Wall clock time and date at job start Tue Mar 31 2020 17:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47116 * 2 1 4 4 C 1.53000 * 109.47195 * 119.99963 * 2 1 3 5 5 N 1.46504 * 109.47317 * 174.99814 * 4 2 1 6 6 C 1.36932 * 120.00012 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00121 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00145 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99475 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00408 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47016 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46938 * 119.99659 * 10 8 6 13 13 H 1.48492 * 109.47376 * 240.00108 * 10 8 6 14 14 N 1.46500 * 109.47014 * 239.99963 * 2 1 3 15 15 C 1.46506 * 119.99712 * 299.99819 * 14 2 1 16 16 C 1.34767 * 120.00143 * 120.00123 * 14 2 1 17 17 O 1.21288 * 119.99928 * 5.37200 * 16 14 2 18 18 C 1.50698 * 120.00204 * 185.37351 * 16 14 2 19 19 C 1.50702 * 112.85049 * 66.67539 * 18 16 14 20 20 C 1.38242 * 119.97212 * 233.60750 * 19 18 16 21 21 C 1.38202 * 120.02121 * 179.76482 * 20 19 18 22 22 C 1.38457 * 119.97436 * 0.50710 * 21 20 19 23 23 F 1.35101 * 120.02579 * 179.77015 * 22 21 20 24 24 C 1.38454 * 119.95205 * 359.74734 * 22 21 20 25 25 C 1.38199 * 119.97328 * 359.97438 * 24 22 21 26 26 C 1.53780 * 113.61628 * 295.47910 * 18 16 14 27 27 C 1.53783 * 87.08093 * 270.88240 * 26 18 16 28 28 C 1.53780 * 87.17179 * 334.52464 * 27 26 18 29 29 H 1.09002 * 109.46643 * 299.99823 * 1 2 3 30 30 H 1.08999 * 109.46978 * 59.99591 * 1 2 3 31 31 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47285 * 294.99978 * 4 2 1 33 33 H 1.09002 * 109.47130 * 54.99828 * 4 2 1 34 34 H 0.96997 * 119.99578 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99473 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.46964 * 264.81478 * 15 14 2 37 37 H 1.08998 * 109.47118 * 24.82362 * 15 14 2 38 38 H 1.09003 * 109.46356 * 144.82010 * 15 14 2 39 39 H 1.07998 * 119.98981 * 0.02562 * 20 19 18 40 40 H 1.08002 * 120.01292 * 180.25426 * 21 20 19 41 41 H 1.08000 * 120.01473 * 180.02562 * 24 22 21 42 42 H 1.08003 * 119.98801 * 180.02562 * 25 24 22 43 43 H 1.09001 * 113.61511 * 156.33789 * 26 18 16 44 44 H 1.08994 * 113.68747 * 25.44021 * 26 18 16 45 45 H 1.09002 * 113.61354 * 89.11502 * 27 26 18 46 46 H 1.08997 * 113.61620 * 219.93508 * 27 26 18 47 47 H 1.08998 * 113.61527 * 140.02424 * 28 27 26 48 48 H 1.09001 * 113.61796 * 270.92279 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1838 -1.4389 2.2067 7 1 3.6468 -1.8440 3.0516 8 6 5.5673 -1.5381 2.1514 9 7 6.2218 -1.0438 1.1219 10 14 6.5001 -2.3729 3.5378 11 1 5.5396 -2.8404 4.5694 12 1 7.2518 -3.5349 2.9993 13 1 7.4502 -1.4077 4.1467 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0933 -1.4279 16 6 2.7932 -0.0357 -2.0833 17 8 3.1667 1.0933 -1.8448 18 6 3.1954 -0.7061 -3.3716 19 6 2.0283 -0.9512 -4.2930 20 6 1.7920 -2.2211 -4.7856 21 6 0.7192 -2.4479 -5.6267 22 6 -0.1129 -1.4007 -5.9844 23 9 -1.1593 -1.6204 -6.8103 24 6 0.1278 -0.1282 -5.4947 25 6 1.1978 0.0952 -4.6491 26 6 4.0911 -1.9398 -3.1706 27 6 5.2916 -0.9807 -3.2328 28 6 4.4009 -0.0414 -4.0630 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9825 -0.4622 0.4319 35 1 7.1886 -1.1128 1.0834 36 1 2.4610 -2.7357 -1.0528 37 1 0.7353 -2.3244 -0.9069 38 1 1.5336 -2.2631 -2.4967 39 1 2.4435 -3.0370 -4.5096 40 1 0.5323 -3.4409 -6.0082 41 1 -0.5209 0.6893 -5.7727 42 1 1.3856 1.0876 -4.2666 43 1 4.0535 -2.6465 -3.9997 44 1 3.9650 -2.4190 -2.1998 45 1 5.5738 -0.5709 -2.2630 46 1 6.1411 -1.3798 -3.7871 47 1 4.5239 1.0121 -3.8117 48 1 4.4478 -0.2299 -5.1355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482318122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:06 Heat of formation + Delta-G solvation = -12.669366 kcal Electronic energy + Delta-G solvation = -30524.267038 eV Core-core repulsion = 26495.062619 eV Total energy + Delta-G solvation = -4029.204419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.05880 -41.14854 -38.83521 -37.42155 -36.04609 -33.97281 -31.94064 -31.39548 -30.83331 -30.01306 -26.80013 -26.00309 -25.59395 -25.46046 -23.18545 -22.69819 -22.13082 -21.39267 -19.52456 -18.31439 -17.96631 -17.05755 -16.98958 -16.35164 -16.13475 -15.76712 -15.56669 -15.01568 -14.82056 -14.42803 -14.25404 -13.80221 -13.68292 -13.48927 -13.41514 -13.18726 -12.94537 -12.62644 -12.47955 -12.41850 -12.25247 -12.08887 -11.83062 -11.80688 -11.65912 -11.44996 -11.19259 -10.85403 -10.76619 -10.59739 -10.45735 -10.31877 -10.10652 -9.99767 -9.68473 -9.44507 -9.29783 -8.86143 -8.59282 -8.18947 -6.87233 -5.71882 -3.00483 0.92522 1.03073 2.95993 3.26771 3.39596 3.43836 3.49690 3.51729 4.06837 4.41876 4.55805 4.60419 4.67451 4.70555 4.76801 4.79461 5.08410 5.09828 5.20992 5.25440 5.39851 5.44184 5.54967 5.59100 5.62497 5.67421 5.77175 5.77888 5.85518 5.89958 5.94192 5.99592 6.05589 6.10497 6.12875 6.19805 6.22346 6.29776 6.33466 6.39704 6.41889 6.50830 6.67760 6.73538 6.77021 7.03008 7.72369 7.77820 8.45908 8.57002 9.57787 10.16637 10.52893 11.50090 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016282 B = 0.003656 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.230417 B = 7656.177885 C = 8333.602996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.145 3.855 5 N -0.727 5.727 6 C -0.239 4.239 7 H 0.068 0.932 8 C -0.012 4.012 9 N -0.926 5.926 10 Si 0.903 3.097 11 H -0.282 1.282 12 H -0.293 1.293 13 H -0.292 1.292 14 N -0.588 5.588 15 C 0.074 3.926 16 C 0.549 3.451 17 O -0.532 6.532 18 C -0.067 4.067 19 C -0.062 4.062 20 C -0.089 4.089 21 C -0.150 4.150 22 C 0.090 3.910 23 F -0.143 7.143 24 C -0.149 4.149 25 C -0.081 4.081 26 C -0.132 4.132 27 C -0.137 4.137 28 C -0.112 4.112 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.026 0.974 33 H 0.020 0.980 34 H 0.387 0.613 35 H 0.253 0.747 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.177 -2.212 -15.194 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.117 0.883 4 C 0.016 3.984 5 N -0.371 5.371 6 C -0.371 4.371 7 H 0.086 0.914 8 C -0.208 4.208 9 N -0.575 5.575 10 Si 0.735 3.265 11 H -0.207 1.207 12 H -0.220 1.220 13 H -0.220 1.220 14 N -0.320 5.320 15 C -0.069 4.069 16 C 0.335 3.665 17 O -0.409 6.409 18 C -0.070 4.070 19 C -0.063 4.063 20 C -0.107 4.107 21 C -0.169 4.169 22 C 0.071 3.929 23 F -0.122 7.122 24 C -0.168 4.168 25 C -0.099 4.099 26 C -0.169 4.169 27 C -0.174 4.174 28 C -0.150 4.150 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.222 0.778 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.994 -1.704 -14.921 19.220 hybrid contribution 0.440 -0.543 0.442 0.827 sum -11.553 -2.247 -14.479 18.660 Atomic orbital electron populations 1.22069 0.95283 1.02038 1.01994 1.21397 0.93106 0.98477 0.84827 0.88287 1.20989 0.87212 0.96670 0.93543 1.42294 0.99625 1.70039 1.25178 1.19242 0.89437 1.29245 0.99130 0.91372 1.24712 0.96387 1.01706 0.97991 1.69690 1.06961 1.50759 1.30069 0.86172 0.79971 0.78751 0.81607 1.20698 1.21986 1.21955 1.47506 1.50355 1.12108 1.22076 1.21957 1.01209 0.82267 1.01472 1.19524 0.77453 0.85713 0.83781 1.90689 1.53792 1.19138 1.77256 1.20951 0.92814 1.00161 0.93094 1.19515 0.95832 0.93420 0.97487 1.21044 0.96685 0.96911 0.96023 1.21113 0.96119 0.98819 1.00863 1.17730 0.86983 0.94606 0.93597 1.91490 1.55396 1.95519 1.69794 1.21109 0.99828 0.95787 1.00031 1.20936 0.93272 0.99617 0.96071 1.23172 0.95167 0.95207 1.03351 1.22849 0.96223 0.96513 1.01851 1.22915 0.92530 1.00951 0.98566 0.91403 0.92708 0.92378 0.95602 0.96275 0.77840 0.93698 0.91687 0.91398 0.91318 0.84198 0.84679 0.84817 0.84969 0.89343 0.89493 0.88200 0.91336 0.89732 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.18 37.16 0.34 -1.66 16 2 C 0.13 2.13 2.79 -67.93 -0.19 1.94 16 3 H 0.10 1.93 6.91 -51.93 -0.36 1.57 16 4 C 0.14 2.91 5.56 -4.04 -0.02 2.88 16 5 N -0.73 -18.49 5.43 -59.91 -0.33 -18.82 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 9 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 10 Si 0.90 22.40 29.55 -169.99 -5.02 17.37 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 N -0.59 -9.58 2.24 -173.93 -0.39 -9.97 16 15 C 0.07 1.01 8.23 59.85 0.49 1.50 16 16 C 0.55 9.54 5.65 -10.99 -0.06 9.48 16 17 O -0.53 -11.22 15.31 5.55 0.08 -11.13 16 18 C -0.07 -0.93 0.50 -155.86 -0.08 -1.00 16 19 C -0.06 -0.72 3.79 -104.62 -0.40 -1.12 16 20 C -0.09 -0.87 7.59 -39.59 -0.30 -1.17 16 21 C -0.15 -1.41 10.03 -39.51 -0.40 -1.81 16 22 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 23 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 24 C -0.15 -1.54 10.03 -39.52 -0.40 -1.93 16 25 C -0.08 -0.92 9.35 -39.59 -0.37 -1.29 16 26 C -0.13 -1.77 5.75 -25.92 -0.15 -1.92 16 27 C -0.14 -2.08 7.79 -25.92 -0.20 -2.28 16 28 C -0.11 -1.54 7.11 -25.78 -0.18 -1.72 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.69 6.67 -51.93 -0.35 0.34 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 34 H 0.39 10.63 7.06 -40.82 -0.29 10.34 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.06 1.00 6.95 -51.93 -0.36 0.64 16 37 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 38 H 0.07 0.80 3.96 -51.93 -0.21 0.60 16 39 H 0.14 1.16 5.89 -52.49 -0.31 0.85 16 40 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.13 1.58 7.99 -52.48 -0.42 1.16 16 43 H 0.09 0.92 6.15 -51.93 -0.32 0.60 16 44 H 0.09 1.36 6.01 -51.93 -0.31 1.04 16 45 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 1.31 7.36 -51.93 -0.38 0.93 16 48 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -32.13 380.57 -8.57 -40.70 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.97 Total: 11.44 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.45 Total: -6.72 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.01 Total: -55.85 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.13 -8.57 -40.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482318122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.031 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds