Wall clock time and date at job start Tue Mar 31 2020 17:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47116 * 2 1 4 4 C 1.53000 * 109.47195 * 119.99963 * 2 1 3 5 5 N 1.46504 * 109.47317 * 174.99814 * 4 2 1 6 6 C 1.36932 * 120.00012 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00121 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00145 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99475 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00408 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47016 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46938 * 119.99659 * 10 8 6 13 13 H 1.48492 * 109.47376 * 240.00108 * 10 8 6 14 14 N 1.46500 * 109.47014 * 239.99963 * 2 1 3 15 15 C 1.46506 * 119.99712 * 299.99819 * 14 2 1 16 16 C 1.34767 * 120.00143 * 120.00123 * 14 2 1 17 17 O 1.21288 * 119.99928 * 5.37200 * 16 14 2 18 18 C 1.50698 * 120.00204 * 185.37351 * 16 14 2 19 19 C 1.50702 * 112.85049 * 66.67539 * 18 16 14 20 20 C 1.38242 * 119.97212 * 233.60750 * 19 18 16 21 21 C 1.38202 * 120.02121 * 179.76482 * 20 19 18 22 22 C 1.38457 * 119.97436 * 0.50710 * 21 20 19 23 23 F 1.35101 * 120.02579 * 179.77015 * 22 21 20 24 24 C 1.38454 * 119.95205 * 359.74734 * 22 21 20 25 25 C 1.38199 * 119.97328 * 359.97438 * 24 22 21 26 26 C 1.53780 * 113.61628 * 295.47910 * 18 16 14 27 27 C 1.53783 * 87.08093 * 270.88240 * 26 18 16 28 28 C 1.53780 * 87.17179 * 334.52464 * 27 26 18 29 29 H 1.09002 * 109.46643 * 299.99823 * 1 2 3 30 30 H 1.08999 * 109.46978 * 59.99591 * 1 2 3 31 31 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47285 * 294.99978 * 4 2 1 33 33 H 1.09002 * 109.47130 * 54.99828 * 4 2 1 34 34 H 0.96997 * 119.99578 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99473 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.46964 * 264.81478 * 15 14 2 37 37 H 1.08998 * 109.47118 * 24.82362 * 15 14 2 38 38 H 1.09003 * 109.46356 * 144.82010 * 15 14 2 39 39 H 1.07998 * 119.98981 * 0.02562 * 20 19 18 40 40 H 1.08002 * 120.01292 * 180.25426 * 21 20 19 41 41 H 1.08000 * 120.01473 * 180.02562 * 24 22 21 42 42 H 1.08003 * 119.98801 * 180.02562 * 25 24 22 43 43 H 1.09001 * 113.61511 * 156.33789 * 26 18 16 44 44 H 1.08994 * 113.68747 * 25.44021 * 26 18 16 45 45 H 1.09002 * 113.61354 * 89.11502 * 27 26 18 46 46 H 1.08997 * 113.61620 * 219.93508 * 27 26 18 47 47 H 1.08998 * 113.61527 * 140.02424 * 28 27 26 48 48 H 1.09001 * 113.61796 * 270.92279 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1838 -1.4389 2.2067 7 1 3.6468 -1.8440 3.0516 8 6 5.5673 -1.5381 2.1514 9 7 6.2218 -1.0438 1.1219 10 14 6.5001 -2.3729 3.5378 11 1 5.5396 -2.8404 4.5694 12 1 7.2518 -3.5349 2.9993 13 1 7.4502 -1.4077 4.1467 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0933 -1.4279 16 6 2.7932 -0.0357 -2.0833 17 8 3.1667 1.0933 -1.8448 18 6 3.1954 -0.7061 -3.3716 19 6 2.0283 -0.9512 -4.2930 20 6 1.7920 -2.2211 -4.7856 21 6 0.7192 -2.4479 -5.6267 22 6 -0.1129 -1.4007 -5.9844 23 9 -1.1593 -1.6204 -6.8103 24 6 0.1278 -0.1282 -5.4947 25 6 1.1978 0.0952 -4.6491 26 6 4.0911 -1.9398 -3.1706 27 6 5.2916 -0.9807 -3.2328 28 6 4.4009 -0.0414 -4.0630 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9825 -0.4622 0.4319 35 1 7.1886 -1.1128 1.0834 36 1 2.4610 -2.7357 -1.0528 37 1 0.7353 -2.3244 -0.9069 38 1 1.5336 -2.2631 -2.4967 39 1 2.4435 -3.0370 -4.5096 40 1 0.5323 -3.4409 -6.0082 41 1 -0.5209 0.6893 -5.7727 42 1 1.3856 1.0876 -4.2666 43 1 4.0535 -2.6465 -3.9997 44 1 3.9650 -2.4190 -2.1998 45 1 5.5738 -0.5709 -2.2630 46 1 6.1411 -1.3798 -3.7871 47 1 4.5239 1.0121 -3.8117 48 1 4.4478 -0.2299 -5.1355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482318122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:05 Heat of formation + Delta-G solvation = -30.841968 kcal Electronic energy + Delta-G solvation = -30525.055061 eV Core-core repulsion = 26495.062619 eV Total energy + Delta-G solvation = -4029.992442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.86697 -42.30731 -39.91488 -38.58258 -37.50286 -35.82987 -33.54955 -32.18087 -32.02941 -31.52188 -27.99252 -27.42452 -26.92060 -26.69302 -24.56460 -23.97493 -23.26664 -22.55572 -20.87428 -19.59196 -19.08384 -18.77797 -18.12578 -17.45514 -17.21035 -16.81348 -16.64698 -16.52969 -16.17923 -15.78336 -15.40673 -15.25290 -15.04672 -14.69496 -14.56283 -14.38212 -14.05093 -13.94145 -13.72760 -13.67791 -13.54820 -13.28265 -13.13299 -12.91877 -12.90378 -12.81118 -12.69648 -12.50880 -12.09518 -12.03804 -11.87085 -11.77177 -11.71971 -11.42966 -11.25725 -10.98498 -10.72869 -10.07090 -9.56485 -9.46732 -8.97371 -7.90799 -5.20701 0.09217 0.26051 1.45666 1.47065 1.56721 1.63075 2.04143 2.54524 2.56173 3.27010 3.40743 3.41554 3.52034 3.58218 3.64510 3.83124 3.88081 3.95839 3.97802 4.10101 4.27435 4.30517 4.31676 4.41319 4.46985 4.51634 4.67395 4.72055 4.77512 4.78281 4.85484 4.89693 4.95570 4.96269 4.99948 5.04893 5.13394 5.13869 5.15520 5.16651 5.26396 5.29887 5.48018 5.50534 5.52889 5.69278 5.89492 6.28169 6.47725 7.23147 7.35260 8.11311 8.35526 9.31531 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016282 B = 0.003656 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.230417 B = 7656.177885 C = 8333.602996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.128 3.872 3 H 0.066 0.934 4 C 0.143 3.857 5 N -0.740 5.740 6 C -0.244 4.244 7 H 0.075 0.925 8 C -0.072 4.072 9 N -0.962 5.962 10 Si 0.971 3.029 11 H -0.266 1.266 12 H -0.292 1.292 13 H -0.298 1.298 14 N -0.588 5.588 15 C 0.073 3.927 16 C 0.538 3.462 17 O -0.583 6.583 18 C -0.059 4.059 19 C -0.070 4.070 20 C -0.082 4.082 21 C -0.139 4.139 22 C 0.084 3.916 23 F -0.147 7.147 24 C -0.147 4.147 25 C -0.090 4.090 26 C -0.118 4.118 27 C -0.145 4.145 28 C -0.105 4.105 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.035 0.965 34 H 0.373 0.627 35 H 0.248 0.752 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.132 0.868 44 H 0.063 0.937 45 H 0.041 0.959 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 -4.733 -16.415 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.084 0.916 4 C 0.016 3.984 5 N -0.383 5.383 6 C -0.376 4.376 7 H 0.093 0.907 8 C -0.265 4.265 9 N -0.612 5.612 10 Si 0.801 3.199 11 H -0.190 1.190 12 H -0.219 1.219 13 H -0.226 1.226 14 N -0.319 5.319 15 C -0.069 4.069 16 C 0.327 3.673 17 O -0.464 6.464 18 C -0.062 4.062 19 C -0.070 4.070 20 C -0.099 4.099 21 C -0.158 4.158 22 C 0.064 3.936 23 F -0.125 7.125 24 C -0.166 4.166 25 C -0.108 4.108 26 C -0.155 4.155 27 C -0.183 4.183 28 C -0.142 4.142 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.205 0.795 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.164 0.836 42 H 0.135 0.865 43 H 0.150 0.850 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.076 0.924 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.085 -4.258 -16.122 21.827 hybrid contribution 1.014 0.287 0.834 1.344 sum -13.071 -3.971 -15.287 20.502 Atomic orbital electron populations 1.21973 0.91383 1.03601 1.03084 1.21286 0.95919 0.96334 0.84060 0.91606 1.21181 0.84375 0.97694 0.95182 1.42498 1.01839 1.69748 1.24200 1.19637 0.89956 1.28446 0.99566 0.90663 1.25535 0.97424 1.03064 1.00446 1.69879 1.06718 1.52531 1.32098 0.85108 0.78490 0.77351 0.78979 1.19025 1.21864 1.22602 1.47628 1.49807 1.13119 1.21361 1.22111 1.01321 0.80130 1.03330 1.20254 0.76686 0.85341 0.85066 1.90655 1.55622 1.21527 1.78547 1.20759 0.93960 0.99766 0.91715 1.19333 0.95271 0.94561 0.97843 1.21187 0.96981 0.96289 0.95491 1.21365 0.95017 0.99655 0.99745 1.17900 0.87121 0.94941 0.93590 1.91488 1.55616 1.95520 1.69910 1.21192 0.99454 0.96491 0.99461 1.20845 0.94037 0.99116 0.96835 1.23196 0.93412 0.95172 1.03750 1.22727 0.98113 0.97922 0.99533 1.22920 0.92135 0.99048 1.00124 0.90100 0.91902 0.90452 0.95536 0.94698 0.79528 0.94313 0.93565 0.89322 0.88928 0.82137 0.82059 0.83613 0.86457 0.85004 0.91844 0.94008 0.89273 0.92443 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.18 71.98 0.66 -2.75 16 2 C 0.13 4.41 2.79 44.99 0.13 4.54 16 3 H 0.07 2.72 6.91 -2.39 -0.02 2.70 16 4 C 0.14 5.77 5.56 86.38 0.48 6.25 16 5 N -0.74 -38.85 5.43 -343.44 -1.87 -40.71 16 6 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 7 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 8 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 9 N -0.96 -60.08 13.06 21.65 0.28 -59.80 16 10 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 13 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 14 N -0.59 -19.40 2.24 -822.58 -1.85 -21.24 16 15 C 0.07 1.89 8.23 127.77 1.05 2.94 16 16 C 0.54 19.58 5.65 87.66 0.49 20.07 16 17 O -0.58 -26.65 15.31 -3.06 -0.05 -26.70 16 18 C -0.06 -1.62 0.50 -53.06 -0.03 -1.65 16 19 C -0.07 -1.47 3.79 -19.86 -0.08 -1.55 16 20 C -0.08 -1.28 7.59 22.26 0.17 -1.11 16 21 C -0.14 -2.02 10.03 22.31 0.22 -1.80 16 22 C 0.08 1.49 7.30 22.37 0.16 1.65 16 23 F -0.15 -2.82 17.27 44.97 0.78 -2.04 16 24 C -0.15 -2.73 10.03 22.31 0.22 -2.51 16 25 C -0.09 -1.95 9.35 22.26 0.21 -1.75 16 26 C -0.12 -3.09 5.75 31.12 0.18 -2.91 16 27 C -0.15 -4.60 7.79 31.12 0.24 -4.36 16 28 C -0.10 -2.93 7.11 31.21 0.22 -2.71 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.57 6.67 -2.39 -0.02 1.56 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 1.32 7.84 -2.39 -0.02 1.30 16 34 H 0.37 21.63 7.06 -92.71 -0.65 20.97 16 35 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.05 1.39 6.95 -2.39 -0.02 1.38 16 37 H 0.09 1.91 6.44 -2.39 -0.02 1.90 16 38 H 0.09 1.93 3.96 -2.39 -0.01 1.92 16 39 H 0.16 1.84 5.89 -2.91 -0.02 1.83 16 40 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 42 H 0.12 2.87 7.99 -2.91 -0.02 2.85 16 43 H 0.13 2.27 6.15 -2.39 -0.01 2.26 16 44 H 0.06 1.99 6.01 -2.39 -0.01 1.98 16 45 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.06 1.92 7.36 -2.39 -0.02 1.90 16 48 H 0.12 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -74.25 380.57 5.31 -68.94 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.33 Total: 37.14 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 5.65 Total: -4.35 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -3.43 Total: -121.76 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -74.25 5.31 -68.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482318122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.100 kcal (2) G-P(sol) polarization free energy of solvation -74.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds