Wall clock time and date at job start Tue Mar 31 2020 18:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46829 * 2 1 4 4 C 1.50700 * 109.47119 * 120.00099 * 2 1 3 5 5 N 1.30296 * 126.35008 * 299.68788 * 4 2 1 6 6 N 1.28522 * 110.05607 * 179.82688 * 5 4 2 7 7 C 1.31215 * 109.86112 * 0.45320 * 6 5 4 8 8 N 1.38575 * 126.47862 * 179.70077 * 7 6 5 9 9 C 1.46900 * 110.99765 * 296.56124 * 8 7 6 10 10 C 1.46908 * 111.00374 * 60.50997 * 8 7 6 11 11 H 1.08994 * 109.46938 * 300.00796 * 10 8 7 12 12 C 1.53000 * 109.46410 * 60.00284 * 10 8 7 13 13 C 1.50691 * 109.47295 * 180.02562 * 10 8 7 14 14 H 1.08005 * 120.00304 * 0.02562 * 13 10 8 15 15 C 1.37882 * 119.99996 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99601 * 0.02562 * 15 13 10 17 17 Si 1.86793 * 120.00035 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47471 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47417 * 120.00230 * 17 15 13 20 20 H 1.48506 * 109.47335 * 240.00221 * 17 15 13 21 21 N 1.36453 * 107.05128 * 359.72906 * 7 6 5 22 22 C 1.46502 * 127.13597 * 180.02562 * 21 7 6 23 23 C 1.50701 * 109.47215 * 267.32701 * 22 21 7 24 24 N 1.33315 * 126.54648 * 265.03315 * 23 22 21 25 25 N 1.29004 * 107.35187 * 179.83723 * 24 23 22 26 26 N 1.28788 * 108.72084 * 0.43341 * 25 24 23 27 27 C 1.46499 * 125.44447 * 179.72378 * 26 25 24 28 28 N 1.28878 * 109.10223 * 359.72944 * 26 25 24 29 29 H 1.09005 * 109.47155 * 299.99320 * 1 2 3 30 30 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47346 * 59.99699 * 1 2 3 32 32 H 1.08994 * 109.47435 * 239.99989 * 2 1 3 33 33 H 1.09003 * 109.47215 * 60.00385 * 3 2 1 34 34 H 1.08999 * 109.46893 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47402 * 300.00266 * 3 2 1 36 36 H 1.09001 * 109.47161 * 65.73600 * 9 8 7 37 37 H 1.08994 * 109.47596 * 185.73227 * 9 8 7 38 38 H 1.09000 * 109.47144 * 305.73397 * 9 8 7 39 39 H 1.09003 * 109.47252 * 60.00665 * 12 10 8 40 40 H 1.09003 * 109.46922 * 179.97438 * 12 10 8 41 41 H 1.08997 * 109.47638 * 299.99898 * 12 10 8 42 42 H 0.96998 * 119.99532 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.47080 * 27.32757 * 22 21 7 44 44 H 1.09002 * 109.47337 * 147.32359 * 22 21 7 45 45 H 1.09000 * 109.47403 * 270.00480 * 27 26 25 46 46 H 1.09007 * 109.47343 * 30.00227 * 27 26 25 47 47 H 1.08994 * 109.47216 * 149.99892 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7997 -0.3716 2.4669 6 7 2.3763 -1.1968 3.2659 7 6 3.0210 -2.1083 2.5765 8 7 3.7642 -3.1582 3.0917 9 6 4.9164 -2.6623 3.8561 10 6 2.9274 -4.0418 3.9147 11 1 2.5043 -3.4735 4.7430 12 6 1.7960 -4.6150 3.0590 13 6 3.7684 -5.1686 4.4568 14 1 4.8195 -5.2228 4.2147 15 6 3.1959 -6.1303 5.2621 16 7 1.9158 -6.0645 5.5565 17 14 4.2385 -7.5267 5.9347 18 1 5.6373 -7.3730 5.4604 19 1 4.2131 -7.4929 7.4190 20 1 3.6940 -8.8242 5.4598 21 7 2.8217 -1.8266 1.2563 22 6 3.3446 -2.5669 0.1053 23 6 4.6530 -1.9592 -0.3305 24 7 4.8249 -1.0469 -1.2873 25 7 6.0871 -0.7876 -1.3493 26 7 6.7007 -1.5091 -0.4767 27 6 8.1464 -1.5094 -0.2395 28 7 5.8395 -2.2309 0.1545 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 4.5642 -2.1296 4.7395 37 1 5.5382 -3.5032 4.1629 38 1 5.5017 -1.9859 3.2333 39 1 2.2192 -5.1834 2.2306 40 1 1.1754 -5.2710 3.6695 41 1 1.1878 -3.7998 2.6672 42 1 1.5132 -6.7409 6.1233 43 1 3.5030 -3.6085 0.3847 44 1 2.6290 -2.5157 -0.7153 45 1 8.6192 -2.2556 -0.8781 46 1 8.5526 -0.5243 -0.4698 47 1 8.3431 -1.7482 0.8055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454745722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:02 Heat of formation + Delta-G solvation = 200.608219 kcal Electronic energy + Delta-G solvation = -30511.362976 eV Core-core repulsion = 26575.912432 eV Total energy + Delta-G solvation = -3935.450545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.192 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.48093 -44.02646 -38.87394 -37.17039 -36.35416 -35.71570 -34.79424 -34.02035 -31.39873 -30.33457 -30.16895 -28.41455 -28.04382 -27.45983 -26.13855 -24.55297 -24.34130 -23.76165 -23.21676 -21.39913 -20.56487 -18.85440 -18.67372 -18.37960 -17.93467 -17.60869 -16.90776 -16.54755 -16.21198 -15.78634 -15.42372 -15.20434 -15.07030 -14.96966 -14.35794 -14.20788 -14.13669 -13.98743 -13.84133 -13.64690 -13.05697 -13.04139 -13.00333 -12.93665 -12.74441 -12.63084 -12.43424 -12.24283 -12.22008 -12.15991 -12.15165 -12.07262 -12.02661 -11.98790 -11.50173 -11.41424 -11.27059 -11.05155 -10.56920 -9.94436 -9.53684 -8.12623 -6.26295 0.09021 0.55400 0.74478 1.07841 1.45694 1.46378 1.51948 1.59480 1.81359 2.43121 2.64383 2.96946 3.05713 3.19366 3.28254 3.65431 3.85668 4.02028 4.10205 4.16191 4.19669 4.22633 4.33914 4.39955 4.40816 4.51040 4.60161 4.64478 4.71867 4.75131 4.82790 4.84014 4.87909 4.94440 4.96293 4.98163 5.06395 5.09287 5.11665 5.32913 5.38193 5.41301 5.57805 5.65866 5.85524 5.97594 6.16326 6.61067 6.84310 7.18542 7.42748 7.73457 8.94770 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.004468 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.345813 B = 6265.156582 C = 8087.009636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 C -0.128 4.128 4 C 0.194 3.806 5 N -0.322 5.322 6 N -0.362 5.362 7 C 0.374 3.626 8 N -0.458 5.458 9 C 0.066 3.934 10 C 0.235 3.765 11 H -0.031 1.031 12 C -0.112 4.112 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.014 3.986 16 N -0.921 5.921 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.286 1.286 20 H -0.281 1.281 21 N -0.467 5.467 22 C 0.211 3.789 23 C 0.137 3.863 24 N -0.280 5.280 25 N -0.072 5.072 26 N -0.127 5.127 27 C 0.077 3.923 28 N -0.290 5.290 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.012 0.988 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.001 0.999 42 H 0.263 0.737 43 H 0.129 0.871 44 H 0.155 0.845 45 H 0.129 0.871 46 H 0.136 0.864 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.273 9.269 -17.902 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 C -0.186 4.186 4 C -0.074 4.074 5 N -0.160 5.160 6 N -0.204 5.204 7 C 0.017 3.983 8 N -0.184 5.184 9 C -0.081 4.081 10 C 0.129 3.871 11 H -0.013 1.013 12 C -0.170 4.170 13 C -0.556 4.556 14 H 0.092 0.908 15 C -0.185 4.185 16 N -0.560 5.560 17 Si 0.793 3.207 18 H -0.183 1.183 19 H -0.212 1.212 20 H -0.206 1.206 21 N -0.161 5.161 22 C 0.086 3.914 23 C -0.146 4.146 24 N -0.151 5.151 25 N -0.065 5.065 26 N -0.041 5.041 27 C -0.060 4.060 28 N -0.142 5.142 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.117 0.883 36 H 0.030 0.970 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.020 0.980 42 H 0.072 0.928 43 H 0.147 0.853 44 H 0.173 0.827 45 H 0.147 0.853 46 H 0.154 0.846 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.281 10.040 -17.324 22.070 hybrid contribution 0.234 -1.422 0.903 1.701 sum 9.515 8.618 -16.421 20.843 Atomic orbital electron populations 1.21798 0.91576 1.02447 1.03609 1.19843 0.97438 0.95847 0.89081 1.21688 0.99902 0.93577 1.03466 1.25617 0.95541 0.87997 0.98277 1.73831 1.21233 1.21972 0.98983 1.74613 1.13707 1.05064 1.26996 1.22718 0.98169 0.95069 0.82334 1.59155 1.08572 1.11370 1.39339 1.22055 0.91394 0.99945 0.94747 1.19114 0.90325 0.89480 0.88176 1.01293 1.21566 0.98061 0.98453 0.98968 1.21327 0.96147 1.08426 1.29653 0.90826 1.25752 0.96071 1.00436 0.96285 1.70059 1.12382 1.36038 1.37565 0.85356 0.79258 0.78523 0.77577 1.18317 1.21186 1.20642 1.46392 1.39244 1.23907 1.06549 1.20022 0.88014 0.95833 0.87544 1.25496 0.95143 0.98485 0.95521 1.75759 1.07144 1.14111 1.18115 1.78868 1.00211 1.15621 1.11785 1.50617 1.12287 1.21652 1.19570 1.23061 0.67000 1.08697 1.07250 1.74867 0.99903 1.18550 1.20905 0.93058 0.92955 0.88189 0.87369 0.92971 0.94510 0.88348 0.96959 0.88997 0.92383 0.93629 0.91482 0.98005 0.92828 0.85282 0.82704 0.85314 0.84559 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.17 71.98 0.66 -2.11 16 2 C 0.00 -0.03 3.29 -11.54 -0.04 -0.07 16 3 C -0.13 -2.77 9.18 71.98 0.66 -2.11 16 4 C 0.19 6.55 6.58 137.64 0.91 7.46 16 5 N -0.32 -13.62 12.18 -49.54 -0.60 -14.22 16 6 N -0.36 -17.32 12.15 -58.01 -0.70 -18.02 16 7 C 0.37 16.05 5.02 260.12 1.31 17.36 16 8 N -0.46 -20.27 4.66 -711.02 -3.31 -23.58 16 9 C 0.07 2.72 9.14 127.69 1.17 3.88 16 10 C 0.23 12.24 2.00 44.16 0.09 12.33 16 11 H -0.03 -1.89 8.10 -2.39 -0.02 -1.91 16 12 C -0.11 -5.65 8.84 71.98 0.64 -5.01 16 13 C -0.52 -27.44 7.95 25.60 0.20 -27.23 16 14 H 0.07 3.74 6.39 -2.91 -0.02 3.72 16 15 C 0.01 0.74 5.30 84.66 0.45 1.19 16 16 N -0.92 -52.99 11.32 21.45 0.24 -52.75 16 17 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 N -0.47 -16.11 2.79 -518.91 -1.45 -17.56 16 22 C 0.21 5.66 6.46 85.63 0.55 6.21 16 23 C 0.14 3.70 7.95 138.55 1.10 4.80 16 24 N -0.28 -7.25 12.50 -51.27 -0.64 -7.89 16 25 N -0.07 -1.70 13.25 37.02 0.49 -1.20 16 26 N -0.13 -2.63 4.40 -206.73 -0.91 -3.54 16 27 C 0.08 0.63 11.63 127.77 1.49 2.12 16 28 N -0.29 -7.78 12.13 -51.21 -0.62 -8.40 16 29 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.11 2.08 7.01 -2.39 -0.02 2.06 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 3.67 6.30 -2.39 -0.02 3.65 16 38 H 0.06 2.14 8.11 -2.39 -0.02 2.12 16 39 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 41 H 0.00 0.05 7.22 -2.39 -0.02 0.03 16 42 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.13 3.62 8.14 -2.39 -0.02 3.60 16 44 H 0.16 2.95 7.35 -2.39 -0.02 2.93 16 45 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.14 0.45 8.14 -2.38 -0.02 0.43 16 47 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -76.84 391.31 4.68 -72.16 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.98 Total: 11.94 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 9.18 Total: 18.80 kcal Atomic # 7 Polarization: -139.66 SS G_CDS: -7.51 Total: -147.17 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -76.84 4.68 -72.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454745722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.766 kcal (2) G-P(sol) polarization free energy of solvation -76.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds