Wall clock time and date at job start Tue Mar 31 2020 18:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46829 * 2 1 4 4 C 1.50700 * 109.47119 * 120.00099 * 2 1 3 5 5 N 1.30296 * 126.35008 * 299.68788 * 4 2 1 6 6 N 1.28522 * 110.05607 * 179.82688 * 5 4 2 7 7 C 1.31215 * 109.86112 * 0.45320 * 6 5 4 8 8 N 1.38575 * 126.47862 * 179.70077 * 7 6 5 9 9 C 1.46900 * 110.99765 * 296.56124 * 8 7 6 10 10 C 1.46908 * 111.00374 * 60.50997 * 8 7 6 11 11 H 1.08994 * 109.46938 * 300.00796 * 10 8 7 12 12 C 1.53000 * 109.46410 * 60.00284 * 10 8 7 13 13 C 1.50691 * 109.47295 * 180.02562 * 10 8 7 14 14 H 1.08005 * 120.00304 * 0.02562 * 13 10 8 15 15 C 1.37882 * 119.99996 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99601 * 0.02562 * 15 13 10 17 17 Si 1.86793 * 120.00035 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47471 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47417 * 120.00230 * 17 15 13 20 20 H 1.48506 * 109.47335 * 240.00221 * 17 15 13 21 21 N 1.36453 * 107.05128 * 359.72906 * 7 6 5 22 22 C 1.46502 * 127.13597 * 180.02562 * 21 7 6 23 23 C 1.50701 * 109.47215 * 267.32701 * 22 21 7 24 24 N 1.33315 * 126.54648 * 265.03315 * 23 22 21 25 25 N 1.29004 * 107.35187 * 179.83723 * 24 23 22 26 26 N 1.28788 * 108.72084 * 0.43341 * 25 24 23 27 27 C 1.46499 * 125.44447 * 179.72378 * 26 25 24 28 28 N 1.28878 * 109.10223 * 359.72944 * 26 25 24 29 29 H 1.09005 * 109.47155 * 299.99320 * 1 2 3 30 30 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47346 * 59.99699 * 1 2 3 32 32 H 1.08994 * 109.47435 * 239.99989 * 2 1 3 33 33 H 1.09003 * 109.47215 * 60.00385 * 3 2 1 34 34 H 1.08999 * 109.46893 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47402 * 300.00266 * 3 2 1 36 36 H 1.09001 * 109.47161 * 65.73600 * 9 8 7 37 37 H 1.08994 * 109.47596 * 185.73227 * 9 8 7 38 38 H 1.09000 * 109.47144 * 305.73397 * 9 8 7 39 39 H 1.09003 * 109.47252 * 60.00665 * 12 10 8 40 40 H 1.09003 * 109.46922 * 179.97438 * 12 10 8 41 41 H 1.08997 * 109.47638 * 299.99898 * 12 10 8 42 42 H 0.96998 * 119.99532 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.47080 * 27.32757 * 22 21 7 44 44 H 1.09002 * 109.47337 * 147.32359 * 22 21 7 45 45 H 1.09000 * 109.47403 * 270.00480 * 27 26 25 46 46 H 1.09007 * 109.47343 * 30.00227 * 27 26 25 47 47 H 1.08994 * 109.47216 * 149.99892 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7997 -0.3716 2.4669 6 7 2.3763 -1.1968 3.2659 7 6 3.0210 -2.1083 2.5765 8 7 3.7642 -3.1582 3.0917 9 6 4.9164 -2.6623 3.8561 10 6 2.9274 -4.0418 3.9147 11 1 2.5043 -3.4735 4.7430 12 6 1.7960 -4.6150 3.0590 13 6 3.7684 -5.1686 4.4568 14 1 4.8195 -5.2228 4.2147 15 6 3.1959 -6.1303 5.2621 16 7 1.9158 -6.0645 5.5565 17 14 4.2385 -7.5267 5.9347 18 1 5.6373 -7.3730 5.4604 19 1 4.2131 -7.4929 7.4190 20 1 3.6940 -8.8242 5.4598 21 7 2.8217 -1.8266 1.2563 22 6 3.3446 -2.5669 0.1053 23 6 4.6530 -1.9592 -0.3305 24 7 4.8249 -1.0469 -1.2873 25 7 6.0871 -0.7876 -1.3493 26 7 6.7007 -1.5091 -0.4767 27 6 8.1464 -1.5094 -0.2395 28 7 5.8395 -2.2309 0.1545 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 4.5642 -2.1296 4.7395 37 1 5.5382 -3.5032 4.1629 38 1 5.5017 -1.9859 3.2333 39 1 2.2192 -5.1834 2.2306 40 1 1.1754 -5.2710 3.6695 41 1 1.1878 -3.7998 2.6672 42 1 1.5132 -6.7409 6.1233 43 1 3.5030 -3.6085 0.3847 44 1 2.6290 -2.5157 -0.7153 45 1 8.6192 -2.2556 -0.8781 46 1 8.5526 -0.5243 -0.4698 47 1 8.3431 -1.7482 0.8055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001454745722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:03 Heat of formation + Delta-G solvation = 222.743332 kcal Electronic energy + Delta-G solvation = -30510.403126 eV Core-core repulsion = 26575.912432 eV Total energy + Delta-G solvation = -3934.490694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.192 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.51342 -42.52906 -37.12431 -36.03047 -35.27124 -34.63651 -33.00145 -32.78381 -29.49777 -29.39708 -28.61493 -27.39923 -27.11879 -25.52678 -24.34584 -23.41233 -23.26909 -22.65770 -21.53704 -19.94564 -19.11492 -17.79376 -17.74531 -16.80657 -16.39352 -16.15654 -15.31795 -14.96669 -14.85197 -14.41768 -14.19381 -14.08371 -13.77812 -13.71091 -13.43997 -13.18291 -12.91591 -12.84195 -12.34627 -12.11633 -12.06918 -11.90765 -11.61203 -11.20638 -11.16574 -11.14957 -11.13735 -11.08176 -10.97625 -10.94690 -10.77598 -10.38254 -10.32037 -10.26878 -10.10802 -9.99071 -9.94041 -9.07314 -8.52774 -8.37673 -7.69423 -6.07674 -4.13865 1.04473 1.67583 1.78859 2.18693 2.81293 3.26154 3.34054 3.35898 3.38025 3.65142 3.97771 4.32448 4.45410 4.49503 4.54662 4.64412 4.84424 4.85677 4.99126 5.13792 5.18884 5.25077 5.34198 5.45087 5.58685 5.67062 5.70488 5.77365 5.88378 5.89040 5.92671 6.01080 6.11729 6.27235 6.34962 6.39541 6.45801 6.62259 6.74806 6.89219 6.94816 7.12332 7.39867 7.65499 7.74880 7.92359 8.16606 8.18519 8.46330 8.90187 9.26800 9.50917 10.99345 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.004468 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.345813 B = 6265.156582 C = 8087.009636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.000 4.000 3 C -0.135 4.135 4 C 0.172 3.828 5 N -0.285 5.285 6 N -0.319 5.319 7 C 0.390 3.610 8 N -0.469 5.469 9 C 0.058 3.942 10 C 0.224 3.776 11 H 0.021 0.979 12 C -0.131 4.131 13 C -0.509 4.509 14 H 0.067 0.933 15 C 0.062 3.938 16 N -0.888 5.888 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.472 5.472 22 C 0.216 3.784 23 C 0.146 3.854 24 N -0.270 5.270 25 N -0.066 5.066 26 N -0.141 5.141 27 C 0.094 3.906 28 N -0.267 5.267 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.032 0.968 40 H 0.092 0.908 41 H 0.002 0.998 42 H 0.262 0.738 43 H 0.135 0.865 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.730 9.301 -15.375 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 C -0.193 4.193 4 C -0.095 4.095 5 N -0.124 5.124 6 N -0.161 5.161 7 C 0.035 3.965 8 N -0.196 5.196 9 C -0.089 4.089 10 C 0.120 3.880 11 H 0.038 0.962 12 C -0.189 4.189 13 C -0.547 4.547 14 H 0.085 0.915 15 C -0.140 4.140 16 N -0.526 5.526 17 Si 0.728 3.272 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.167 5.167 22 C 0.089 3.911 23 C -0.137 4.137 24 N -0.142 5.142 25 N -0.060 5.060 26 N -0.053 5.053 27 C -0.045 4.045 28 N -0.118 5.118 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.110 0.890 41 H 0.021 0.979 42 H 0.072 0.928 43 H 0.153 0.847 44 H 0.138 0.862 45 H 0.121 0.879 46 H 0.130 0.870 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.711 10.051 -14.760 19.451 hybrid contribution 0.645 -1.543 0.189 1.683 sum 8.356 8.508 -14.571 18.829 Atomic orbital electron populations 1.21805 0.92955 1.02414 1.02694 1.19497 0.96436 0.95609 0.90607 1.21723 1.00917 0.94167 1.02471 1.24674 0.97953 0.89032 0.97854 1.73910 1.19685 1.21273 0.97572 1.74732 1.12517 1.03869 1.25006 1.22862 0.97498 0.95158 0.81004 1.59219 1.08968 1.11074 1.40348 1.22107 0.91746 0.99825 0.95260 1.19436 0.89867 0.89613 0.89073 0.96159 1.21815 0.98670 0.99069 0.99355 1.21080 0.95800 1.08294 1.29539 0.91501 1.24911 0.95037 0.97957 0.96077 1.69910 1.10651 1.35122 1.36924 0.86416 0.80363 0.81826 0.78630 1.19708 1.21038 1.21023 1.46284 1.39701 1.23835 1.06928 1.19729 0.86861 0.96610 0.87891 1.25598 0.95150 0.97949 0.95028 1.75808 1.06479 1.14000 1.17930 1.78938 1.00382 1.15334 1.11318 1.50134 1.10951 1.23271 1.20967 1.22461 0.69834 1.06226 1.06023 1.74910 0.99368 1.17497 1.20039 0.91331 0.92519 0.91749 0.89630 0.91572 0.93048 0.91735 0.94909 0.89308 0.94213 0.94890 0.88954 0.97886 0.92816 0.84737 0.86186 0.87885 0.87039 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.17 37.16 0.34 -1.25 16 2 C 0.00 -0.01 3.29 -91.77 -0.30 -0.31 16 3 C -0.13 -1.60 9.18 37.16 0.34 -1.25 16 4 C 0.17 2.95 6.58 -154.02 -1.01 1.94 16 5 N -0.29 -5.90 12.18 32.99 0.40 -5.50 16 6 N -0.32 -7.35 12.15 30.31 0.37 -6.98 16 7 C 0.39 8.21 5.02 -318.89 -1.60 6.61 16 8 N -0.47 -10.19 4.66 -176.09 -0.82 -11.01 16 9 C 0.06 1.18 9.14 60.06 0.55 1.73 16 10 C 0.22 5.67 2.00 -68.86 -0.14 5.53 16 11 H 0.02 0.60 8.10 -51.93 -0.42 0.18 16 12 C -0.13 -3.21 8.84 37.16 0.33 -2.88 16 13 C -0.51 -13.35 7.95 -34.44 -0.27 -13.62 16 14 H 0.07 1.71 6.39 -52.48 -0.34 1.38 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 17 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 N -0.47 -8.26 2.79 -115.37 -0.32 -8.58 16 22 C 0.22 3.06 6.46 -5.19 -0.03 3.02 16 23 C 0.15 2.10 7.95 -156.63 -1.25 0.85 16 24 N -0.27 -3.78 12.50 32.44 0.41 -3.37 16 25 N -0.07 -0.85 13.25 60.35 0.80 -0.05 16 26 N -0.14 -1.61 4.40 -16.69 -0.07 -1.68 16 27 C 0.09 0.52 11.63 59.85 0.70 1.21 16 28 N -0.27 -3.80 12.13 32.46 0.39 -3.40 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.97 7.01 -51.93 -0.36 0.61 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.77 6.30 -51.93 -0.33 1.44 16 38 H 0.04 0.73 8.11 -51.93 -0.42 0.31 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 41 H 0.00 0.05 7.22 -51.93 -0.38 -0.32 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.13 1.96 8.14 -51.93 -0.42 1.54 16 44 H 0.12 1.30 7.35 -51.93 -0.38 0.92 16 45 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.11 0.36 8.14 -51.92 -0.42 -0.07 16 47 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -34.12 391.31 -6.94 -41.06 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.15 Total: -0.82 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.45 Total: 3.14 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: 1.78 Total: -64.88 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.12 -6.94 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454745722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 263.800 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 229.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 222.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds