Wall clock time and date at job start Tue Mar 31 2020 19:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00445 * 2 1 4 4 H 1.48489 * 109.47388 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46956 * 299.99890 * 3 2 1 6 6 H 1.48502 * 109.46883 * 59.99362 * 3 2 1 7 7 C 1.37875 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00035 * 175.10792 * 7 2 1 9 9 C 1.50693 * 120.00343 * 355.38326 * 7 2 1 10 10 C 1.53001 * 115.55167 * 275.03446 * 9 7 2 11 11 N 1.46504 * 109.47174 * 305.58201 * 10 9 7 12 12 C 1.34777 * 119.99824 * 184.84176 * 11 10 9 13 13 O 1.21345 * 120.00492 * 5.03324 * 12 11 10 14 14 C 1.49455 * 119.99761 * 185.04308 * 12 11 10 15 15 O 1.21348 * 119.99813 * 4.34601 * 14 12 11 16 16 N 1.34773 * 120.00190 * 184.34448 * 14 12 11 17 17 C 1.46506 * 119.99550 * 0.35530 * 16 14 12 18 18 C 1.52999 * 109.47148 * 79.95181 * 17 16 14 19 19 C 1.52999 * 109.46905 * 179.97438 * 18 17 16 20 20 C 1.53004 * 117.49820 * 243.62098 * 19 18 17 21 21 C 1.52995 * 60.00028 * 252.51030 * 20 19 18 22 22 C 1.46497 * 120.00202 * 180.35223 * 16 14 12 23 23 C 1.52998 * 109.47242 * 94.81993 * 22 16 14 24 24 C 1.52999 * 117.49981 * 243.74840 * 23 22 16 25 25 C 1.53000 * 117.50345 * 175.08876 * 23 22 16 26 26 C 1.53001 * 117.50144 * 129.36465 * 9 7 2 27 27 C 1.52997 * 117.50157 * 60.70436 * 9 7 2 28 28 H 0.97003 * 119.99515 * 5.00735 * 1 2 3 29 29 H 1.09005 * 109.47011 * 65.57791 * 10 9 7 30 30 H 1.09001 * 109.47643 * 185.58039 * 10 9 7 31 31 H 0.96996 * 120.00189 * 4.83129 * 11 10 9 32 32 H 1.09008 * 109.46826 * 199.95137 * 17 16 14 33 33 H 1.09000 * 109.46983 * 319.94785 * 17 16 14 34 34 H 1.08998 * 109.47208 * 299.99742 * 18 17 16 35 35 H 1.09000 * 109.47502 * 59.99922 * 18 17 16 36 36 H 1.09003 * 115.55301 * 29.32953 * 19 18 17 37 37 H 1.08998 * 117.49750 * 0.02562 * 20 19 18 38 38 H 1.08999 * 117.49821 * 145.02391 * 20 19 18 39 39 H 1.09005 * 117.50192 * 252.51286 * 21 20 19 40 40 H 1.09005 * 117.50175 * 107.48692 * 21 20 19 41 41 H 1.08999 * 109.47262 * 214.81770 * 22 16 14 42 42 H 1.09000 * 109.47366 * 334.81671 * 22 16 14 43 43 H 1.08999 * 115.54813 * 29.41236 * 23 22 16 44 44 H 1.09001 * 117.49760 * 0.02562 * 24 23 22 45 45 H 1.09005 * 117.49971 * 145.01357 * 24 23 22 46 46 H 1.08990 * 117.49986 * 214.98180 * 25 23 22 47 47 H 1.09003 * 117.49311 * 359.97438 * 25 23 22 48 48 H 1.09001 * 117.49710 * 359.97438 * 26 9 7 49 49 H 1.09003 * 117.49862 * 145.01899 * 26 9 7 50 50 H 1.08997 * 117.50168 * 214.98073 * 27 9 7 51 51 H 1.09007 * 117.49687 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0816 -1.1959 -0.0792 9 6 1.2546 -2.4970 0.1062 10 6 0.9173 -2.9509 1.5278 11 7 2.1426 -2.9960 2.3296 12 6 2.1044 -3.4640 3.5930 13 8 1.0762 -3.9323 4.0357 14 6 3.3283 -3.4058 4.4488 15 8 4.3332 -2.8665 4.0344 16 7 3.3158 -3.9523 5.6807 17 6 2.1049 -4.6102 6.1779 18 6 2.0135 -6.0205 5.5918 19 6 0.7492 -6.7078 6.1115 20 6 0.9291 -7.9533 6.9818 21 6 0.4138 -8.0900 5.5477 22 6 4.5130 -3.8885 6.5225 23 6 4.4186 -2.6774 7.4526 24 6 5.4614 -1.5712 7.2803 25 6 5.5237 -2.4997 8.4957 26 6 1.5741 -3.5816 -0.9246 27 6 0.2464 -2.8234 -0.9974 28 1 -0.4849 0.8369 -0.0733 29 1 0.2152 -2.2483 1.9766 30 1 0.4676 -3.9433 1.4954 31 1 2.9815 -2.6893 1.9513 32 1 2.1447 -4.6706 7.2655 33 1 1.2293 -4.0345 5.8778 34 1 1.9736 -5.9602 4.5042 35 1 2.8890 -6.5962 5.8919 36 1 -0.0834 -6.0448 6.3471 37 1 1.9481 -8.2828 7.1844 38 1 0.2149 -8.1099 7.7902 39 1 -0.6394 -8.3365 5.4126 40 1 1.0939 -8.5097 4.8064 41 1 4.5877 -4.7986 7.1176 42 1 5.3965 -3.7937 5.8912 43 1 3.4088 -2.3778 7.7332 44 1 6.2146 -1.7061 6.5040 45 1 5.1378 -0.5439 7.4479 46 1 5.2411 -2.0829 9.4623 47 1 6.3179 -3.2459 8.5195 48 1 2.3264 -3.3526 -1.6794 49 1 1.5438 -4.6185 -0.5899 50 1 -0.6569 -3.3617 -0.7107 51 1 0.1252 -2.0954 -1.7997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347618087.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:58 Heat of formation + Delta-G solvation = 7.375292 kcal Electronic energy + Delta-G solvation = -29596.635957 eV Core-core repulsion = 25691.761045 eV Total energy + Delta-G solvation = -3904.874912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.57087 -38.44595 -37.74431 -37.28809 -36.72616 -35.39033 -33.25124 -31.98672 -30.51343 -28.01778 -26.62107 -25.38647 -24.18614 -22.65946 -22.45531 -22.38161 -21.16514 -20.74496 -20.36692 -19.70934 -19.03361 -17.38474 -16.99588 -16.15178 -15.99252 -15.65156 -15.30290 -14.96334 -14.84913 -14.57092 -14.54218 -14.19517 -13.86153 -13.77265 -13.39328 -13.09733 -12.69144 -12.61114 -12.41860 -11.94766 -11.80394 -11.69890 -11.64093 -11.62434 -11.42300 -11.36194 -11.00242 -10.95534 -10.78937 -10.60371 -10.50796 -10.37679 -10.24158 -10.11908 -9.88869 -9.58041 -9.07716 -8.98133 -8.68784 -8.54116 -8.38076 -8.10971 -6.09917 -4.19657 1.83899 2.61930 3.25643 3.35088 3.39297 3.61583 3.61989 3.75703 3.90735 4.35523 4.56039 4.65134 4.75700 4.83146 4.86489 4.87475 4.91654 5.08962 5.18261 5.20535 5.31483 5.33536 5.36480 5.46044 5.51777 5.53609 5.61455 5.67521 5.80635 5.82323 5.96876 5.97370 6.00587 6.03325 6.06498 6.14522 6.27086 6.32850 6.42066 6.47841 6.50927 6.68659 6.78159 7.06451 7.08599 7.19014 7.31203 7.49671 7.80252 7.84685 8.21889 8.30806 8.59485 8.83022 9.48614 10.97059 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.003757 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.116448 B = 7451.928084 C = 9824.499203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.022 3.978 10 C 0.161 3.839 11 N -0.663 5.663 12 C 0.493 3.507 13 O -0.531 6.531 14 C 0.507 3.493 15 O -0.517 6.517 16 N -0.588 5.588 17 C 0.103 3.897 18 C -0.096 4.096 19 C -0.137 4.137 20 C -0.186 4.186 21 C -0.180 4.180 22 C 0.143 3.857 23 C -0.172 4.172 24 C -0.171 4.171 25 C -0.176 4.176 26 C -0.210 4.210 27 C -0.140 4.140 28 H 0.261 0.739 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.414 0.586 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -11.295 15.470 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.129 4.129 3 Si 0.716 3.284 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.021 3.979 10 C 0.038 3.962 11 N -0.313 5.313 12 C 0.273 3.727 13 O -0.411 6.411 14 C 0.290 3.710 15 O -0.392 6.392 16 N -0.321 5.321 17 C -0.019 4.019 18 C -0.134 4.134 19 C -0.156 4.156 20 C -0.223 4.223 21 C -0.217 4.217 22 C 0.021 3.979 23 C -0.191 4.191 24 C -0.208 4.208 25 C -0.214 4.214 26 C -0.248 4.248 27 C -0.179 4.179 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.251 0.749 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.820 -11.171 15.580 19.768 hybrid contribution 0.652 1.126 -0.154 1.310 sum 5.471 -10.045 15.427 19.205 Atomic orbital electron populations 1.69998 1.05878 1.26802 1.48355 1.24974 0.94815 0.98996 0.94126 0.86581 0.80437 0.83732 0.77611 1.19502 1.21012 1.20927 1.20403 0.92823 0.88475 1.52153 0.91955 1.19027 0.99593 0.93542 0.85761 1.21118 0.84361 0.98804 0.91893 1.45893 1.14538 1.59465 1.11409 1.19903 0.88435 0.80699 0.83654 1.90624 1.32737 1.45672 1.72049 1.20542 0.88902 0.79011 0.82529 1.90739 1.33760 1.42192 1.72492 1.47777 1.14320 1.55465 1.14571 1.22110 0.87990 0.93792 0.98024 1.21482 0.95203 0.95014 1.01731 1.22135 0.99936 0.90203 1.03281 1.23046 1.02099 1.03104 0.94098 1.22918 1.01776 1.00558 0.96445 1.21103 0.88322 0.96521 0.91982 1.22730 0.96006 0.99024 1.01325 1.23034 1.01953 0.95775 1.00071 1.22942 1.01005 1.03354 0.94097 1.23063 1.00667 0.95531 1.05503 1.22462 0.90775 1.01313 1.03313 0.92926 0.91045 0.93445 0.74865 0.91043 0.86708 0.90699 0.92649 0.87450 0.89150 0.89155 0.88943 0.89042 0.90068 0.89301 0.87599 0.88342 0.88947 0.88837 0.88755 0.90291 0.91667 0.91775 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.90 12.65 55.43 0.70 -23.20 16 2 C 0.08 1.98 5.43 -17.82 -0.10 1.89 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.50 -12.89 8.07 -34.44 -0.28 -13.17 16 8 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 9 C 0.02 0.50 1.62 -155.66 -0.25 0.25 16 10 C 0.16 3.51 5.60 -4.04 -0.02 3.49 16 11 N -0.66 -13.36 5.40 -60.72 -0.33 -13.69 16 12 C 0.49 9.15 7.35 -11.58 -0.09 9.06 16 13 O -0.53 -9.96 11.74 5.50 0.06 -9.89 16 14 C 0.51 8.57 7.64 -11.58 -0.09 8.48 16 15 O -0.52 -9.81 16.00 5.50 0.09 -9.72 16 16 N -0.59 -7.84 2.51 -174.19 -0.44 -8.27 16 17 C 0.10 1.22 5.00 -4.04 -0.02 1.20 16 18 C -0.10 -1.12 5.22 -26.73 -0.14 -1.26 16 19 C -0.14 -1.46 5.74 -90.62 -0.52 -1.98 16 20 C -0.19 -1.65 10.18 -26.73 -0.27 -1.93 16 21 C -0.18 -1.80 10.25 -26.73 -0.27 -2.08 16 22 C 0.14 1.58 5.70 -4.04 -0.02 1.55 16 23 C -0.17 -1.81 6.01 -90.62 -0.54 -2.35 16 24 C -0.17 -1.84 10.18 -26.70 -0.27 -2.11 16 25 C -0.18 -1.50 10.25 -26.70 -0.27 -1.78 16 26 C -0.21 -4.38 9.92 -26.69 -0.26 -4.64 16 27 C -0.14 -3.16 9.18 -26.70 -0.24 -3.41 16 28 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 29 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.05 0.99 8.05 -51.93 -0.42 0.57 16 31 H 0.41 8.51 7.44 -40.82 -0.30 8.21 16 32 H 0.07 0.69 8.00 -51.92 -0.42 0.27 16 33 H 0.12 1.62 5.60 -51.93 -0.29 1.33 16 34 H 0.07 1.07 6.56 -51.93 -0.34 0.73 16 35 H 0.05 0.59 7.87 -51.93 -0.41 0.18 16 36 H 0.11 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.09 0.75 8.03 -51.93 -0.42 0.33 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 42 H 0.09 1.08 7.01 -51.93 -0.36 0.71 16 43 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.10 1.12 8.03 -51.93 -0.42 0.70 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 49 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 50 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 51 H 0.09 2.12 8.14 -51.92 -0.42 1.69 16 LS Contribution 419.12 15.07 6.32 6.32 Total: -1.00 -27.84 419.12 -11.12 -38.97 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -8.83 Total: 12.48 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.67 Total: -8.76 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.06 Total: -45.16 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.15 Total: -19.61 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -27.84 -11.12 -38.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347618087.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.343 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds