Wall clock time and date at job start Tue Mar 31 2020 19:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00445 * 2 1 4 4 H 1.48489 * 109.47388 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46956 * 299.99890 * 3 2 1 6 6 H 1.48502 * 109.46883 * 59.99362 * 3 2 1 7 7 C 1.37875 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00035 * 175.10792 * 7 2 1 9 9 C 1.50693 * 120.00343 * 355.38326 * 7 2 1 10 10 C 1.53001 * 115.55167 * 275.03446 * 9 7 2 11 11 N 1.46504 * 109.47174 * 305.58201 * 10 9 7 12 12 C 1.34777 * 119.99824 * 184.84176 * 11 10 9 13 13 O 1.21345 * 120.00492 * 5.03324 * 12 11 10 14 14 C 1.49455 * 119.99761 * 185.04308 * 12 11 10 15 15 O 1.21348 * 119.99813 * 4.34601 * 14 12 11 16 16 N 1.34773 * 120.00190 * 184.34448 * 14 12 11 17 17 C 1.46506 * 119.99550 * 0.35530 * 16 14 12 18 18 C 1.52999 * 109.47148 * 79.95181 * 17 16 14 19 19 C 1.52999 * 109.46905 * 179.97438 * 18 17 16 20 20 C 1.53004 * 117.49820 * 243.62098 * 19 18 17 21 21 C 1.52995 * 60.00028 * 252.51030 * 20 19 18 22 22 C 1.46497 * 120.00202 * 180.35223 * 16 14 12 23 23 C 1.52998 * 109.47242 * 94.81993 * 22 16 14 24 24 C 1.52999 * 117.49981 * 243.74840 * 23 22 16 25 25 C 1.53000 * 117.50345 * 175.08876 * 23 22 16 26 26 C 1.53001 * 117.50144 * 129.36465 * 9 7 2 27 27 C 1.52997 * 117.50157 * 60.70436 * 9 7 2 28 28 H 0.97003 * 119.99515 * 5.00735 * 1 2 3 29 29 H 1.09005 * 109.47011 * 65.57791 * 10 9 7 30 30 H 1.09001 * 109.47643 * 185.58039 * 10 9 7 31 31 H 0.96996 * 120.00189 * 4.83129 * 11 10 9 32 32 H 1.09008 * 109.46826 * 199.95137 * 17 16 14 33 33 H 1.09000 * 109.46983 * 319.94785 * 17 16 14 34 34 H 1.08998 * 109.47208 * 299.99742 * 18 17 16 35 35 H 1.09000 * 109.47502 * 59.99922 * 18 17 16 36 36 H 1.09003 * 115.55301 * 29.32953 * 19 18 17 37 37 H 1.08998 * 117.49750 * 0.02562 * 20 19 18 38 38 H 1.08999 * 117.49821 * 145.02391 * 20 19 18 39 39 H 1.09005 * 117.50192 * 252.51286 * 21 20 19 40 40 H 1.09005 * 117.50175 * 107.48692 * 21 20 19 41 41 H 1.08999 * 109.47262 * 214.81770 * 22 16 14 42 42 H 1.09000 * 109.47366 * 334.81671 * 22 16 14 43 43 H 1.08999 * 115.54813 * 29.41236 * 23 22 16 44 44 H 1.09001 * 117.49760 * 0.02562 * 24 23 22 45 45 H 1.09005 * 117.49971 * 145.01357 * 24 23 22 46 46 H 1.08990 * 117.49986 * 214.98180 * 25 23 22 47 47 H 1.09003 * 117.49311 * 359.97438 * 25 23 22 48 48 H 1.09001 * 117.49710 * 359.97438 * 26 9 7 49 49 H 1.09003 * 117.49862 * 145.01899 * 26 9 7 50 50 H 1.08997 * 117.50168 * 214.98073 * 27 9 7 51 51 H 1.09007 * 117.49687 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0816 -1.1959 -0.0792 9 6 1.2546 -2.4970 0.1062 10 6 0.9173 -2.9509 1.5278 11 7 2.1426 -2.9960 2.3296 12 6 2.1044 -3.4640 3.5930 13 8 1.0762 -3.9323 4.0357 14 6 3.3283 -3.4058 4.4488 15 8 4.3332 -2.8665 4.0344 16 7 3.3158 -3.9523 5.6807 17 6 2.1049 -4.6102 6.1779 18 6 2.0135 -6.0205 5.5918 19 6 0.7492 -6.7078 6.1115 20 6 0.9291 -7.9533 6.9818 21 6 0.4138 -8.0900 5.5477 22 6 4.5130 -3.8885 6.5225 23 6 4.4186 -2.6774 7.4526 24 6 5.4614 -1.5712 7.2803 25 6 5.5237 -2.4997 8.4957 26 6 1.5741 -3.5816 -0.9246 27 6 0.2464 -2.8234 -0.9974 28 1 -0.4849 0.8369 -0.0733 29 1 0.2152 -2.2483 1.9766 30 1 0.4676 -3.9433 1.4954 31 1 2.9815 -2.6893 1.9513 32 1 2.1447 -4.6706 7.2655 33 1 1.2293 -4.0345 5.8778 34 1 1.9736 -5.9602 4.5042 35 1 2.8890 -6.5962 5.8919 36 1 -0.0834 -6.0448 6.3471 37 1 1.9481 -8.2828 7.1844 38 1 0.2149 -8.1099 7.7902 39 1 -0.6394 -8.3365 5.4126 40 1 1.0939 -8.5097 4.8064 41 1 4.5877 -4.7986 7.1176 42 1 5.3965 -3.7937 5.8912 43 1 3.4088 -2.3778 7.7332 44 1 6.2146 -1.7061 6.5040 45 1 5.1378 -0.5439 7.4479 46 1 5.2411 -2.0829 9.4623 47 1 6.3179 -3.2459 8.5195 48 1 2.3264 -3.3526 -1.6794 49 1 1.5438 -4.6185 -0.5899 50 1 -0.6569 -3.3617 -0.7107 51 1 0.1252 -2.0954 -1.7997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347618087.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:57 Heat of formation + Delta-G solvation = -5.629728 kcal Electronic energy + Delta-G solvation = -29597.199897 eV Core-core repulsion = 25691.761045 eV Total energy + Delta-G solvation = -3905.438852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.90172 -39.81896 -38.72277 -38.46173 -38.16810 -36.49349 -34.83472 -33.98341 -31.45586 -29.28606 -28.14674 -27.27821 -25.29354 -23.86861 -23.19961 -23.14928 -22.89951 -21.72915 -21.40851 -21.25938 -20.47729 -18.79120 -18.25863 -17.89282 -17.18267 -16.85744 -16.68341 -16.34328 -16.17439 -15.91571 -15.78550 -15.41398 -15.06227 -14.77566 -14.75214 -14.58175 -14.36554 -13.67618 -13.54054 -13.45730 -13.39662 -12.95862 -12.88507 -12.73073 -12.64675 -12.37428 -12.36355 -12.34887 -12.23643 -12.01376 -11.93906 -11.42230 -11.38515 -11.16497 -10.97880 -10.91161 -10.74092 -10.49147 -10.36122 -10.09793 -9.92294 -9.74465 -8.12204 -6.25453 0.42524 1.36781 1.37593 1.42803 1.51786 2.19942 2.39830 2.51005 2.91129 2.98097 3.15463 3.36353 3.57705 3.74642 3.84777 3.97034 4.03086 4.06159 4.11827 4.20926 4.22616 4.34498 4.44526 4.50784 4.52023 4.63292 4.64534 4.67360 4.70180 4.78778 4.81492 4.83983 4.93709 5.01944 5.02420 5.03043 5.09850 5.12194 5.24458 5.27444 5.27651 5.31763 5.38303 5.47446 5.49252 5.57223 5.68983 5.76175 5.98360 6.34777 6.41090 6.77846 6.82251 7.06459 7.44478 8.94476 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.003757 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.116448 B = 7451.928084 C = 9824.499203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.032 3.968 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.287 1.287 7 C -0.506 4.506 8 H 0.056 0.944 9 C -0.002 4.002 10 C 0.178 3.822 11 N -0.672 5.672 12 C 0.492 3.508 13 O -0.533 6.533 14 C 0.506 3.494 15 O -0.544 6.544 16 N -0.574 5.574 17 C 0.104 3.896 18 C -0.087 4.087 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.191 4.191 22 C 0.141 3.859 23 C -0.182 4.182 24 C -0.195 4.195 25 C -0.145 4.145 26 C -0.183 4.183 27 C -0.145 4.145 28 H 0.260 0.740 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.412 0.588 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.075 0.925 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.273 -12.925 17.694 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.170 4.170 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.214 1.214 7 C -0.544 4.544 8 H 0.074 0.926 9 C -0.003 4.003 10 C 0.055 3.945 11 N -0.321 5.321 12 C 0.272 3.728 13 O -0.413 6.413 14 C 0.289 3.711 15 O -0.422 6.422 16 N -0.305 5.305 17 C -0.018 4.018 18 C -0.126 4.126 19 C -0.171 4.171 20 C -0.201 4.201 21 C -0.228 4.228 22 C 0.020 3.980 23 C -0.201 4.201 24 C -0.232 4.232 25 C -0.183 4.183 26 C -0.220 4.220 27 C -0.183 4.183 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.248 0.752 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.095 0.905 43 H 0.119 0.881 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.099 0.901 49 H 0.108 0.892 50 H 0.094 0.906 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.914 -12.828 17.843 22.757 hybrid contribution 0.296 1.575 -0.780 1.783 sum 6.210 -11.253 17.062 21.362 Atomic orbital electron populations 1.70088 1.06883 1.27224 1.49669 1.25582 0.95470 1.01612 0.94290 0.85755 0.79456 0.80641 0.77340 1.19198 1.20544 1.21359 1.20637 0.92730 0.89778 1.51236 0.92561 1.19080 1.00518 0.93889 0.86804 1.20745 0.84483 0.98167 0.91127 1.45830 1.13722 1.60488 1.12108 1.20290 0.89217 0.79952 0.83301 1.90634 1.33217 1.45420 1.72002 1.20206 0.87758 0.79600 0.83552 1.90728 1.34217 1.43896 1.73333 1.47880 1.15588 1.53689 1.13359 1.22152 0.86414 0.93361 0.99837 1.21361 0.96486 0.95028 0.99701 1.22078 0.99354 0.90630 1.05033 1.23114 1.02999 1.00449 0.93505 1.22987 1.02077 1.00071 0.97654 1.21346 0.86543 0.98409 0.91710 1.22694 0.96244 0.98632 1.02509 1.23051 1.02330 0.96033 1.01749 1.23033 0.99719 1.01959 0.93543 1.23051 0.99176 0.96030 1.03771 1.22375 0.92014 1.01527 1.02427 0.93097 0.94339 0.92499 0.75184 0.87728 0.89078 0.93828 0.91087 0.88150 0.87992 0.87808 0.88682 0.89358 0.86626 0.90475 0.88064 0.89505 0.89459 0.87342 0.87064 0.90090 0.89226 0.90636 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.36 12.65 21.45 0.27 -50.09 16 2 C 0.03 1.70 5.43 84.65 0.46 2.16 16 3 Si 0.94 43.31 29.54 68.60 2.03 45.33 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.51 -26.43 8.07 25.60 0.21 -26.22 16 8 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 9 C 0.00 -0.10 1.62 -52.93 -0.09 -0.19 16 10 C 0.18 7.94 5.60 86.38 0.48 8.42 16 11 N -0.67 -27.64 5.40 -464.39 -2.51 -30.14 16 12 C 0.49 18.55 7.35 87.27 0.64 19.19 16 13 O -0.53 -20.31 11.74 -3.23 -0.04 -20.35 16 14 C 0.51 17.17 7.64 87.27 0.67 17.84 16 15 O -0.54 -20.92 16.00 -3.24 -0.05 -20.97 16 16 N -0.57 -14.60 2.51 -823.38 -2.06 -16.66 16 17 C 0.10 2.30 5.00 86.38 0.43 2.74 16 18 C -0.09 -1.91 5.22 30.59 0.16 -1.75 16 19 C -0.15 -2.99 5.74 -10.79 -0.06 -3.06 16 20 C -0.16 -2.43 10.18 30.59 0.31 -2.11 16 21 C -0.19 -3.53 10.25 30.59 0.31 -3.22 16 22 C 0.14 2.80 5.70 86.38 0.49 3.29 16 23 C -0.18 -3.47 6.01 -10.79 -0.06 -3.53 16 24 C -0.19 -3.99 10.18 30.62 0.31 -3.68 16 25 C -0.15 -2.04 10.25 30.62 0.31 -1.72 16 26 C -0.18 -7.45 9.92 30.62 0.30 -7.14 16 27 C -0.15 -6.56 9.18 30.62 0.28 -6.28 16 28 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 29 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 31 H 0.41 17.34 7.44 -92.71 -0.69 16.65 16 32 H 0.10 1.68 8.00 -2.38 -0.02 1.66 16 33 H 0.09 2.53 5.60 -2.39 -0.01 2.52 16 34 H 0.04 1.23 6.56 -2.39 -0.02 1.21 16 35 H 0.07 1.32 7.87 -2.39 -0.02 1.30 16 36 H 0.10 2.11 8.07 -2.39 -0.02 2.09 16 37 H 0.10 1.30 8.03 -2.39 -0.02 1.28 16 38 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.12 1.53 8.11 -2.39 -0.02 1.51 16 42 H 0.08 1.77 7.01 -2.39 -0.02 1.75 16 43 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.09 1.97 8.03 -2.39 -0.02 1.95 16 45 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 49 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 50 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 51 H 0.06 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -61.05 419.12 3.03 -58.02 By element: Atomic # 1 Polarization: 39.91 SS G_CDS: 0.22 Total: 40.13 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 5.16 Total: -5.27 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -4.30 Total: -96.90 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.09 Total: -41.32 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -61.05 3.03 -58.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347618087.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.393 kcal (2) G-P(sol) polarization free energy of solvation -61.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds