475 * 5 4 3 7 7 H 1.08000 * 120.00141 * 145.87970 * 6 5 4 8 8 C 1.38813 * 119.99631 * 325.87308 * 6 5 4 9 9 N 1.31620 * 120.00378 * 336.94902 * 8 6 5 10 10 Si 1.86802 * 119.99871 * 156.95055 * 8 6 5 11 11 H 1.48508 * 109.46846 * 60.00037 * 10 8 6 12 12 H 1.48494 * 109.47332 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47200 * 300.00084 * 10 8 6 14 14 C 1.46503 * 120.00137 * 89.99880 * 5 4 3 15 15 C 1.53004 * 109.46687 * 89.40200 * 14 5 4 16 16 N 1.46503 * 109.46687 * 180.02562 * 15 14 5 17 17 C 1.34785 * 119.99795 * 179.97438 * 16 15 14 18 18 O 1.21277 * 119.99928 * 0.02562 * 17 16 15 19 19 C 1.50691 * 119.99970 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47261 * 180.02562 * 19 17 16 21 21 H 1.08991 * 110.01694 * 53.60784 * 20 19 17 22 22 C 1.54267 * 110.03396 * 175.00176 * 20 19 17 23 23 C 1.54894 * 104.19794 * 142.93998 * 22 20 19 24 24 C 1.54888 * 102.74799 * 322.05979 * 23 22 20 25 25 C 1.53880 * 110.07101 * 292.19313 * 20 19 17 26 26 F 1.39894 * 110.03105 * 121.40984 * 25 20 19 27 27 F 1.39897 * 110.02934 * 359.97438 * 25 20 19 28 28 H 1.08999 * 109.46836 * 299.99127 * 1 2 3 29 29 H 1.09001 * 109.47346 * 59.99841 * 1 2 3 30 30 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46856 * 60.00117 * 3 2 1 32 32 H 1.09001 * 109.47474 * 300.00559 * 3 2 1 33 33 H 1.09006 * 109.47143 * 305.00338 * 4 3 2 34 34 H 1.08999 * 109.47542 * 185.00467 * 4 3 2 35 35 H 0.97001 * 120.00286 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.47057 * 329.40942 * 14 5 4 37 37 H 1.08993 * 109.47529 * 209.40678 * 14 5 4 38 38 H 1.09000 * 109.47237 * 60.00746 * 15 14 5 39 39 H 1.08996 * 109.47892 * 300.00105 * 15 14 5 40 40 H 0.96996 * 120.00537 * 0.02562 * 16 15 14 41 41 H 1.09004 * 109.47558 * 60.00165 * 19 17 16 42 42 H 1.09001 * 109.47374 * 300.00315 * 19 17 16 43 43 H 1.08999 * 110.48695 * 24.26346 * 22 20 19 44 44 H 1.08999 * 110.48908 * 261.61891 * 22 20 19 45 45 H 1.08991 * 110.76028 * 203.74060 * 23 22 20 46 46 H 1.09003 * 110.91165 * 80.44145 * 23 22 20 47 47 H 1.09004 * 110.48688 * 156.61416 * 24 23 22 48 48 H 1.08997 * 110.48450 * 279.26250 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0967 -0.7970 -1.3370 7 1 3.8746 -1.3024 -2.2652 8 6 4.5050 -1.5273 -0.2294 9 7 5.1951 -0.9424 0.7267 10 14 4.0750 -3.3402 -0.0958 11 1 4.6618 -4.0742 -1.2457 12 1 4.6231 -3.8869 1.1714 13 1 2.5988 -3.5010 -0.1072 14 6 4.2863 1.4008 -2.4148 15 6 5.7630 1.7993 -2.3761 16 7 6.0735 2.6361 -3.5379 17 6 7.3237 3.1083 -3.7134 18 8 8.1916 2.8400 -2.9100 19 6 7.6429 3.9694 -4.9081 20 6 9.1196 4.3679 -4.8695 21 1 9.7436 3.4790 -4.7778 22 6 9.4910 5.1446 -6.1496 23 6 10.4879 6.2254 -5.6625 24 6 9.8996 6.6397 -4.2909 25 6 9.3794 5.3185 -3.6877 26 9 10.3422 4.7696 -2.8339 27 9 8.1907 5.5472 -2.9864 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5681 0.8409 34 1 3.9785 2.1764 0.0890 35 1 5.4807 -1.4529 1.5005 36 1 3.6672 2.2977 -2.3929 37 1 4.0845 0.8423 -3.3288 38 1 6.3821 0.9025 -2.3981 39 1 5.9649 2.3579 -1.4622 40 1 5.3793 2.8510 -4.1803 41 1 7.0236 4.8661 -4.8856 42 1 7.4413 3.4115 -5.8225 43 1 8.6061 5.6099 -6.5838 44 1 9.9687 4.4830 -6.8722 45 1 10.5043 7.0728 -6.3477 46 1 11.4876 5.8073 -5.5436 47 1 10.6755 7.0690 -3.6570 48 1 9.0807 7.3464 -4.4249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332922965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:51 Heat of formation + Delta-G solvation = -193.907970 kcal Electronic energy + Delta-G solvation = -30019.788253 eV Core-core repulsion = 25551.955514 eV Total energy + Delta-G solvation = -4467.832739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.81698 -47.91880 -40.73143 -38.90690 -38.30927 -37.38898 -35.61822 -33.40415 -32.79562 -31.05374 -29.25941 -28.69484 -27.14181 -26.85182 -25.31319 -23.74472 -22.20930 -21.89722 -21.66804 -20.85473 -18.74993 -18.63758 -17.95188 -17.81554 -17.25984 -17.09476 -16.90312 -16.61689 -16.36189 -16.30283 -15.62666 -15.42648 -15.37737 -15.18430 -14.92343 -14.69751 -14.58146 -14.35059 -14.23009 -13.77014 -13.58178 -13.42367 -13.18166 -12.91751 -12.78423 -12.69522 -12.51112 -12.46123 -12.37357 -12.25604 -12.16991 -12.10566 -11.95535 -11.76799 -11.56209 -11.53203 -11.40844 -10.85101 -10.47146 -10.32213 -10.00570 -8.60225 -7.77522 -5.33905 1.46062 1.51022 1.57242 1.75267 2.25425 2.58971 2.89269 3.06127 3.21746 3.29534 3.36188 3.40375 3.71672 3.89754 4.02941 4.17382 4.26190 4.31872 4.34610 4.34707 4.44115 4.49942 4.55026 4.61945 4.63233 4.67311 4.68662 4.74099 4.75939 4.83674 4.86934 4.92500 4.93877 5.09634 5.11893 5.12867 5.19241 5.25100 5.37872 5.55865 5.70633 5.83088 6.44933 6.67370 6.68254 7.20475 7.40553 7.90421 8.37679 9.20404 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.002531 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.112233 B =11059.828855 C =11637.662207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.059 3.941 4 C 0.134 3.866 5 N -0.586 5.586 6 C -0.244 4.244 7 H 0.056 0.944 8 C -0.031 4.031 9 N -0.921 5.921 10 Si 0.951 3.049 11 H -0.278 1.278 12 H -0.299 1.299 13 H -0.280 1.280 14 C 0.145 3.855 15 C 0.122 3.878 16 N -0.713 5.713 17 C 0.494 3.506 18 O -0.592 6.592 19 C -0.124 4.124 20 C -0.121 4.121 21 H 0.080 0.920 22 C -0.107 4.107 23 C -0.117 4.117 24 C -0.158 4.158 25 C 0.265 3.735 26 F -0.222 7.222 27 F -0.216 7.216 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.247 0.753 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.023 0.977 39 H 0.024 0.976 40 H 0.416 0.584 41 H 0.126 0.874 42 H 0.140 0.860 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 18.026 -17.574 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.020 4.020 4 C 0.008 3.992 5 N -0.306 5.306 6 C -0.374 4.374 7 H 0.074 0.926 8 C -0.228 4.228 9 N -0.566 5.566 10 Si 0.781 3.219 11 H -0.204 1.204 12 H -0.225 1.225 13 H -0.206 1.206 14 C 0.018 3.982 15 C -0.005 4.005 16 N -0.366 5.366 17 C 0.282 3.718 18 O -0.473 6.473 19 C -0.163 4.163 20 C -0.140 4.140 21 H 0.099 0.901 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.195 4.195 25 C 0.230 3.770 26 F -0.203 7.203 27 F -0.197 7.197 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.253 0.747 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.130 0.870 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.354 17.573 -16.812 24.434 hybrid contribution -0.412 -1.154 1.181 1.702 sum 1.942 16.419 -15.631 22.753 Atomic orbital electron populations 1.22822 0.81579 1.02537 1.00147 1.88155 1.19602 1.28668 1.95192 1.23149 0.96124 0.84054 0.98632 1.21031 0.90250 0.96143 0.91790 1.43879 1.74916 1.02377 1.09432 1.19036 1.37587 0.82915 0.97902 0.92626 1.25586 0.97335 1.00972 0.98885 1.70099 1.37742 1.37193 1.11564 0.85597 0.78170 0.81774 0.76395 1.20389 1.22547 1.20582 1.21166 0.90571 0.94860 0.91555 1.21800 0.99779 0.91993 0.86919 1.45921 1.11524 1.51873 1.27287 1.21600 0.82026 0.80103 0.88064 1.90743 1.48183 1.60579 1.47788 1.21799 0.96543 1.01227 0.96757 1.22677 0.97474 0.98820 0.95076 0.90131 1.22473 1.00998 0.97130 0.93767 1.22514 0.98727 1.00012 0.94200 1.23445 1.03451 0.93406 0.99235 1.22540 0.73513 0.96597 0.84398 1.92959 1.64653 1.88092 1.74596 1.92934 1.49152 1.95439 1.82210 0.93597 0.93542 0.90176 0.93521 0.93685 0.91198 0.93499 0.94412 0.91237 0.92077 0.95881 0.95799 0.74679 0.85642 0.84249 0.87625 0.88519 0.86962 0.90995 0.89332 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.29 10.18 -148.98 -1.52 -18.81 16 3 C 0.06 2.32 6.28 71.98 0.45 2.77 16 4 C 0.13 6.38 5.73 86.38 0.49 6.87 16 5 N -0.59 -28.87 2.43 -702.00 -1.71 -30.58 16 6 C -0.24 -13.56 8.98 84.03 0.75 -12.81 16 7 H 0.06 3.07 7.93 -2.91 -0.02 3.05 16 8 C -0.03 -1.81 4.95 84.86 0.42 -1.39 16 9 N -0.92 -56.57 11.33 21.65 0.25 -56.33 16 10 Si 0.95 47.43 29.61 68.60 2.03 49.46 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 13 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 14 C 0.15 5.69 5.78 86.38 0.50 6.19 16 15 C 0.12 5.13 6.00 86.38 0.52 5.65 16 16 N -0.71 -21.86 5.56 -463.05 -2.57 -24.44 16 17 C 0.49 16.04 6.73 87.65 0.59 16.63 16 18 O -0.59 -26.57 14.58 -3.02 -0.04 -26.62 16 19 C -0.12 -2.31 4.63 29.84 0.14 -2.17 16 20 C -0.12 -2.42 2.39 -10.07 -0.02 -2.45 16 21 H 0.08 2.05 7.80 -2.39 -0.02 2.03 16 22 C -0.11 -0.98 6.36 31.67 0.20 -0.78 16 23 C -0.12 -1.08 6.91 31.89 0.22 -0.86 16 24 C -0.16 -2.36 6.40 31.67 0.20 -2.15 16 25 C 0.27 6.79 1.80 31.32 0.06 6.85 16 26 F -0.22 -7.71 16.76 44.97 0.75 -6.96 16 27 F -0.22 -6.70 14.10 44.97 0.63 -6.06 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 3.96 5.33 -2.38 -0.01 3.95 16 34 H 0.05 2.09 8.07 -2.39 -0.02 2.07 16 35 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.07 2.28 8.08 -2.39 -0.02 2.26 16 37 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 38 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.42 8.73 8.47 -92.71 -0.79 7.95 16 41 H 0.13 1.74 7.63 -2.39 -0.02 1.72 16 42 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.11 0.47 7.86 -2.39 -0.02 0.45 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 45 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 1.35 8.11 -2.38 -0.02 1.33 16 48 H 0.11 1.28 8.12 -2.39 -0.02 1.26 16 Total: -1.00 -83.70 393.11 3.76 -79.94 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.16 Total: 15.97 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 5.77 Total: 24.42 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.03 Total: -111.34 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.56 Total: -45.43 kcal Atomic # 9 Polarization: -14.40 SS G_CDS: 1.39 Total: -13.02 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -83.70 3.76 -79.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332922965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.967 kcal (2) G-P(sol) polarization free energy of solvation -83.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds